Details for Peter_MS21_180719_155941_concat

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  • Date & time: 2018-07-19, 15:59:41

  • Animal subject: MS21

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2018-12-07 14:46:06 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:45:54 by Peter Petersen

  • Notes:
    recordingID 141

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS21_180719_155941 Homecage_Sleep Homecage Homecage_Rat 142.092
Peter_MS21_180719_160208 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter 2425.752
Peter_MS21_180719_164537 Homecage_Sleep Homecage Homecage_Rat 4340.052

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 86801000 128 14 0.195

Implanted probes

MS21 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS21 : #2 Silicon probe NeuroNexus Buzsaki64 (64 ch, 8 shanks, staggered) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 20, 19, 18
8 114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9 124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10 102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11 104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12 91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13 71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14 81, 84, 83, 82
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5, 6, 7, 8 ArduinoRemote Remote Button A-D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1, 2, 3 Accelerometer Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) adc 3 ch_opto_on
Intan Technologies, RHD2000 USB interface board (256ch) adc 4 ch_opto_off

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-06-27 03.18.24 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180627_151819520.avi 2 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 41 3
Cortical 7, 14
Ripple 41 3
Bad 30, 26, 39, 16, 15, 40, 36
RippleNoise 121

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
linear_track_slope 10,-10,0 degrees of incline of linear track
CoolingSession 1
pos_x_limits -70,240
pos_y_limits -30,30

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2018-12-07_151933 1:128 Peter Petersen Yes 110 22305

