Details for YMV03_170818

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  • Date & time: 2017-08-18,

  • Location: Alexandria

  • Animal subject: YMV03

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:36:42 by Yuta Senzai
    Updated: 2020-06-27 18:41:46 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV03_170818 Homecage_Sleep Homecage Homecage_Mouse 8858.16

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 177163200 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 115 22768

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 289517 32.683877347106 1 VISp Narrow Interneuron Unknown 0.68044363543419 223.76094088524 0.25
2 233606 26.371973602355 1 VISp Narrow Interneuron Unknown 5.8731368201159 165.92728648103 0.2
3 55998 6.3220984878129 1 VISp Pyramidal Cell Unknown 8.5360191435408 156.30716517378 0.64
4 177858 20.078575781005 1 VISp Narrow Interneuron Unknown 0.28674560604527 995.51649808881 0.17
5 22494 2.5394961276833 1 VISp Wide Interneuron Unknown 0.88912598915266 255.95498306456 0.6
6 35221 3.976219226382 1 VISp Pyramidal Cell Unknown 0.45427443854519 241.41523412134 0.62
7 33715 3.8061315644946 1 VISp Wide Interneuron Unknown 1.8686044787187 118.28541537512 0.65
8 108149 12.209105769618 1 VISp Pyramidal Cell Unknown 3.4396989338783 161.90298272005 0.57
9 39768 4.4931018125765 1 VISp Narrow Interneuron Unknown 3.3443975055321 201.86125797834 0.22
10 143473 16.196941478097 1 VISp Narrow Interneuron Unknown 0.16727886083096 414.58929601334 0.25
11 24412 2.7560923108931 1 VISp Pyramidal Cell Unknown 1.1060134360151 302.50229669793 0.63
12 55360 6.2497536464183 1 VISp Wide Interneuron Unknown 2.2940751445087 344.4138685294 0.61
13 104907 11.843071663374 1 VISp Wide Interneuron Unknown 5.1092872734899 163.44937183927 0.53
14 25215 2.8465620422563 1 VISp Wide Interneuron Unknown 0 507.4066689945 0.65
15 40271 4.546645730487 1 VISp Pyramidal Cell Unknown 1.7630553003402 234.12514377939 0.58
16 41501 4.6853351133415 1 VISp Pyramidal Cell Unknown 1.2529818558589 109.86065454183 0.65
17 113851 12.852734107292 1 VISp Narrow Interneuron Unknown 24.540847247719 141.58756253107 0.15
18 17901 2.0214902675593 1 VISp Pyramidal Cell Unknown 3.6310820624546 81.5892195249 0.58
19 11662 1.3168114261563 1 VISp Pyramidal Cell Unknown 1.6292231178186 95.135027067261 0.7
20 50837 5.7390643952275 1 VISp Narrow Interneuron Unknown 21.677124928694 184.99079308595 0.24
21 43721 4.9365069582296 1 VISp Wide Interneuron Unknown 5.9925436289197 117.1054612794 0.65
22 6949 0.78482647285086 1 VISp Pyramidal Cell Unknown 2.0146783709886 99.561430846886 0.66
23 24710 2.7896424763269 1 VISp Wide Interneuron Unknown 1.9425333872926 110.67831816275 0.64
24 23160 2.6148763533531 1 VISp Pyramidal Cell Unknown 2.979274611399 147.5991619307 0.6
25 26761 3.0211040390516 1 VISp Pyramidal Cell Unknown 1.943126191099 107.27426819259 0.66
26 7266 0.82040432033767 1 VISp Wide Interneuron Unknown 0.41288191577209 158.77885812671 0.7
27 7818 0.88310525108864 1 VISp Wide Interneuron Unknown 0.25581990278844 119.3889759982 0.55
28 18651 2.1057902338584 1 VISp Pyramidal Cell Unknown 1.2867942737655 107.9634891273 0.57
29 3164 0.3590698013082 1 VISp Pyramidal Cell Unknown 0.31605562579014 150.6200284336 0.56
30 28022 3.1635237649252 1 VISp Pyramidal Cell Unknown 3.4258796659767 89.902574880803 0.72
31 27342 3.0869705517946 1 VISp Pyramidal Cell Unknown 3.3282130056324 98.192522241585 0.71
32 12857 1.4517288826926 1 VISp Wide Interneuron Unknown 1.3222369137435 103.61144936736 0.65
33 22083 2.4929709997977 1 VISp Wide Interneuron Unknown 3.7132635964316 94.995668068868 0.7
34 34902 3.9401262915352 1 VISp Narrow Interneuron Unknown 3.4668500372471 147.12726585548 0.21
