Details for YMV04_170907
Date & time: 2017-09-07,
Location: Alexandria
Animal subject: YMV04
Investigator: Yuta Senzai
Experimenters: Yuta Senzai
Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse
Data repositories: NYUshare_Datasets, download session from Web share
Created: 2019-01-08 13:37:14 by Yuta Senzai
Updated: 2020-06-27 18:41:49 by Peter Petersen ADMINNotes:
Epochs
| Epochs | Behavioral paradigm | Maze type | Built maze | Manipulation | Duration | Notes |
|---|---|---|---|---|---|---|
| YMV04_170907 | Homecage_Sleep | Homecage | Homecage_Mouse | 10064.232 |
Extracellular
Equipment |
File format |
Sampling rate |
nSamples |
nChannels |
Spike groups |
Least significant bit |
|---|---|---|---|---|---|---|
| Intan Technologies, RHD2000 USB interface board (256ch) | dat | 20000 | 201284640 | 64 | 1 | 0.195 |
Implanted probes
YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,
Spike groups
Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.
Group |
Channels |
Label |
|---|---|---|
| 1 | 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38 |
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.
Equipment |
Input type |
Channel |
Tag |
Description |
|---|---|---|---|---|
| Intan Technologies, RHD2000 USB interface board (256ch) | adc | 7 | Stim | opto and light stim |
Equipment |
File names |
Epoch |
Type |
Framerate |
Notes |
|---|
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.
Brain region |
Channels |
Spike groups |
|---|---|---|
| VISp – Primary visual area (View in Atlas) | 1:64 | 1 |
Channel tags
Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.
Tag |
Channels |
Spike groups |
|---|
Analysis tags
Tag |
Value |
Description |
|---|
Spike sorting
Method |
Format |
Relative path |
Channels |
Spike sorter |
Notes |
Sorting completed |
Units count |
Sorting ID |
|---|---|---|---|---|---|---|---|---|
| KiloSort | Phy | Yuta Senzai | Yes | 63 | 22778 |
Spike sorted units
| # | Spike count | Firing rate (Hz) | Spike group | Brain region | Cell type | Deep/Superficial | Refractory violation (‰) | Peak voltage (µV) | Trough-to-Peak (ms) | Isolation distance | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 56233 | 5.5874600199465 | 1 | VISp | Wide Interneuron | Unknown | 0.80024185087049 | 58.11798547552 | 0.43 | ||
| 2 | 167163 | 16.609732454862 | 1 | VISp | Narrow Interneuron | Unknown | 5.3540556223566 | 103.78679810033 | 0.15 | ||
| 3 | 5123 | 0.51002724210509 | 1 | VISp | Wide Interneuron | Unknown | 0 | 46.159297559151 | 0.7 | ||
| 4 | 90514 | 8.9937833505659 | 1 | VISp | Wide Interneuron | Unknown | 0.15467220540469 | 274.27244272542 | 0.59 | ||
| 5 | 76203 | 7.5718564737778 | 1 | VISp | Pyramidal Cell | Unknown | 0.052491371730772 | 289.15454978984 | 0.63 | ||
| 6 | 248591 | 24.700766604022 | 1 | VISp | Narrow Interneuron | Unknown | 1.1545068003266 | 137.1248641159 | 0.26 | ||
| 7 | 134010 | 13.315509171493 | 1 | VISp | Wide Interneuron | Unknown | 0.55965972688605 | 289.92436211124 | 0.53 | ||
| 8 | 15627 | 1.553849768948 | 1 | VISp | Pyramidal Cell | Unknown | 1.151852562872 | 124.89923101698 | 0.63 | ||
| 9 | 20199 | 2.0070749017668 | 1 | VISp | Wide Interneuron | Unknown | 0.94064062577355 | 106.41441785916 | 0.71 | ||