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 9049 2.0854959060475 11 CA1 Pyramidal Cell Unknown 4.0888495966405 105.71768075296 0.63 57.244312175291
2 5893 1.3591117917305 11 CA1 Pyramidal Cell Unknown 2.0363142711692 104.42070424129 0.71 30.076891914679
3 13561 3.1317056585113 5 CA1 Pyramidal Cell Unknown 3.244598480938 149.13676912072 0.72 27.135706350474
4 6 0.0038656199684527 3 CA1 Pyramidal Cell Unknown 0 173.33500399639 0.71 0
5 10882 2.5095868836472 3 CA1 Pyramidal Cell Unknown 3.4920051461128 129.3623153925 0.72 98.418738840026
6 8900 2.0531155289954 5 CA1 Pyramidal Cell Unknown 4.2696629213483 328.00127643045 0.72 37.092982413115
7 6227 1.4364966626194 2 CA1 Pyramidal Cell Unknown 4.0147743696804 146.43446325369 0.69 33.227098283708
8 4488 1.0356672923439 1 CA1 Pyramidal Cell Unknown 2.2281639928699 290.76230720685 0.63 25.241165677838
9 4058 1.6567527894371 2 CA1 Pyramidal Cell Unknown 1.2321340561853 170.88580095404 0.63 47.829432618461
10 4755 1.0969269194413 1 CA1 Pyramidal Cell Unknown 1.2618296529968 140.10744588145 0.66 33.059791146409
11 1544 0.80827844648045 2 CA1 Pyramidal Cell Unknown 1.2953367875648 283.1171914498 0.71 36.309060322768
12 6064 1.3994993097357 2 CA1 Pyramidal Cell Unknown 3.7928759894459 296.01081797686 0.72 35.001822768668
13 2027 0.69061874669767 12 CA1 Pyramidal Cell Unknown 2.9600394671929 207.44891037982 0.67 37.262022749284
14 1805 0.41930091108977 12 CA1 Pyramidal Cell Unknown 0 187.48635723483 0.66 31.304384112377
15 8116 1.8714877969415 11 CA1 Pyramidal Cell Unknown 1.4785608674224 121.60025188117 0.69 42.2043598837
16 7150 1.6486416334308 13 CA1 Pyramidal Cell Unknown 7.2727272727273 113.37337796032 0.59 35.627405770444
17 1340 0.30912990014435 10 CA1 Pyramidal Cell Unknown 0.74626865671642 312.5952953067 0.69 29.021222404693
18 22499 5.1864008462001 6 CA1 Pyramidal Cell Unknown 4.4890884039291 174.89727573879 0.69 79.412303950538
19 4854 1.1207920078802 11 CA1 Pyramidal Cell Unknown 1.2360939431397 225.47345860505 0.58 32.448127552033
20 8042 1.8561741540974 5 CA1 Pyramidal Cell Unknown 3.2330266102959 178.20479090915 0.68 24.465615338049
21 1006 0.23574026802778 1 CA1 Pyramidal Cell Unknown 9.9403578528827 1081.223339465 0.73 31.39132502334
22 17578 4.0513225448874 12 CA1 Pyramidal Cell Unknown 6.1440436909774 120.79393831225 0.61 46.948816343928
23 1946 0.45938827092983 13 CA1 Pyramidal Cell Unknown 3.0832476875642 218.8864337118 0.62 29.480681611086
24 10679 2.460758800865 13 CA1 Pyramidal Cell Unknown 4.5884446109186 126.88292229828 0.59 37.923753251076
25 7197 1.6593558671954 13 CA1 Pyramidal Cell Unknown 7.6420730860081 182.94444760046 0.65 23.464832980086
26 7230 1.6672409193222 10 CA1 Pyramidal Cell Unknown 3.7344398340249 222.25149487383 0.69 25.695225119079
27 17897 4.1251241403754 11 CA1 Pyramidal Cell Unknown 2.2350114544337 230.81451552563 0.66 35.978552743513
28 9493 2.1875447589159 13 CA1 Pyramidal Cell Unknown 5.8990835352365 71.277018571986 0.72 55.684473196661
29 4950 1.1418212852234 13 CA1 Pyramidal Cell Unknown 10.30303030303 130.70372610745 0.56 49.116938696144
30 4679 1.0791984883471 10 CA1 Pyramidal Cell Unknown 2.1372088053003 172.05255961461 0.72 29.380990038476
31 1274 0.29424589563641 6 CA1 Pyramidal Cell Unknown 0.78492935635793 497.45113008583 0.74 29.536369867983
32 19048 4.3928546925169 5 CA1 Pyramidal Cell Unknown 7.3498530029399 245.66279001134 0.73 36.534001774343
33 6475 1.49616304078 3 CA1 Pyramidal Cell Unknown 0.77220077220077 74.697433621125 0.29 59.859409689101
34 11978 2.7605584099405 1 CA1 Pyramidal Cell Unknown 3.1724828852897 211.80794816901 0.68 34.392388768044
35 6715 1.5483272537566 1 CA1 Pyramidal Cell Unknown 2.8294862248697 153.62571319246 0.7 47.487621038558
36 18437 4.2517775016261 9 CA1 Pyramidal Cell Unknown 4.8272495525302 137.91727221711 0.72 91.730582118803