35 24299 2.7432766901847 1 VISp Wide Interneuron Unknown 0.57615539734145 98.317030505707 0.5
36 15186 1.7148679776377 1 VISp Pyramidal Cell Unknown 1.8438035032267 148.30545567785 0.66
37 116040 13.101228355884 1 VISp Narrow Interneuron Unknown 0.24129610479145 159.2189091732 0.31
38 16242 1.8336908345546 1 VISp Narrow Interneuron Unknown 0.43098140623076 69.131647312741 0.41
39 12296 1.3882709340116 1 VISp Pyramidal Cell Unknown 2.5211450878334 117.86763031633 0.66
40 26666 3.0111239836116 1 VISp Wide Interneuron Unknown 2.2500562514063 109.39019370776 0.72
41 26086 2.9455264760187 1 VISp Pyramidal Cell Unknown 3.6801349382811 104.26003501711 0.64
42 9668 1.0916993092439 1 VISp Wide Interneuron Unknown 0.41373603640877 118.14801092582 0.66
43 12997 1.467901521551 1 VISp Wide Interneuron Unknown 1.3079941524967 127.80980166944 0.72
44 20165 2.2765406952027 1 VISp Pyramidal Cell Unknown 3.5705430200843 90.728135145177 0.68
45 21461 2.4232157003872 1 VISp Pyramidal Cell Unknown 2.0036344997903 129.23981458662 0.62
46 9573 1.0815095677332 1 VISp Wide Interneuron Unknown 2.0892092343048 138.2506760456 0.66
47 11624 1.3124649820449 1 VISp Pyramidal Cell Unknown 2.0646937370957 154.36041845878 0.7
48 4566 0.51565030872784 1 VISp Wide Interneuron Unknown 0.43802014892685 123.82933433563 0.67
49 6087 0.68729249083499 1 VISp Wide Interneuron Unknown 0.32856908164942 200.7344791135 0.62
50 23767 2.6834223985619 1 VISp Wide Interneuron Unknown 2.2299827491901 137.86317710529 0.69
51 2831 0.32002117407494 1 VISp Wide Interneuron Unknown 0.70646414694454 99.611753206641 0.63
52 8498 0.95960189507259 1 VISp Pyramidal Cell Unknown 0.58837373499647 125.85392221163 0.65
53 6665 0.75269844226714 1 VISp Wide Interneuron Unknown 1.6504126031508 142.43886859566 0.57
54 5274 0.59637597787384 1 VISp Pyramidal Cell Unknown 1.1376564277588 145.46257411944 0.62
55 3473 0.39444795591714 1 VISp Pyramidal Cell Unknown 0.86380650734236 175.20212527681 0.55
56 21603 2.4391710754348 1 VISp Pyramidal Cell Unknown 1.2498264129982 213.09928401793 0.69
57 1204 0.1500345422134 1 VISp Narrow Interneuron Unknown 0 972.44413850229 0.18
58 12212 1.3786921313467 1 VISp Pyramidal Cell Unknown 1.064526695054 141.66660789267 0.68
59 14077 1.5894575639304 1 VISp Pyramidal Cell Unknown 0.35518931590538 169.05966650812 0.68
60 33982 3.8363510758192 1 VISp Narrow Interneuron Unknown 0.20599140721558 117.21472502832 0.39
61 31495 3.556164055993 1 VISp Pyramidal Cell Unknown 1.619304651532 145.46670770019 0.52
62 2455 0.27736797115102 1 VISp Wide Interneuron Unknown 0.40733197556008 125.93058879142 0.59
63 26501 2.9927118471785 1 VISp Wide Interneuron Unknown 0.86789177766877 136.13456174729 0.69
64 3815 0.43130755860844 1 VISp Wide Interneuron Unknown 0 197.03821130738 0.65
65 24861 2.8068936748653 1 VISp Pyramidal Cell Unknown 2.9363259724066 137.83701314423 0.64
66 18222 2.0575530863262 1 VISp Pyramidal Cell Unknown 3.8415102623203 166.45404310443 0.62
67 4354 0.49178599357572 1 VISp Pyramidal Cell Unknown 1.1483693155719 289.4033952412 0.58
68 37568 4.2421831271683 1 VISp Wide Interneuron Unknown 1.0381175468484 160.93695430379 0.61
69 12617 1.4246454310225 1 VISp Narrow Interneuron Unknown 2.0607117381311 127.26633398748 0.32
70 44496 5.023450048729 1 VISp Wide Interneuron Unknown 1.7529665587918 105.85732558177 0.63
71 16662 1.8810245216473 1 VISp Pyramidal Cell Unknown 2.5807226023287 228.5683012308 0.63
72 12109 1.3673185328696 1 VISp Wide Interneuron Unknown 0.66066562061277 128.67790767274 0.61
73 2469 0.27984199819292 1 VISp Pyramidal Cell Unknown 0 252.45731038856 0.69
74 22717 2.5649254010579 1 VISp Narrow Interneuron Unknown 3.6536514504556 129.36854571968 0.28
75 17059 1.9272544210826 1 VISp Pyramidal Cell Unknown 0.99654141508881 118.42896375096 0.75
