Details for Peter_MS21_180803_142301_concat

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  • Date & time: 2018-08-03, 14:23:01

  • Animal subject: MS21

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2018-08-07 12:47:34 by Michelle Hernandez
    Updated: 2020-07-20 22:34:43 by Peter Petersen ADMIN

  • Notes:
    recordingID = 160

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS21_180803_142301 Homecage_Sleep Homecage Homecage_Rat 6945.588 Sleep on maze.
Peter_MS21_180803_162930 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 1580.76
Peter_MS21_180803_165853 Homecage_Sleep Homecage Homecage_Rat 3853.368

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 247594320 128 14

Implanted probes

MS21 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS21 : #2 Silicon probe NeuroNexus Buzsaki64 (64 ch, 8 shanks, staggered) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 49,56,48,57,51,54,50,55,53,52
2 59,36,58,34,61,33,60,32,63,62
3 37,43,38,47,40,46,41,45,42,44
4 39,27,35,24,29,22,25,23,21,20
5 26,5,28,4,31,3,30,2,0,1
6 6,15,7,14,8,13,9,12,10,11
7 16,19,18,17
8 113,120,112,121,115,118,114,119,117,116
9 123,100,122,98,125,97,124,96,127,126
10 101,107,102,111,104,110,105,109,106,108
11 103,91,99,88,93,86,89,87,85,84
12 90,69,92,68,95,67,94,66,64,65
13 70,79,71,78,72,77,73,76,74,75
14 80,83,82,81
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
aux 4 Temperature MS temperature probe
adc 1 WheelPosition Running wheel
dig 1 OptitrackSync TTL sync
dig 2 BaslerSync TTL sync
dig 5 ArduinoRemoteCh1 Remote Button A
dig 6 ArduinoRemoteCh2 Remote Button B
dig 7 ArduinoRemoteCh3 Remote Button C
dig 8 ArduinoRemoteCh4 Remote Button D
aux 1 AccelerometerX Head mounted accelerometer
aux 2 AccelerometerY Head mounted accelerometer
aux 3 AccelerometerZ Head mounted accelerometer
adc ch_opto_on
adc ch_opto_off

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-08-03 04.29.42 PM.csv Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180803_162934390.avi Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
DG – Dentate gyrus (View in Atlas) 1:64
CA3 – Field CA3 (View in Atlas) 65:128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 64
BadChannels

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
cooling_onsets
cooling_offsets
time_frame

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Peter Petersen 0 10067

Spike sorted units

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