Details for Peter_MS13_171130_121758_concat

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  • Date & time: 2017-11-29, 10:55:07

  • Location: Alexandria

  • Animal subject: MS13

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-06 10:04:36 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:43:29 by Peter Petersen

  • Notes:
    recordingID = 92

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS13_171130_121758 Homecage_Sleep Homecage Homecage_Rat 6767.1
Peter_MS13_171130_143907 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 9416.1
Peter_MS13_171130_153044 Homecage_Sleep Homecage Homecage_Rat 16222.872

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 324457000 128 8 0.195

Implanted probes

MS13 : #1 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS13 : #2 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 43, 41, 58, 52, 56, 50, 44, 39, 55, 54, 40, 51, 53, 42, 49, 38
2 46, 37, 34, 60, 48, 45, 18, 35, 64, 62, 33, 47, 61, 36, 57, 59
3 20, 27, 32, 6, 63, 19, 1, 29, 2, 4, 31, 17, 3, 30, 7, 5
4 21, 23, 8, 14, 10, 16, 22, 25, 9, 12, 13, 11, 24, 15, 28
5 107, 105, 122, 116, 120, 114, 108, 103, 119, 118, 104, 115, 117, 106, 113, 102
6 110, 101, 98, 124, 112, 109, 99, 128, 126, 97, 111, 125, 100, 121, 123
7 91, 70, 127, 83, 65, 93, 66, 68, 95, 81, 67, 94, 71, 69
8 85, 87, 72, 74, 80, 89, 73, 76, 77, 75, 79
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2017-11-30 02.39.08 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171130_143915992.avi 2 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171130_121802817.avi 1 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171130_153047669.avi 3 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 83 7
Ripple 83 7
Bad 26, 78, 82, 83, 86, 88, 90, 92, 96
GammaPhaseCoupling 79 8

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2017-12-14_170737 Peter Petersen Yes 123 22671

