Details for YMV05_170912

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  • Date & time: 2017-09-12,

  • Location: Alexandria

  • Animal subject: YMV05

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:38:05 by Yuta Senzai
    Updated: 2020-06-27 18:41:52 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV05_170912 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 13513.896

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 270277920 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 72 22788

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 175828 13.302223092084 1 VISp Pyramidal Cell Unknown 2.2408262620288 138.87267405652 0.67
2 208025 15.738155167664 1 VISp Narrow Interneuron Unknown 30.400192284581 128.85400382023 0.24
3 213942 16.185757314322 1 VISp Wide Interneuron Unknown 0.30849482570042 370.89074257033 0.5
4 144643 10.943073363399 1 VISp Wide Interneuron Unknown 2.4474049902173 222.47052528449 0.49
5 63999 4.8421835651974 1 VISp Pyramidal Cell Unknown 7.000109376709 175.32246738385 0.58
6 54805 4.1465802852393 1 VISp Pyramidal Cell Unknown 2.4085393668461 191.63261149954 0.59
7 426123 32.238298327944 1 VISp Narrow Interneuron Unknown 1.6943464680386 322.85637339409 0.24
8 37349 2.8258660541004 1 VISp Pyramidal Cell Unknown 2.1687327639294 331.56952117155 0.67
9 12295 0.93053720287359 1 VISp Pyramidal Cell Unknown 3.4160227734852 158.66131528513 0.69
10 157717 11.932213584649 1 VISp Narrow Interneuron Unknown 7.3612863546732 177.83565599997 0.25
11 36013 2.724791712947 1 VISp Pyramidal Cell Unknown 2.832310554522 307.96576591921 0.65
12 6940 0.52529883268495 1 VISp Wide Interneuron Unknown 0 355.10594615932 0.69
13 38875 2.9411696058194 1 VISp Pyramidal Cell Unknown 2.6752411575563 115.23431759229 0.69
14 7340 0.55560640624178 1 VISp Pyramidal Cell Unknown 0 323.61925302743 0.66
15 111717 8.4520022174921 1 VISp Wide Interneuron Unknown 3.4014518828826 152.76755979289 0.59
16 23536 1.7843081582976 1 VISp Pyramidal Cell Unknown 0.21244051665534 247.07693409659 0.57
17 60570 4.5826374308622 1 VISp Pyramidal Cell Unknown 11.953112101701 103.83080745005 0.56
18 22659 1.7151295667264 1 VISp Pyramidal Cell Unknown 3.4423407917384 234.08557128254 0.64
19 122231 9.2478293077277 1 VISp Narrow Interneuron Unknown 4.1724276165621 138.53261091286 0.2
20 24021 1.8173309847666 1 VISp Pyramidal Cell Unknown 3.5385704175513 155.22309059936 0.61
21 133275 10.083135804621 1 VISp Wide Interneuron Unknown 0.1500656537235 251.36423878369 0.59
22 37027 2.8022105079458 1 VISp Narrow Interneuron Unknown 8.2372322899506 174.75556392714 0.22
23 34194 2.5875232540542 1 VISp Pyramidal Cell Unknown 1.6084693221033 153.27132815088 0.53
24 22564 1.7075443842351 1 VISp Pyramidal Cell Unknown 2.3931926963304 154.93390352734 0.7
25 23515 1.7794936457074 1 VISp Pyramidal Cell Unknown 3.5296619179247 119.64241352097 0.7
26 7378 0.55975467450252 1 VISp Pyramidal Cell Unknown 7.5901328273245 660.21997115731 0.6
27 116800 8.8367576677182 1 VISp Narrow Interneuron Unknown 2.8424657534247 179.13064338848 0.24
28 8163 0.62041869757265 1 VISp Pyramidal Cell Unknown 0.12250398137939 276.27855758835 0.58
29 31349 2.3720512301474 1 VISp Pyramidal Cell Unknown 3.1579954703499 180.28923899963 0.58
30 51988 3.9333713614211 1 VISp Wide Interneuron Unknown 3.0006924674925 226.68628655624 0.59
31 22547 1.7058606956191 1 VISp Pyramidal Cell Unknown 1.1974985585665 146.87017624147 0.69
32 108090 8.1775665095598 1 VISp Pyramidal Cell Unknown 3.0437598297715 160.86618861087 0.71
33 40126 3.0359033973814 1 VISp Pyramidal Cell Unknown 2.2180132582366 70.54353951338 0.62