37 9854 2.2709223237864 3 CA1 Pyramidal Cell Unknown 5.4800081185305 78.979515053495 0.58 68.488003742069
38 10316 2.3773977413615 12 CA1 Pyramidal Cell Unknown 1.4540519581233 143.2849497785 0.7 54.011686187399
39 1437 0.3337519865298 9 CA1 Pyramidal Cell Unknown 0.69589422407794 120.51859760279 0.63 47.12099040345
40 21347 4.9200025380179 11 CA1 Wide Interneuron Unknown 0.046844989928327 211.67938614088 0.57 103.23028689409
41 75078 17.29961506755 13 CA1 Narrow Interneuron Unknown 0.65265457257785 118.13996549241 0.31 0
42 61302 14.133627287819 2 CA1 Narrow Interneuron Unknown 3.1809728883234 118.33997020475 0.49 160.68174069455
43 3862 0.89247728539006 2 CA1 Pyramidal Cell Unknown 1.0357327809425 131.67214285026 0.69 31.21679006332
44 123628 28.485603362512 5 CA1 Narrow Interneuron Unknown 2.434723525415 146.08752084765 0.26 0
45 37838 8.7205308290689 6 CA1 Narrow Interneuron Unknown 0.63428299593002 110.37966002112 0.31 176.42263380538
46 4047 0.93348457613376 11 CA1 Pyramidal Cell Unknown 1.2354830738819 114.15055752263 0.65 26.601603271264
47 12421 2.8650600540438 11 CA1 Pyramidal Cell Unknown 4.5890024957733 396.2725620464 0.72 44.566844217198
48 17100 3.9420272107765 11 CA1 Pyramidal Cell Unknown 3.5672514619883 166.96791812233 0.7 55.358145612909
49 102396 23.59392186692 12 CA1 Narrow Interneuron Unknown 4.8830032423142 209.46031533295 0.24 0
50 30241 6.968098064995 1 CA1 Narrow Interneuron Unknown 0.79362454945273 141.86611921521 0.26 570.04864241761
51 10320 2.3796663871443 10 CA1 Pyramidal Cell Unknown 6.4922480620155 445.45706307898 0.71 29.548152353719
52 3594 0.83479537693851 11 CA1 Pyramidal Cell Unknown 0.27824151363383 299.60044075342 0.65 37.491479462425
53 7847 1.8087309751472 4 CA1 Pyramidal Cell Unknown 4.4603033006244 185.42139126037 0.72 51.636070649229
54 10613 2.4483878774233 12 CA1 Pyramidal Cell Unknown 3.6747385282201 137.79301700657 0.72 50.45125614333
55 152720 35.18908847012 10 CA1 Narrow Interneuron Unknown 0.72682032477737 504.33852831305 0.2 0
56 84778 19.533949476775 9 CA1 Narrow Interneuron Unknown 0.29488782467149 116.82111915577 0.42 0
57 12369 2.8505127310515 13 CA1 Pyramidal Cell Unknown 2.8296547821166 100.82524353739 0.54 53.905351043199
58 4532 1.0442593375207 13 CA1 Pyramidal Cell Unknown 1.323918799647 110.3243269176 0.68 29.769143350204
59 1741 0.53526400590444 2 CA1 Pyramidal Cell Unknown 0.57438253877082 102.82015090203 0.59 65.734540787524
60 1398 0.32257264746159 10 CA1 Pyramidal Cell Unknown 0 377.06525580801 0.7 59.373066181178
61 3831 0.88623145399907 11 CA1 Pyramidal Cell Unknown 0 135.19063966802 0.66 34.151191445114
62 3372 0.79703313633355 2 CA1 Pyramidal Cell Unknown 0 167.8736043511 0.6 43.810668686115
63 2307 0.53296857059851 11 CA1 Pyramidal Cell Unknown 0.86692674469007 159.43801214062 0.71 39.745878950215
64 7042 1.622658861805 13 CA1 Pyramidal Cell Unknown 0.99403578528827 108.57441882162 0.63 36.006647355345
65 4899 1.1345884667102 11 CA1 Pyramidal Cell Unknown 0 693.06247116212 0.7 94.572462868356
66 1733 0.61497033681886 12 CA1 Pyramidal Cell Unknown 5.7703404500866 151.74245798013 0.67 45.041384107769
67 12820 2.9573720653417 2 CA1 Pyramidal Cell Unknown 0.39001560062402 170.03320754235 0.64 36.151046403174
68 26057 6.0170027145095 10 CA1 Narrow Interneuron Unknown 1.2280769083164 125.42069790144 0.29 37.38736552693
69 5352 1.2332761548993 10 CA1 Pyramidal Cell Unknown 2.2421524663677 82.250169591149 0.68 36.147888608591
70 11562 2.664087557097 11 CA1 Pyramidal Cell Unknown 0.17298045320879 267.78183895446 0.68 55.884939792994
71 2844 0.66032617326773 1 CA1 Pyramidal Cell Unknown 1.0548523206751 126.35084584924 0.58 36.652154430127
72 1420 0.34124441625306 3 CA1 Pyramidal Cell Unknown 0 198.90536098823 0.69 54.501217045334
73 5520 1.2731369871642 4 CA1 Pyramidal Cell Unknown 1.4492753623188 92.392566176744 0.61 99.643257041691