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 39684 2.4463769223434 7 CA1 Wide Interneuron Deep 0.050398145348251 658.99124026441 0.69 85.679243675918
2 2470 0.15641663398066 7 CA1 Pyramidal Cell Superficial 3.2388663967611 361.42420393405 0.71 35.280219089498
3 15085 0.93010353048063 2 CA1 Pyramidal Cell Superficial 2.9168047729533 125.47862313493 0.72 48.357137171076
4 6752 0.41810140430955 7 CA1 Pyramidal Cell Deep 1.3329383886256 497.41290439266 0.73 59.712421488819
5 26345 1.6239970858668 7 CA1 Pyramidal Cell Deep 4.1374074776998 231.09009602767 0.7 44.294310432046
6 2813 0.17605436789197 2 CA1 Pyramidal Cell Deep 1.066477070743 261.23264995033 0.75 30.428823476958
7 19489 1.2016415574202 2 CA1 Pyramidal Cell Deep 5.952075529786 154.32281748516 0.71 39.236604156739
8 16882 1.0408778061278 3 CA1 Pyramidal Cell Superficial 2.3693875133278 169.9633349876 0.61 55.575213447449
9 1092 0.067589195850951 7 CA1 Pyramidal Cell Deep 5.4945054945055 338.9254610142 0.72 16.656752710754
10 2789 0.1735067498356 1 CA1 Pyramidal Cell Deep 3.9440659734672 53.920222582533 0.7 0
11 1221 0.07753493640254 7 CA1 Pyramidal Cell Deep 3.2760032760033 284.47590299022 0.75 25.569036145868
12 1755 0.12013831472834 3 CA1 Pyramidal Cell Superficial 0 215.60792371451 0.67 42.521220277328
13 2053 0.14488725414475 8 CA1 Pyramidal Cell Superficial 2.9225523623965 219.82402104173 0.69 37.168371357711
14 537 0.065252970577691 7 CA1 Pyramidal Cell Deep 0 204.73715089415 0.65 50.182054417169
15 2109 0.19388096951369 7 CA1 Pyramidal Cell Deep 0 507.88831673299 0.72 69.799303726348
16 683 0.045523695056616 7 CA1 Pyramidal Cell Deep 1.4641288433382 553.44709229181 0.7 42.303882040877
17 863 0.14386749347076 8 CA1 Pyramidal Cell Superficial 1.1587485515643 257.70704225846 0.71 46.150079654706
18 1790 0.19031403522259 8 CA1 Wide Interneuron Superficial 1.1173184357542 200.66247560718 0.72 52.268592071906
19 2455 0.1607343807855 3 CA1 Wide Interneuron Superficial 0.40733197556008 187.63281363937 0.59 58.000018388895
20 2683 0.61461640743126 8 CA1 Wide Interneuron Superficial 4.8453224002982 266.65634276805 0.73 47.979663824177
21 1911 0.11930221464397 3 CA1 Pyramidal Cell Superficial 0.52328623757195 214.90016997623 0.62 43.596870130524
22 1683 0.10394089526671 8 CA1 Wide Interneuron Superficial 0.5941770647653 144.74395636106 0.73 23.20471153943
23 3098 0.19584924147456 3 CA1 Pyramidal Cell Superficial 0.32278889606198 229.82429508068 0.64 54.980615004661
24 2578 0.16359960195544 7 CA1 Wide Interneuron Deep 0.38789759503491 195.10766419518 0.69 41.79541373117
25 2383 0.14973228081824 4 CA1 Pyramidal Cell Deep 2.0981955518254 127.10359610021 0.67 39.360073872172
26 2942 0.21358021870832 2 CA1 Pyramidal Cell Superficial 4.418762746431 169.70968931227 0.65 41.84932826551
27 4629 0.30424504154606 7 CA1 Pyramidal Cell Deep 2.1602937999568 138.48212378322 0.67 30.192514948092
28 4411 0.2729254365851 7 CA1 Pyramidal Cell Deep 3.4005894355022 157.68365345448 0.62 32.406953360855
29 1956 0.18116599266465 7 CA1 Wide Interneuron Deep 0 585.98968611523 0.63 35.2361765942
30 3808 0.23568394637964 3 CA1 Pyramidal Cell Deep 0 151.02415336495 0.55 66.509393895236
31 5723 0.35666478601764 7 CA1 Pyramidal Cell Deep 1.572601782282 241.47990526099 0.71 47.789241022623
