Project: CRCNS Hippocampus: hc-14

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Description

The data set contains simultaneous recordings from 4 rats in the dorsal hippocampus and amygdala (including BLA, CeN and neighboring nuclei and structures such as piriform cortex.) during sleep and behavior. Histological reconstructions are provided as maps with corresponding structure for each electrode shank (8-shank Neuronexus silicon probes) and recording day.

The behavior consists of running on a linear track for water rewards. In one location and one direction, an aversive airpuff is delivered. The location and direction change everyday in a pseudo-random manner.

Each session consists of a track training session preceded and followed by sleep and rest in the homecage. At the beginning and end of each daily recording, a test is recorded with the animal running a few laps on the track without airpuff.

This dataset contains:
– Filtered LFP files at 1250Hz (134 or 166 channels)
– Sorted Spike information as given by the Neuroscope suite, KlustaKwik followed by manual sorting.
– Videos (tracking by LED on the animal’s head) and position files.
– Events for ripples, airpuffs and rewards in the Neuroscope format (.evt)
– xml files for channel ordering and descriptions.

The data is organized in folders per animal and session (1 session/day).

A set of analysis and thorough description of the dataset and methods are described in:
G. Girardeau, I. Inema, G. Buzsaki. Reactivations of emotional memory in the hippocampus-amygdala system during sleep. Nature Neuroscience (2017) doi: 10.1038/nn.4637.

Animals

Animal name

Investigator

Sessions

Animal actions

Rat11
Male, Rat, Long Evans
Wild type
Gabrielle Girardeau 18



Rat10
Male, Rat, Long Evans
Wild type
Gabrielle Girardeau 15



Rat08
Male, Rat, Long Evans
Wild type
Gabrielle Girardeau 13

Probe implants
Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | HIP | (-3.5,2.5,1.6)
Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | BLA | (-2.5,-5,8)
Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | BLA | (-2.5,5,8)




Rat09
Male, Rat, Long Evans
Wild type
Gabrielle Girardeau 15

Probe implants
Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | HIP | (-3.5,2.5,1.6)
Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | BLA | (-2.5,-5,8)
Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | BLA | (-2.5,5,8)




