Details for Peter_MS12_170715_111545_concat

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  • Date & time: 2017-07-15, 11:15:45

  • Location: Alexandria

  • Animal subject: MS12

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-05 20:50:29 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:41:27 by Peter Petersen

  • Notes:
    recordingID 79

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS12_170715_111545 Homecage_Sleep Homecage Homecage_Rat 13520.772
Peter_MS12_170715_151341 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 16432.416
Peter_MS12_170715_162313 Homecage_Sleep Homecage Homecage_Rat 25085.628

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit

Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 501713000 128 12 0.195

Implanted probes

MS12 : #1 Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS12 : #2 Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label

1 51, 58, 52, 57, 49, 60, 50, 59, 54, 55, 53, 56
2 63, 38, 64, 39, 61, 41, 62, 42, 33, 37, 34, 35
3 47, 17, 46, 20, 45, 19, 43, 21, 48, 18, 44, 22
4 28, 1, 25, 2, 23, 3, 24, 4, 27, 31, 29, 32
5 8, 13, 7, 14, 6, 15, 5, 16, 9, 12, 10, 11
6 30, 36, 26, 40
7 115, 122, 116, 121, 113, 124, 114, 123, 118, 119, 117, 120
8 127, 102, 128, 103, 125, 105, 126, 106, 97, 101, 98, 99
9 111, 81, 110, 84, 109, 83, 107, 85, 112, 82, 108, 86
10 92, 65, 89, 66, 87, 67, 88, 68, 91, 95, 93, 96
11 72, 77, 71, 78, 70, 79, 69, 80, 73, 76, 74, 75
12 94, 100, 90, 104
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description

Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes

OptiTrack, Flex 13 Take 2017-07-15 03.13.49 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20170715_151345045.avi 2 Video

Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups

CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Theta 9 4
Ripple 9 4
Cortical 6, 12
GammaPhaseCoupling 32 4