32 4544 0.28017269650174 2 CA1 Pyramidal Cell Superficial 0.44014084507042 112.29789543809 0.64 52.39778312393
33 4559 0.31314837025763 8 CA1 Pyramidal Cell Superficial 2.1934634788331 137.90577329619 0.66 33.210675352609
34 4795 0.29557488946146 7 CA1 Pyramidal Cell Deep 1.0427528675704 209.98528865953 0.69 40.450257567756
35 6008 0.37052715390948 2 CA1 Pyramidal Cell Superficial 1.1651131824234 93.957643990152 0.58 48.377693403338
36 4967 0.30812796726317 7 CA1 Pyramidal Cell Deep 1.4093013891685 277.74849241753 0.72 40.303549885426
37 5311 0.32821667068708 7 CA1 Pyramidal Cell Superficial 5.0837883637733 219.64219977659 0.67 29.649671781951
38 5499 0.34626931866691 7 CA1 Pyramidal Cell Deep 3.4551736679396 113.30223771468 0.71 29.301278317542
39 6780 0.42043844288204 2 CA1 Pyramidal Cell Superficial 2.212389380531 142.24676677492 0.68 45.17491350268
40 47200 2.9098562236957 7 CA1 Wide Interneuron Deep 2.5635593220339 191.31089169104 0.67 70.538763657044
41 7565 0.46669590903651 7 CA1 Pyramidal Cell Deep 3.0403172504957 69.544380295733 0.6 36.052170174968
42 7331 0.46038657532214 3 CA1 Pyramidal Cell Superficial 0.54562815441277 233.94926487091 0.66 49.894935394178
43 7286 0.44947418768629 3 CA1 Pyramidal Cell Superficial 2.1959923140269 150.63210171002 0.68 37.712749866308
44 18986 1.1709237540595 7 CA1 Pyramidal Cell Deep 3.6869272095228 89.794585775051 0.69 42.664222003688
45 89641 5.5258314094364 2 CA1 Pyramidal Cell Deep 1.7737419261276 47.357457365128 0.63 70.673816884522
46 330529 20.374391879304 2 CA1 Narrow Interneuron Deep 2.3114461968541 145.10380463063 0.26 283.13806040302
47 5656 0.34942050037102 2 CA1 Pyramidal Cell Deep 1.2376237623762 131.69248641287 0.71 43.670262443374
48 6015 0.41841667790096 3 CA1 Pyramidal Cell Superficial 0.66500415627598 321.39139692965 0.64 62.868155871322
49 6472 0.39981726769389 3 CA1 Pyramidal Cell Deep 0.7725587144623 226.02733975445 0.69 48.049325522891
50 6782 0.4269711291056 8 CA1 Pyramidal Cell Superficial 1.1795930404011 116.00040419126 0.31 46.374780091322
51 10233 0.83479605174996 8 CA1 Pyramidal Cell Superficial 6.0588292778266 149.96528452357 0.62 29.192454310786
52 8977 0.57647588526784 3 CA1 Pyramidal Cell Superficial 1.4481452601092 210.41002470121 0.65 57.015840926705
53 10593 0.65456946739123 2 CA1 Pyramidal Cell Deep 1.1328235627301 114.33858334482 0.68 45.331418694991
54 8634 0.53287176294753 8 CA1 Pyramidal Cell Superficial 2.8955293027565 114.99741618845 0.63 63.636284011617
55 10321 0.63764666135783 7 CA1 Wide Interneuron Superficial 1.5502373800988 107.84214806261 0.63 40.726645976958
56 9494 0.58921898988756 8 CA1 Pyramidal Cell Superficial 3.791868548557 99.219952797601 0.68 33.577798990298
57 35926 2.2981067690324 2 CA1 Narrow Interneuron Deep 1.0298947837221 50.658535637173 0.44 63.463443966119
58 16027 2.3684723478969 8 CA1 Narrow Interneuron Superficial 0.87352592500156 248.25288298734 0.24 43.781713441683
59 10537 0.65566326155374 7 CA1 Pyramidal Cell Deep 1.3286514188099 91.616243430299 0.71 39.658180889522
60 2953 0.31766936838745 8 CA1 Pyramidal Cell Superficial 0 126.52792163494 0.62 37.038787332081
61 14160 0.87400663259314 2 CA1 Pyramidal Cell Deep 3.6016949152542 60.951806776698 0.68 45.884582307937