Sessions

Sessions

Animal name

Date

Subsessions

Rat08-20130710, Sorted units
Public session. Webshare, Globus
Rat08 July 10, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, LinearTrack_AirpuffHalfway, Homecage_Sleep, Homecage_Sleep
Rat08-20130710-01, Rat08-20130710-02, Rat08-20130710-03, Rat08-20130710-04, Rat08-20130710-05, Rat08-20130710-06
Rat08-20130708, Sorted units
Public session. Webshare, Globus
Rat08 July 8, 2013 Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep
Rat08-20130708-01, Rat08-20130708-02, Rat08-20130708-03
Rat08-20130722, Sorted units
Public session. Webshare, Globus
Rat08 July 22, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130722-01, Rat08-20130722-02, Rat08-20130722-03, Rat08-20130722-04, Rat08-20130722-05
Rat08-20130720, Sorted units
Public session. Webshare, Globus
Rat08 July 20, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130720-01, Rat08-20130720-02, Rat08-20130720-03, Rat08-20130720-04, Rat08-20130720-05
Rat08-20130719, Sorted units
Public session. Webshare, Globus
Rat08 July 17, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130719-01, Rat08-20130719-02, Rat08-20130719-03, Rat08-20130719-04, Rat08-20130719-05
Rat08-20130718, Sorted units
Public session. Webshare, Globus
Rat08 July 18, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130718-01, Rat08-20130718-02, Rat08-20130718-03, Rat08-20130718-04, Rat08-20130718-05, Rat08-20130718-06
Rat08-20130717, Sorted units
Public session. Webshare, Globus
Rat08 July 17, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130717-01, Rat08-20130717-02, Rat08-20130717-03, Rat08-20130717-04, Rat08-20130717-05
Rat08-20130716, Sorted units
Public session. Webshare, Globus
Rat08 July 16, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130716-01, Rat08-20130716-02, Rat08-20130716-03, Rat08-20130716-04, Rat08-20130716-05
Rat08-20130715, Sorted units
Public session. Webshare, Globus
Rat08 July 15, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130715-01, Rat08-20130715-02, Rat08-20130715-03, Rat08-20130715-04, Rat08-20130715-05
Rat08-20130711, Sorted units
Public session. Webshare, Globus
Rat08 July 11, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, LinearTrack_AirpuffHalfway, Homecage_Sleep
Rat08-20130711-01, Rat08-20130711-02, Rat08-20130711-03, Rat08-20130711-04, Rat08-20130711-05
Rat08-20130709, Sorted units
Public session. Webshare, Globus
Rat08 July 9, 2013 Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep
Rat08-20130708-01, Rat08-20130708-02, Rat08-20130708-03
Rat09-20140409, Sorted units
Public session. Webshare, Globus
Rat09 April 9, 2014 Homecage_Sleep
Rat09-20140409-01
Rat09-20140408, Sorted units
Public session. Webshare, Globus
Rat09 April 8, 2014 Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat09-201404088-01, Rat09-20140408-02
Rat09-20140407, Sorted units
Public session. Webshare, Globus
Rat09 April 7, 2014 Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep
Rat09-20140407-01, Rat09-20140407-02, Rat09-20140407-03
Rat09-20140405, Sorted units
Public session. Webshare, Globus
Rat09 April 5, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140405-01, Rat09-20140405-02, Rat09-20140405-03, Rat09-20140405-04, Rat09-20140405-05
Rat09-20140404, Sorted units
Public session. Webshare, Globus
Rat09 April 4, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140404-01, Rat09-20140404-02, Rat09-20140404-03, Rat09-20140404-04, Rat09-20140404-05
Rat09-20140403, Sorted units
Public session. Webshare, Globus
Rat09 April 3, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140403-01, Rat09-20140403-02, Rat09-20140403-03, Rat09-20140403-04, Rat09-20140403-05, Rat09-20140403-06
Rat09-20140402, Sorted units
Public session. Webshare, Globus
Rat09 April 2, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140402-01, Rat09-20140402-02, Rat09-20140402-03, Rat09-20140402-04, Rat09-20140402-05
Rat09-20140401, Sorted units
Public session. Webshare, Globus
Rat09 April 1, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140401-01, Rat09-20140401-02, Rat09-20140401-03, Rat09-20140401-04, Rat09-20140401-05
Rat09-20140331, Sorted units
Public session. Webshare, Globus
Rat09 March 31, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140331-01, Rat09-20140331-02, Rat09-20140331-03, Rat09-20140331-04, Rat09-20140331-05
Rat09-20140329, Sorted units
Public session. Webshare, Globus
Rat09 March 29, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140329-01, Rat09-20140329-02, Rat09-20140329-03, Rat09-20140329-04, Rat09-20140329-05
Rat09-20140328, Sorted units
Public session. Webshare, Globus
Rat09 March 28, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140328-01, Rat09-20140328-02, Rat09-20140328-03, Rat09-20140328-04, Rat09-20140328-05
Rat09-20140327, Sorted units
Public session. Webshare, Globus
Rat09 March 26, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140327-01, Rat09-20140327-02, Rat09-20140327-03, Rat09-20140327-04, Rat09-20140327-05
Rat09-20140326, Sorted units
Public session. Webshare, Globus
Rat09 March 26, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140326-01, Rat09-20140326-02, Rat09-20140326-03, Rat09-20140326-04, Rat09-20140326-05
Rat09-20140325, Sorted units
Public session. Webshare, Globus
Rat09 March 25, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140325-01, Rat09-20140325-02, Rat09-20140325-03, Rat09-20140325-04, Rat09-20140325-05
Rat09-20140324, Sorted units
Public session. Webshare, Globus
Rat09 March 24, 2014 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_EndToEnd
Rat09-20140324-01, Rat09-20140324-02, Rat09-20140324-03, Rat09-20140324-04, Rat09-20140324-05
Rat08-20130712, Sorted units
Public session. Webshare, Globus
Rat08 July 12, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130712-01, Rat08-20130712-02, Rat08-20130712-03, Rat08-20130712-04, Rat08-20130712-05, Rat08-20130712-06
Rat08-20130713, Sorted units
Public session. Webshare, Globus
Rat08 July 12, 2013 LinearTrack_AirpuffHalfway, Homecage_Sleep, LinearTrack_AirpuffHalfway, Homecage_Sleep, Homecage_Sleep, LinearTrack_AirpuffHalfway
Rat08-20130712-01, Rat08-20130712-02, Rat08-20130712-03, Rat08-20130712-04, Rat08-20130712-05, Rat08-20130712-06