| 10 | 82527 | 8.2002500526284 | 1 | VISp | Pyramidal Cell | Unknown | 4.2652707598725 | 172.30223401507 | 0.67 | ||
| 11 | 23112 | 2.2966256138545 | 1 | VISp | Wide Interneuron | Unknown | 0.51921079958463 | 100.58256880848 | 0.54 | ||
| 12 | 28014 | 2.7838874133682 | 1 | VISp | Wide Interneuron | Unknown | 0.99950024987506 | 121.59066862391 | 0.68 | ||
| 13 | 32098 | 3.1893992310764 | 1 | VISp | Wide Interneuron | Unknown | 1.1215652065549 | 60.449439954453 | 0.71 | ||
| 14 | 13380 | 1.3298148962267 | 1 | VISp | Wide Interneuron | Unknown | 0.14947683109118 | 101.98127239785 | 0.74 | ||
| 15 | 28721 | 2.8539214620806 | 1 | VISp | Wide Interneuron | Unknown | 1.3578914383204 | 177.90600373157 | 0.64 | ||
| 16 | 20897 | 2.0764928823206 | 1 | VISp | Wide Interneuron | Unknown | 0.86136766042973 | 201.95053495084 | 0.66 | ||
| 17 | 32394 | 3.2197760285667 | 1 | VISp | Wide Interneuron | Unknown | 0.37043897017966 | 151.00212209584 | 0.68 | ||
| 18 | 14518 | 1.4427831893935 | 1 | VISp | Pyramidal Cell | Unknown | 0.82656013224962 | 78.455950767528 | 0.63 | ||
| 19 | 36189 | 3.5961887017964 | 1 | VISp | Wide Interneuron | Unknown | 0.9947774185526 | 94.765888669356 | 0.66 | ||
| 20 | 30303 | 3.0111805093558 | 1 | VISp | Wide Interneuron | Unknown | 0.3960003960004 | 131.81247203749 | 0.68 | ||
| 21 | 16574 | 1.6489255532348 | 1 | VISp | Wide Interneuron | Unknown | 1.5687220948474 | 162.01065001278 | 0.64 | ||
| 22 | 32158 | 3.2038379264492 | 1 | VISp | Wide Interneuron | Unknown | 6.1570993220971 | 90.114457789468 | 0.67 | ||
| 23 | 11260 | 1.1190596313336 | 1 | VISp | Wide Interneuron | Unknown | 1.9538188277087 | 86.011022988286 | 0.68 | ||
| 24 | 12889 | 1.280991523417 | 1 | VISp | Pyramidal Cell | Unknown | 1.0086119947242 | 92.678404498458 | 0.7 | ||
| 25 | 22690 | 2.2550850988762 | 1 | VISp | Narrow Interneuron | Unknown | 1.8510356985456 | 62.612386328169 | 0.17 | ||
| 26 | 13529 | 1.3443164854676 | 1 | VISp | Wide Interneuron | Unknown | 1.0348141030379 | 93.139694425255 | 0.51 | ||
| 27 | 17900 | 1.7834403458982 | 1 | VISp | Pyramidal Cell | Unknown | 3.1284916201117 | 148.9845156758 | 0.56 | ||
| 28 | 9534 | 0.95054426560468 | 1 | VISp | Pyramidal Cell | Unknown | 2.9368575624082 | 92.510700902014 | 0.49 | ||
| 29 | 4153 | 0.41292732577998 | 1 | VISp | Pyramidal Cell | Unknown | 0.24078979051288 | 147.2360781637 | 0.51 | ||
| 30 | 13140 | 1.3059188371145 | 1 | VISp | Wide Interneuron | Unknown | 0.68493150684932 | 60.801363147127 | 0.59 | ||
| 31 | 23347 | 2.3198795999678 | 1 | VISp | Pyramidal Cell | Unknown | 3.3409003298068 | 89.512135948208 | 0.59 | ||
| 32 | 13099 | 1.3053478408942 | 1 | VISp | Wide Interneuron | Unknown | 0.6870753492633 | 52.118519031631 | 0.62 | ||
| 33 | 9147 | 0.90977214638732 | 1 | VISp | Wide Interneuron | Unknown | 1.6398819285011 | 45.922905885946 | 0.67 | ||
| 34 | 78092 | 7.7593859063889 | 1 | VISp | Wide Interneuron | Unknown | 2.5610818009527 | 122.9579462506 | 0.5 | ||
| 35 | 16595 | 1.6498602542516 | 1 | VISp | Pyramidal Cell | Unknown | 3.1937330521241 | 75.356079477342 | 0.58 | ||
| 36 | 70613 | 7.0167188557469 | 1 | VISp | Wide Interneuron | Unknown | 3.8661436279439 | 104.29525255353 | 0.68 | ||