62 13377 0.8297674999777 2 CA1 Wide Interneuron Deep 0.074755176795993 153.65953583152 0.68 47.69485877716
63 12791 0.78851999466721 2 CA1 Pyramidal Cell Deep 1.1726995543742 94.649544400837 0.71 49.454170300414
64 12618 0.78083053970446 3 CA1 Pyramidal Cell Deep 1.6642891107941 90.539185207625 0.68 43.183079460372
65 12733 0.7862180550367 2 CA1 Wide Interneuron Superficial 0.70682478598916 84.798160467496 0.62 57.107923907611
66 12692 0.78537283076762 8 CA1 Pyramidal Cell Superficial 2.4424834541443 54.66577992442 0.64 51.563656108521
67 12810 0.78994301532386 7 CA1 Pyramidal Cell Deep 1.6393442622951 88.920672872899 0.62 41.351131254631
68 13305 0.8202900535765 8 CA1 Pyramidal Cell Superficial 5.1108605787298 105.91396485169 0.73 31.679572985708
69 13549 0.83549874517634 7 CA1 Pyramidal Cell Superficial 8.0448741604546 142.13821359504 0.69 29.74168581817
70 12901 0.82521105023672 8 CA1 Pyramidal Cell Superficial 3.8756685528254 66.01889395208 0.62 36.900029260558
71 34186 2.107318813601 3 CA1 Pyramidal Cell Deep 3.0421810097701 82.313658578141 0.67 47.932562855058
72 15039 0.92710896862092 2 CA1 Pyramidal Cell Deep 1.4628632222887 210.99972846873 0.73 43.126427370626
73 13998 0.8633314464893 2 CA1 Pyramidal Cell Superficial 4.7149592798971 95.55648999687 0.61 53.764875390383
74 14604 0.90052918576459 3 CA1 Pyramidal Cell Superficial 4.5877841687209 89.118143300816 0.7 39.066048061736
75 18424 1.1360939868406 3 CA1 Pyramidal Cell Deep 1.4112027789839 96.487489873421 0.62 50.163187951053
76 14333 0.88390955843318 7 CA1 Pyramidal Cell Superficial 2.3721481894928 97.219571479409 0.65 36.766567590339
77 16799 1.0359702288711 3 CA1 Pyramidal Cell Deep 3.0954223465682 59.302400571032 0.61 48.783190502719
78 18241 1.1245393552263 4 CA1 Pyramidal Cell Deep 5.2628693602324 59.855607945133 0.7 58.841020239755
79 17824 1.0999829210742 8 CA1 Pyramidal Cell Superficial 4.9371633752244 81.051434968998 0.62 39.900111583374
80 15124 0.9323354610923 6 CA1 Pyramidal Cell Deep 11.438772811426 59.312762387326 0.73 0
81 17865 1.1014075044636 3 CA1 Pyramidal Cell Superficial 2.7427931710048 58.601383653619 0.67 50.765151127011
82 18121 1.1176247674234 8 CA1 Pyramidal Cell Superficial 2.4833066607803 50.303483940732 0.72 42.153323673117
83 17576 1.0837691456042 2 CA1 Pyramidal Cell Superficial 6.5999089667729 69.195881665448 0.73 63.180481579512
84 20650 1.2732427457395 2 CA1 Pyramidal Cell Deep 4.7941888619855 98.418769262141 0.71 38.715824613952
85 19168 1.1819262790687 3 CA1 Pyramidal Cell Superficial 4.9040066777963 73.924986952374 0.65 67.634337748324
86 30472 1.8791262695553 7 CA1 Narrow Interneuron Deep 0.72197427146233 103.92967583115 0.32 61.462423821048
87 23362 1.440171575835 8 CA1 Pyramidal Cell Superficial 5.8642239534286 82.545658236699 0.73 42.235615540716
88 26841 1.6550216328981 4 CA1 Wide Interneuron Deep 1.6020267501211 87.940351855322 0.47 122.43128008407
89 19984 1.2319623647334 7 CA1 Wide Interneuron Deep 0.05004003202562 398.78996923581 0.67 75.124447593222
90 22769 1.4036071582017 2 CA1 Pyramidal Cell Deep 6.8953401554745 85.223174661847 0.65 53.400619627453
91 39665 2.4451543676532 3 CA1 Wide Interneuron Deep 0.27732257657885 106.35227446656 0.75 62.307981023361
92 27216 1.6777151590787 3 CA1 Pyramidal Cell Deep 3.4538506760729 56.259367473755 0.74 67.675549545458
