Details for Peter_MS10_170317_153237_concat

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  • Date & time: 2017-03-14, 16:30:28

  • Location: Alexandria

  • Animal subject: MS10

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-04 19:31:39 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:38:45 by Peter Petersen

  • Notes:
    recordingID 61. Cooling during exploration on the circular maze. Second behavioral session after reimplant with cooling

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS10_170317_153237 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 2463.372
Peter_MS10_170317_161639 Homecage_Sleep Homecage Homecage_Rat 5439.672

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 108793000 64 7 0.195

Implanted probes

MS10 : Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, -2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 18, 19, 20
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 3 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5,6,7,8 ArduinoRemote Remote Button A-D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1,2,3 Accelerometer Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) adc 3 ch_opto_on
Intan Technologies, RHD2000 USB interface board (256ch) adc 4 ch_opto_off
dig 3 ch_camera_sync

Equipment

File names

Epoch

Type

Framerate

Notes
Intan Technologies, RHD2000 USB interface board (256ch) Take 2017-03-17 03.35.17 PM.csv 1 Head position 120
Point Grey, Chameleon3 1.3 MP Color USB3 Vision (ON Semi PYTHON 1300) Basler acA1300-200uc (21965891)_20170317_153511774.avi 1 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 47
Cortical 7
Ripple 47 3
Bad 28, 25, 26, 33, 24, 32, 31 6
RippleNoise 19

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
linear_track_slope 10,-10,0 degrees of incline of linear track
CoolingSession 1
pos_x_limits -70,240
pos_y_limits -30,30
cooling_onsets 642.2841 8*60+8+154.2841
cooling_offsets 1422.2841 8*60+8+13*60+154.2841
time_frame 0,18880

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2017-04-19_143041 1:64 Peter Petersen Yes 42 22498