76 4347 0.49172098583893 1 VISp Pyramidal Cell Unknown 0.23004370830458 335.86825457501 0.72
77 11369 1.2838984437347 1 VISp Pyramidal Cell Unknown 2.3748790570851 82.66567238841 0.72
78 11420 1.2895776548488 1 VISp Pyramidal Cell Unknown 2.1891418563923 110.98868864967 0.63
79 21354 2.4117016386933 1 VISp Pyramidal Cell Unknown 0.5151259717149 199.04374616688 0.58
80 10495 1.1849732586989 1 VISp Wide Interneuron Unknown 0.19056693663649 338.91075625927 0.69
81 21737 2.4544750462278 1 VISp Pyramidal Cell Unknown 0.5060495928601 193.45597936448 0.61
82 58782 6.6363206636005 1 VISp Wide Interneuron Unknown 0.034024020958797 229.6208080503 0.52
83 16688 1.8841953103476 1 VISp Pyramidal Cell Unknown 2.5767018216683 97.305987755277 0.66
84 21294 2.4039554652066 1 VISp Narrow Interneuron Unknown 0.23480792711562 125.70908369777 0.32
85 17526 1.9802302382039 1 VISp Pyramidal Cell Unknown 2.2823234052265 146.67788625882 0.67
86 22231 2.5110403574765 1 VISp Pyramidal Cell Unknown 2.2041293688993 120.07859708202 0.71
87 43488 4.9094319978643 1 VISp Narrow Interneuron Unknown 2.3224797645327 106.78882204312 0.21
88 14459 1.6337712898385 1 VISp Pyramidal Cell Unknown 0.6224496853171 195.19070164661 0.62
89 21720 2.452857604236 1 VISp Narrow Interneuron Unknown 0.13812154696133 265.80116322221 0.15
90 14512 1.6392812729855 1 VISp Narrow Interneuron Unknown 1.3781697905182 141.00142327785 0.22
91 28370 3.2030873742905 1 VISp Pyramidal Cell Unknown 0.17624250969334 357.77273045945 0.64
92 30220 3.4128991902705 1 VISp Pyramidal Cell Unknown 0.16545334215751 329.46507151328 0.57
93 21606 2.4391793436078 1 VISp Pyramidal Cell Unknown 0.32398407849671 205.63058319289 0.61
94 32530 3.6731924021737 1 VISp Pyramidal Cell Unknown 0.30740854595758 191.50090802767 0.63
95 17595 1.9863775929382 1 VISp Wide Interneuron Unknown 0.28417163967036 181.29364961252 0.65
96 21226 2.3969988661741 1 VISp Pyramidal Cell Unknown 1.4604730048054 146.88127473952 0.71
97 31148 3.517533688053 1 VISp Narrow Interneuron Unknown 10.401951971234 103.83722391856 0.17
98 24146 2.7268447937618 1 VISp Pyramidal Cell Unknown 2.3606394433861 147.71909904997 0.62
99 47421 5.3534015806144 1 VISp Pyramidal Cell Unknown 0.65371881655806 266.75223331454 0.65
100 12068 1.362708286286 1 VISp Pyramidal Cell Unknown 3.8117335101094 210.98746633428 0.6
101 47643 5.378956537076 1 VISp Wide Interneuron Unknown 3.4632579812354 130.13218105769 0.75
102 14685 1.6581298666281 1 VISp Pyramidal Cell Unknown 0.81716036772217 148.78217379077 0.63
103 19524 2.2041653916568 1 VISp Narrow Interneuron Unknown 0.20487604998976 140.33296890035 0.37
104 4135 0.46719555613982 1 VISp Pyramidal Cell Unknown 0.24183796856106 199.18005929934 0.69
105 30208 3.4105831508397 1 VISp Pyramidal Cell Unknown 0.099311440677966 265.62420572248 0.71
106 10389 1.1733450828218 1 VISp Pyramidal Cell Unknown 0.19251131003946 313.29546298713 0.63
107 17255 1.948580830964 1 VISp Pyramidal Cell Unknown 0.057954216169226 347.01922877518 0.7
108 39579 4.4683322237014 1 VISp Pyramidal Cell Unknown 0.83377548700068 124.03351947192 0.63
109 28138 3.1774472029171 1 VISp Pyramidal Cell Unknown 0.46200867154737 316.60629686697 0.68
110 33412 3.7722469227573 1 VISp Pyramidal Cell Unknown 5.2376391715551 96.803598400988 0.62
111 16388 1.8527357698972 1 VISp Pyramidal Cell Unknown 2.5018306077618 138.6062923 0.72
112 50400 5.689794439242 1 VISp Narrow Interneuron Unknown 3.75 91.158759749623 0.27
113 5150 0.58245159962924 1 VISp Pyramidal Cell Unknown 0.38834951456311 388.24809884385 0.62
114 11422 1.2902409134626 1 VISp Pyramidal Cell Unknown 0.78795307301698 166.36316936186 0.72
115 13591 1.5346070805456 1 VISp Pyramidal Cell Unknown 0.147156206313 344.71069087717 0.71