93 21728 1.9798026777834 8 CA1 Narrow Interneuron Superficial 1.15058910162 159.87525808487 0.26 48.708333188
94 184 0.011806225221083 7 CA1 Wide Interneuron Deep 0 551.5206563882 0.67 23.477265971976
95 38230 2.3625589518094 7 CA1 Wide Interneuron Superficial 0.13078733978551 81.980483596062 0.55 94.576489256626
96 1185 0.089800099635673 7 CA1 Wide Interneuron Deep 0 602.61645086713 0.68 39.356563681526
97 5967 0.3679698268442 2 CA1 Pyramidal Cell Superficial 0.33517680576504 160.84478487376 0.63 40.437722779201
98 7258 0.45308267844039 8 CA1 Pyramidal Cell Superficial 4.2711490768807 121.07967774337 0.7 45.916029005263
99 3217 0.19851298103503 7 CA1 Pyramidal Cell Deep 0 321.89779106881 0.72 44.231591322308
100 7416 0.45727318528584 3 CA1 Pyramidal Cell Deep 2.0226537216828 147.37492679082 0.65 43.876614131336
101 80 0.012801929916539 8 CA1 Wide Interneuron Superficial 0 239.57047836674 0.76 47.164194272753
102 239 0.21054344301869 7 CA1 Pyramidal Cell Superficial 8.3682008368201 271.61397032819 0.63 26.926401758796
103 15199 0.93718145295522 3 CA1 Pyramidal Cell Deep 4.0792157378775 120.95372484269 0.71 56.534773805788
104 1980 0.12209568436524 3 CA1 Pyramidal Cell Deep 2.5252525252525 141.98573495999 0.71 43.309613037147
105 332 0.025685644132186 7 CA1 Pyramidal Cell Superficial 0 431.03493007324 0.68 55.335663985871
106 2406 0.16599569495754 7 CA1 Pyramidal Cell Deep 6.2344139650873 187.59792272364 0.74 30.971134079865
107 13135 0.81003523326414 7 CA1 Pyramidal Cell Superficial 1.9794442329654 85.035392873647 0.71 40.513331253742
108 293 0.018197840185922 7 CA1 Pyramidal Cell Deep 0 523.2547894054 0.7 27.208708294116
109 1436 0.11189800281974 7 CA1 Pyramidal Cell Superficial 0 469.62431675607 0.71 77.690910970797
110 5105 0.32339858271917 3 CA1 Pyramidal Cell Superficial 0.9794319294809 167.44713906152 0.65 39.704638610854
111 82097 5.0609824278827 3 CA1 Wide Interneuron Superficial 0.85264991412597 115.68324795214 0.59 77.565919648278
112 420 0.54907806850808 7 CA1 Pyramidal Cell Deep 7.1428571428571 252.67064081901 0.74 41.511812439447
113 1464 0.10042241963718 7 CA1 Pyramidal Cell Deep 3.4153005464481 493.61930335785 0.73 35.170109390604
114 8379 0.52036096730465 3 CA1 Pyramidal Cell Deep 6.4446831364125 362.53121456014 0.71 55.536147344709
115 6077 0.39604530159979 8 CA1 Pyramidal Cell Superficial 2.1392134276781 112.87088828708 0.69 29.298320249156
116 2309 0.14245893518622 7 CA1 Pyramidal Cell Deep 1.7323516673885 102.29938791489 0.76 27.486493153525
117 563 0.060758920028651 7 CA1 Wide Interneuron Deep 0 495.30772595126 0.68 36.596494759128
118 13127 0.80967759575061 3 CA1 Pyramidal Cell Deep 1.2188618877123 76.216617240123 0.69 50.966209089919
119 377 0.087524668984662 8 CA1 Wide Interneuron Superficial 0 347.23957217116 0.73 23.03066239404
120 10924 0.67960900434152 7 CA1 Wide Interneuron Deep 0.09154155986818 375.61083256977 0.63 87.818943341394
121 546 0.033739458782746 4 CA1 Pyramidal Cell Deep 0 92.211134557935 0.67 25.505431976242
122 9189 0.5665692494136 4 CA1 Pyramidal Cell Deep 2.6118184786157 89.818957797792 0.67 41.177710838783
123 2722 0.16842998432534 3 CA1 Pyramidal Cell Superficial 0.36737692872888 167.46504065431 0.51 58.056992525019