Analysis tags

Tag

Value

Description


Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID

KiloSort Phy Kilosort_2017-07-16_232355 Peter Petersen Yes 53 22618

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 12066 0.63211231953828 9 CA1 Pyramidal Cell Unknown 1.408917619758 184.06790257926 0.72 38.106409600188
2 22219 1.0884920897013 9 CA1 Pyramidal Cell Unknown 3.6455286016472 152.49379575017 0.68 35.737955122019
3 366110 14.594472921105 4 CA1 Narrow Interneuron Unknown 0.54082106470733 143.06171793694 0.33 0
4 25526 1.0179173289026 3 CA1 Pyramidal Cell Unknown 2.9773564209042 87.120975531817 0.69 54.354031859366
5 46547 1.8563453916068 3 CA1 Pyramidal Cell Unknown 5.0701441553698 114.63551943488 0.69 55.300300302756
6 89837 3.5812591965175 9 CA1 Pyramidal Cell Unknown 10.74167659205 70.40365637975 0.66 0
7 25960 1.036084376285 8 CA1 Pyramidal Cell Unknown 2.3497688751926 129.82423714898 0.7 38.098976602282
8 3349 0.13458688146824 11 CA1 Pyramidal Cell Unknown 1.7915795759928 103.28944536556 0.79 29.738135516571
9 67369 2.6863408305386 11 CA1 Pyramidal Cell Unknown 13.730350754798 94.297501217691 0.7 52.276056759845
10 17575 0.70072077115344 8 CA1 Pyramidal Cell Unknown 1.5362731152205 119.43531152421 0.71 36.76062329769
11 2293 0.10013654292337 3 CA1 Pyramidal Cell Unknown 1.7444395987789 206.54851148034 0.74 31.380201070113
12 2038 0.082820210720868 11 CA1 Pyramidal Cell Unknown 2.4533856722277 215.09435313885 0.78 26.856176242924
13 2704 0.22880003036 9 CA1 Pyramidal Cell Unknown 0 327.87735108957 0.73 60.977979100351
14 8136 0.32486841222133 5 CA1 Pyramidal Cell Unknown 3.1956735496559 104.3884367346 0.73 45.278191631573
15 5294 0.68650110660698 3 CA1 Pyramidal Cell Unknown 2.6445032111825 261.44800750971 0.73 32.31883143528
16 4436 0.64957573742661 3 CA1 Pyramidal Cell Unknown 0.22542831379621 330.9559041791 0.7 59.21933515954
17 9046 0.36101538814523 5 CA1 Pyramidal Cell Unknown 3.8691134202963 69.672873653158 0.65 50.832219021598
18 15335 0.61235210022145 10 CA1 Pyramidal Cell Unknown 0.52168242582328 170.27439374519 0.72 36.211181336663
19 7852 0.66353854551565 9 CA1 Pyramidal Cell Unknown 10.3158430973 117.65319618394 0.66 43.987766257774
20 12179 0.74173837799071 5 CA1 Pyramidal Cell Unknown 4.9265128499877 131.70202716762 0.69 38.490507129204
21 21913 0.87372502180579 10 CA1 Pyramidal Cell Unknown 4.426596084516 142.24152518875 0.71 35.024037271401
22 12488 1.4433518578321 9 CA1 Pyramidal Cell Unknown 3.0429212043562 96.826307451609 0.69 34.382186667277
23 8132 0.32443389068818 8 CA1 Pyramidal Cell Unknown 0 195.71142559542 0.75 54.57051954589
24 7709 0.46936967707372 4 CA1 Pyramidal Cell Unknown 3.2429627707874 164.00511243355 0.76 40.599155895567
25 28898 1.9109675724515 5 CA1 Pyramidal Cell Unknown 4.0141186241262 125.24104087928 0.65 168.67776353478
26 4793 0.29773803482666 4 CA1 Wide Interneuron Unknown 0.41727519298978 222.03515509755 0.14 93.636710881318
27 9181 0.38462606912044 3 CA1 Pyramidal Cell Unknown 0.43568238753948 178.71118553533 0.74 42.572911037194
28 12492 0.76138984536338 4 CA1 Pyramidal Cell Unknown 2.4815882164585 182.60362703265 0.73 34.651224428229
29 17081 0.68094069615082 3 CA1 Pyramidal Cell Unknown 4.9762894444119 123.66579451561 0.74 38.141507268094
30 22674 1.63991732644 9 CA1 Pyramidal Cell Unknown 4.1457175619652 64.949639802455 0.72 41.741886600424
31 54361 2.1671090428508 10 CA1 Pyramidal Cell Unknown 6.640790272438 82.516747392498 0.72 42.682908062128
32 30763 1.2264149854588 4 CA1 Pyramidal Cell Unknown 5.9161980301011 87.379752306402 0.69 39.438762946308
33 31750 1.2658275766103 3 CA1 Pyramidal Cell Unknown 9.8582677165354 73.857271714225 0.62 53.896603123801
34 45986 1.8334399906262 10 CA1 Pyramidal Cell Unknown 8.1329100160919 91.066497457674 0.69 40.242175048042
35 43392 1.7300233116375 10 CA1 Pyramidal Cell Unknown 7.3285398230088 83.512151045405 0.63 38.363278312699
36 27030 1.0777889982892 3 CA1 Pyramidal Cell Unknown 8.7680355160932 129.61521047615 0.71 41.441006157897
37 64781 2.5824287942728 10 CA1 Pyramidal Cell Unknown 8.5673268396598 79.691215531513 0.64 47.415785232177
38 101165 4.0329650854634 8 CA1 Pyramidal Cell Unknown 18.603271882568 69.221088590694 0.64 0
39 103961 4.1443613558126 11 CA1 Narrow Interneuron Unknown 4.1169284635584 76.261056877907 0.42 0
40 113326 4.5181752306004 6 CA1 Wide Interneuron Unknown 1.0853643471048 93.438044520184 0.63 0
41 131488 5.2416126175527 10 CA1 Narrow Interneuron Unknown 1.2548673643222 77.359584679787 0.38 83.620037728772
42 9 CA1 Pyramidal Cell 1 Superficial 4.1457175619652 60.003600158772 0.725 41.741886600424
43 10 CA1 Pyramidal Cell 1 Superficial 6.640790272438 75.443782123213 0.775 42.682908062128
44 4 CA1 Pyramidal Cell 1 Deep 5.9161980301011 80.085941553165 0.675 39.438762946308
45 3 CA1 Pyramidal Cell 3 Deep 9.8582677165354 64.805077795275 0.625 53.896603123801
46 3 CA1 Pyramidal Cell 1 Deep 8.7680355160932 123.70146392897 0.7 41.441006157897
47 10 CA1 Pyramidal Cell 3 Superficial 7.3285398230088 78.582415998341 0.65 38.363278312699
48 10 CA1 Pyramidal Cell 1 Superficial 8.1329100160919 82.547525007611 0.7 40.242175048042
49 10 CA1 Pyramidal Cell 1 Superficial 8.5673268396598 72.995395331965 0.625 47.415785232177
50 8 CA1 Pyramidal Cell 3 Superficial 18.603271882568 63.241357584145 0.675 0
51 11 CA1 Narrow Interneuron Deep 4.1169284635584 69.034477303989 0.4 0
52 6 CA1 Wide Interneuron Cortical 1.0853643471048 91.1710002559 0.575 0
53 10 CA1 Narrow Interneuron Superficial 1.2548673643222 72.342397291007 0.275 83.620037728772