| 37 | 177208 | 17.607858354354 | 1 | VISp | Narrow Interneuron | Unknown | 21.669450589138 | 190.12130400589 | 0.38 | ||
| 38 | 11840 | 1.1778738486662 | 1 | VISp | Wide Interneuron | Unknown | 1.8581081081081 | 63.711155687283 | 0.66 | ||
| 39 | 16114 | 1.6011364511605 | 1 | VISp | Wide Interneuron | Unknown | 1.3652724339084 | 44.039865826268 | 0.45 | ||
| 40 | 19703 | 1.9580243620645 | 1 | VISp | Wide Interneuron | Unknown | 1.3703496929402 | 67.791675183687 | 0.61 | ||
| 41 | 73130 | 7.2694140833859 | 1 | VISp | Narrow Interneuron | Unknown | 7.0422535211268 | 83.679406194567 | 0.19 | ||
| 42 | 38119 | 3.7882149248841 | 1 | VISp | Narrow Interneuron | Unknown | 1.3116818384533 | 73.914514409231 | 0.26 | ||
| 43 | 22479 | 2.2362478182992 | 1 | VISp | Pyramidal Cell | Unknown | 0 | 238.64161229862 | 0.59 | ||
| 44 | 16802 | 1.6712885474057 | 1 | VISp | Pyramidal Cell | Unknown | 0.238066896798 | 180.28454560578 | 0.56 | ||
| 45 | 23622 | 2.3471936516192 | 1 | VISp | Pyramidal Cell | Unknown | 0.042333418000169 | 182.95541085791 | 0.72 | ||
| 46 | 11438 | 1.1376876253335 | 1 | VISp | Wide Interneuron | Unknown | 0.17485574401119 | 134.44450243193 | 0.54 | ||
| 47 | 61741 | 6.1363221621513 | 1 | VISp | Wide Interneuron | Unknown | 0.24295038953046 | 229.06219486551 | 0.58 | ||
| 48 | 11552 | 1.1639922210618 | 1 | VISp | Wide Interneuron | Unknown | 0 | 162.22840092183 | 0.51 | ||
| 49 | 41736 | 4.1492367192935 | 1 | VISp | Narrow Interneuron | Unknown | 0.76672417097949 | 55.834027670783 | 0.29 | ||
| 50 | 16197 | 1.6124566993853 | 1 | VISp | Pyramidal Cell | Unknown | 0.30869914181639 | 195.69440099443 | 0.67 | ||
| 51 | 39581 | 3.9333351906395 | 1 | VISp | Pyramidal Cell | Unknown | 1.5411434779313 | 99.161015143395 | 0.58 | ||
| 52 | 71969 | 7.1510080127726 | 1 | VISp | Wide Interneuron | Unknown | 0.75032305576012 | 114.20239520199 | 0.63 | ||
| 53 | 67565 | 6.7134122127058 | 1 | VISp | Wide Interneuron | Unknown | 0.39961518537704 | 133.76530746869 | 0.59 | ||
| 54 | 4079 | 0.40648333444488 | 1 | VISp | Wide Interneuron | Unknown | 0.24515812699191 | 164.41962107617 | 0.73 | ||
| 55 | 786 | 0.0809067289164 | 1 | VISp | Wide Interneuron | Unknown | 0 | 318.811152202 | 0.71 | ||
| 56 | 3305 | 0.32876664526003 | 1 | VISp | Narrow Interneuron | Unknown | 0 | 303.05540077465 | 0.23 | ||
| 57 | 25112 | 2.497138339326 | 1 | VISp | Narrow Interneuron | Unknown | 5.057343102899 | 97.832385235888 | 0.36 | ||
| 58 | 11471 | 1.139869301777 | 1 | VISp | Wide Interneuron | Unknown | 0 | 102.72027086389 | 0.69 | ||
| 59 | 39144 | 3.8895731270005 | 1 | VISp | Pyramidal Cell | Unknown | 0.25546699366442 | 103.18924012426 | 0.57 | ||
| 60 | 43323 | 4.305795974286 | 1 | VISp | Pyramidal Cell | Unknown | 0.32315398287284 | 133.54428174433 | 0.64 | ||
| 61 | 144732 | 14.380924081584 | 1 | VISp | Narrow Interneuron | Unknown | 0.50438051018434 | 302.52608603059 | 0.22 | ||
| 62 | 86609 | 8.6141232005608 | 1 | VISp | Narrow Interneuron | Unknown | 0.24246902746828 | 254.07986602126 | 0.34 | ||
| 63 | 170986 | 16.989546395277 | 1 | VISp | Wide Interneuron | Unknown | 1.0995052226498 | 148.02815522839 | 0.55 |