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 37202 6.8399134635667 3 CA1 Pyramidal Cell Unknown 22.47191011236 119.51169133471 0.6 45.843260893583
2 46832 8.6097700501799 2 CA1 Pyramidal Cell Unknown 30.620088828152 126.93965383031 0.64 0
3 7163 1.3185469421257 3 CA1 Pyramidal Cell Unknown 0.27921262041044 212.56829647226 0.59 29.341599610077
4 11599 2.132487403152 3 CA1 Pyramidal Cell Unknown 10.345719458574 105.53627542355 0.66 22.656079755675
5 3650 0.67102949823613 2 CA1 Wide Interneuron Unknown 6.027397260274 118.89871224771 0.71 17.926051937746
6 29598 5.4413953739425 3 CA1 Pyramidal Cell Unknown 2.8718156632205 76.566560541424 0.67 46.868079567543
7 1040 0.19394051689567 3 CA1 Wide Interneuron Unknown 49.038461538462 118.33432254047 0.68 5.1098941277758
8 14961 2.7507024118371 3 CA1 Pyramidal Cell Unknown 6.2830024730967 131.75132107078 0.66 19.568222881695
9 7547 1.3874828912117 2 CA1 Pyramidal Cell Unknown 7.0226580098052 116.71446300758 0.74 11.559326564281
10 15969 2.9778404864518 3 CA1 Pyramidal Cell Unknown 5.134948963617 120.54454500459 0.6 38.80937964734
11 22513 4.1402570416783 2 CA1 Pyramidal Cell Unknown 11.371207746635 85.954930940271 0.63 33.695256159841
12 11671 2.1456048917218 2 CA1 Pyramidal Cell Unknown 12.42395681604 86.95088286278 0.63 28.210272317914
13 7163 1.3185469421257 3 CA1 Pyramidal Cell Unknown 0.27921262041044 215.14704908446 0.6 29.341599610077
14 14961 2.7507024118371 3 CA1 Pyramidal Cell Unknown 6.2830024730967 129.34622406141 0.65 19.568222881695
15 3650 0.67102949823613 2 CA1 Wide Interneuron Unknown 6.027397260274 116.91294287061 0.73 17.926051937746
16 29598 5.4413953739425 3 CA1 Pyramidal Cell Unknown 2.8718156632205 93.613535512546 0.72 46.868079567543
17 1040 0.19394051689567 3 CA1 Wide Interneuron Unknown 49.038461538462 119.07422116253 0.74 5.1098941277758
18 7547 1.3874828912117 2 CA1 Pyramidal Cell Unknown 7.0226580098052 117.64348608205 0.8 11.559326564281
19 15969 2.9778404864518 3 CA1 Pyramidal Cell Unknown 5.134948963617 120.19989743356 0.54 38.80937964734
20 22513 4.1402570416783 2 CA1 Pyramidal Cell Unknown 11.371207746635 85.583501444492 0.66 33.695256159841
21 11671 2.1456048917218 2 CA1 Pyramidal Cell Unknown 12.42395681604 87.024433835247 0.62 28.210272317914
22 7163 1.3185469421257 3 CA1 Pyramidal Cell Unknown 0.27921262041044 215.14704908446 0.6 29.341599610077
23 3650 0.67102949823613 2 CA1 Wide Interneuron Unknown 6.027397260274 116.91294287061 0.73 17.926051937746
24 14961 2.7507024118371 3 CA1 Pyramidal Cell Unknown 6.2830024730967 129.34622406141 0.65 19.568222881695
25 1040 0.19394051689567 3 CA1 Wide Interneuron Unknown 49.038461538462 119.07422116253 0.74 5.1098941277758
26 29598 5.4413953739425 3 CA1 Pyramidal Cell Unknown 2.8718156632205 93.613535512546 0.72 46.868079567543
27 22513 4.1402570416783 2 CA1 Pyramidal Cell Unknown 11.371207746635 85.583501444492 0.66 33.695256159841
28 7547 1.3874828912117 2 CA1 Pyramidal Cell Unknown 7.0226580098052 117.64348608205 0.8 11.559326564281
29 15969 2.9778404864518 3 CA1 Pyramidal Cell Unknown 5.134948963617 120.19989743356 0.54 38.80937964734
30 11671 2.1456048917218 2 CA1 Pyramidal Cell Unknown 12.42395681604 87.024433835247 0.62 28.210272317914
31 46832 8.6097700501799 2 CA1 Pyramidal Cell Unknown 30.620088828152 124.36571986613 0.65 0
32 37202 6.8399134635667 3 CA1 Pyramidal Cell Unknown 22.47191011236 124.41660150871 0.62 45.843260893583
33 11599 2.132487403152 3 CA1 Pyramidal Cell Unknown 10.345719458574 101.85627553852 0.67 22.656079755675
34 7163 1.3185469421257 3 CA1 Pyramidal Cell Unknown 0.27921262041044 215.14704908446 0.6 29.341599610077
35 3650 0.67102949823613 2 CA1 Wide Interneuron Unknown 6.027397260274 116.91294287061 0.73 17.926051937746
36 14961 2.7507024118371 3 CA1 Pyramidal Cell Unknown 6.2830024730967 129.34622406141 0.65 19.568222881695
37 1040 0.19394051689567 3 CA1 Wide Interneuron Unknown 49.038461538462 119.07422116253 0.74 5.1098941277758
38 29598 5.4413953739425 3 CA1 Pyramidal Cell Unknown 2.8718156632205 93.613535512546 0.72 46.868079567543
39 7547 1.3874828912117 2 CA1 Pyramidal Cell Unknown 7.0226580098052 117.64348608205 0.8 11.559326564281
40 22513 4.1402570416783 2 CA1 Pyramidal Cell Unknown 11.371207746635 85.583501444492 0.66 33.695256159841
41 15969 2.9778404864518 3 CA1 Pyramidal Cell Unknown 5.134948963617 120.19989743356 0.54 38.80937964734
42 11671 2.1456048917218 2 CA1 Pyramidal Cell Unknown 12.42395681604 87.024433835247 0.62 28.210272317914