74 2568 0.74307821772111 12 CA1 Pyramidal Cell Unknown 5.0623052959502 166.99528003774 0.71 34.630602215614
75 2852 0.65741366158376 5 CA1 Pyramidal Cell Unknown 1.0518934081346 147.98798318601 0.73 26.954349958843
76 42769 9.8546807291049 9 CA1 Narrow Interneuron Unknown 0.32733989571886 82.532803976697 0.37 120.18035970853
77 2085 0.48110543769479 11 CA1 Pyramidal Cell Unknown 0 422.42529805438 0.72 58.89147777532
78 4643 1.0701057926223 4 CA1 Pyramidal Cell Unknown 4.5229377557614 147.78130772028 0.71 41.040917422858
79 10229 2.3572291475382 11 CA1 Pyramidal Cell Unknown 0 352.80843769436 0.6 90.460047955028
80 5057 1.1664842300247 5 CA1 Pyramidal Cell Unknown 3.9549139806209 181.69388223426 0.74 38.762774735083
81 7083 1.6343430318275 2 CA1 Narrow Interneuron Unknown 0.98828180149654 81.921525616129 0.38 67.716010267599
82 4890 1.1278272093988 11 CA1 Pyramidal Cell Unknown 2.6584867075665 122.53492320908 0.7 28.74580250342
83 2684 0.621542323466 11 CA1 Pyramidal Cell Unknown 0 318.80352008421 0.67 43.314177399311
84 387 0.089313216673656 11 CA1 Pyramidal Cell Unknown 2.5839793281654 228.71624236891 0.66 22.50596421682
85 5106 1.1769696498345 5 CA1 Pyramidal Cell Unknown 2.3501762632197 108.38394946788 0.66 35.902336970595
86 7501 1.822725964074 2 CA1 Pyramidal Cell Unknown 4.2660978536195 192.15697839045 0.67 46.431952820116
87 30770 7.0953163982481 2 CA1 Narrow Interneuron Unknown 1.1699707507312 112.96846701954 0.31 72.413693646906
88 3956 0.93548246319769 2 CA1 Pyramidal Cell Unknown 2.2750252780586 119.44710216582 0.6 35.363070591734
89 3540 0.81801560598157 13 CA1 Pyramidal Cell Unknown 1.1299435028249 81.37631257434 0.54 46.658212848374
90 20569 4.7497873604785 7 CA1 Narrow Interneuron Unknown 1.16680441441 111.89288031883 0.38 0
91 18945 4.37313993675 5 CA1 Narrow Interneuron Unknown 4.0643969385062 111.93560385658 0.3 55.85929933812
92 1536 0.36259261795187 1 CA1 Pyramidal Cell Unknown 0 295.31077977388 0.72 50.333796515612
93 1361 0.31917909669126 3 CA1 Pyramidal Cell Unknown 0.73475385745775 119.2071533247 0.64 30.85848008334
94 1603 0.36964604569413 3 CA1 Pyramidal Cell Unknown 1.2476606363069 139.2501257039 0.63 34.615301447667
95 424 0.13972271697282 2 CA1 Pyramidal Cell Unknown 0 194.81719532625 0.61 37.552394172614
96 2530 0.58301859930726 13 CA1 Pyramidal Cell Unknown 1.9762845849802 189.65998806837 0.7 33.75550364134
97 861 0.20066456561622 11 CA1 Pyramidal Cell Unknown 0 190.54659614866 0.68 46.904347354649
98 1298 0.30223375895205 11 CA1 Pyramidal Cell Unknown 0 252.12261457341 0.63 33.287388079219
99 3008 0.69390516655535 2 CA1 Pyramidal Cell Unknown 2.3271276595745 183.19913145879 0.65 24.037581127652
100 1305 0.33119097187115 2 CA1 Pyramidal Cell Unknown 0 259.48049026494 0.72 24.824854727708
101 9362 2.1578981712239 10 CA1 Pyramidal Cell Unknown 0.32044434949797 121.90163070202 0.71 52.621210273019
102 815 0.21777557454808 4 CA1 Pyramidal Cell Unknown 0 281.83905935086 0.64 44.525336244349
103 21652 6.1786504910746 8 CA1 Wide Interneuron Unknown 0.046185109920562 108.29706784233 0.74 0
104 3471 0.80018307155886 11 CA1 Pyramidal Cell Unknown 0.57620282339383 201.78644788221 0.61 27.626533250482
105 3822 0.88804344302947 10 CA1 Pyramidal Cell Unknown 2.0931449502878 343.26546808859 0.73 27.117643726021
106 486 0.11501590367025 10 CA1 Pyramidal Cell Unknown 0 270.02154486016 0.74 37.21304764955
107 4139 0.95508586975377 11 CA1 Pyramidal Cell Unknown 1.449625513409 128.97787222509 0.66 25.944623349394
108 75837 17.474593467191 10 CA1 Narrow Interneuron Unknown 1.6878304785263 184.85760980447 0.25 113.20040084329
109 27485 6.3344860784313 6 CA1 Wide Interneuron Unknown 0.072766963798436 141.20684882709 0.69 114.11036767674
110 1477 0.34180308416536 11 CA1 Pyramidal Cell Unknown 2.031144211239 281.17188204284 0.69 35.115102383468