34 31170 2.3586300734506 1 VISp Pyramidal Cell Unknown 5.7106191851139 151.61961701223 0.53
35 60054 4.5434548156846 1 VISp Wide Interneuron Unknown 9.8910980117894 120.18871055536 0.59
36 113668 8.599903280973 1 VISp Wide Interneuron Unknown 0.4926628426646 167.6621319651 0.59
37 28963 2.192061838925 1 VISp Pyramidal Cell Unknown 2.6930911853054 229.12053730272 0.65
38 18350 1.3897547980631 1 VISp Pyramidal Cell Unknown 0.38147138964578 272.74564979083 0.65
39 35048 2.6520780981912 1 VISp Pyramidal Cell Unknown 6.2485733850719 120.70298569325 0.57
40 122611 9.2764336719691 1 VISp Wide Interneuron Unknown 2.9524267806314 193.54703228943 0.54
41 9579 0.72499803244283 1 VISp Pyramidal Cell Unknown 0.52197515398267 335.38101350666 0.64
42 12018 0.90940171661946 1 VISp Pyramidal Cell Unknown 1.0817107671826 200.81106799312 0.64
43 8394 0.63560952380682 1 VISp Pyramidal Cell Unknown 1.072194424589 188.8462042193 0.68
44 28163 2.1314080050782 1 VISp Wide Interneuron Unknown 4.4029400276959 115.44757602965 0.63
45 57806 4.3740919309937 1 VISp Pyramidal Cell Unknown 13.251219596582 101.50351806751 0.66
46 34199 2.5874699752024 1 VISp Pyramidal Cell Unknown 2.3392496856633 106.71223059835 0.58
47 32876 2.4888580714755 1 VISp Pyramidal Cell Unknown 2.7071419880764 143.96617148662 0.68
48 49960 3.7799749087899 1 VISp Pyramidal Cell Unknown 9.2874299439552 131.43872064329 0.68
49 110020 8.3239068039446 1 VISp Wide Interneuron Unknown 0.49081985093619 132.30193185217 0.54
50 91615 6.931456684908 1 VISp Wide Interneuron Unknown 9.7363968782405 94.850195686732 0.61
51 17802 1.3468727918709 1 VISp Wide Interneuron Unknown 2.4716324008538 97.834268997541 0.61
52 5119 0.38744390649148 1 VISp Pyramidal Cell Unknown 0.58605196327408 128.09641178497 0.61
53 12545 0.94927774435505 1 VISp Pyramidal Cell Unknown 3.0290952570745 94.827022663244 0.57
54 39952 3.0239839461815 1 VISp Wide Interneuron Unknown 6.9833800560673 116.68003319609 0.58
55 21726 1.6437488686743 1 VISp Pyramidal Cell Unknown 1.0586394182086 161.85847308461 0.59
56 138941 10.511705998642 1 VISp Narrow Interneuron Unknown 6.8158426958205 119.42006122762 0.26
57 23342 1.7662417284695 1 VISp Pyramidal Cell Unknown 6.25481963842 165.30572385856 0.66
58 26128 1.9768722291973 1 VISp Wide Interneuron Unknown 4.7075933864054 100.34022428597 0.72
59 26848 2.0320844625977 1 VISp Pyramidal Cell Unknown 1.4153754469607 119.48767994531 0.61
60 28501 2.1575304005144 1 VISp Wide Interneuron Unknown 1.3332865513491 84.717728768445 0.47
61 29386 2.2236987351781 1 VISp Pyramidal Cell Unknown 1.1229837337508 208.19473024131 0.63
62 42359 3.2048332689823 1 VISp Pyramidal Cell Unknown 0.21246960504261 112.94596079029 0.75
63 85670 6.4813547455243 1 VISp Wide Interneuron Unknown 0.51359869265787 217.89202816092 0.65
64 7975 0.60375073500974 1 VISp Pyramidal Cell Unknown 4.2633228840125 476.67678284622 0.57
65 55799 4.2214583128703 1 VISp Pyramidal Cell Unknown 0.32258642628004 319.07860571905 0.52
66 30788 2.3293376758922 1 VISp Pyramidal Cell Unknown 0.16240093542939 330.65048240452 0.7
67 23259 1.7597575897036 1 VISp Pyramidal Cell Unknown 1.97772905112 182.36469326446 0.59
68 40368 3.0540563202394 1 VISp Wide Interneuron Unknown 0.37158145065398 233.76700635036 0.66
69 162482 12.29313325098 1 VISp Narrow Interneuron Unknown 1.6186408340616 120.99410000737 0.37
70 25316 1.9154924977988 1 VISp Pyramidal Cell Unknown 0.15800284405119 705.16373070651 0.67
71 70306 5.3196480181109 1 VISp Wide Interneuron Unknown 3.8972491679231 119.41700308954 0.6
72 43534 3.2942459506471 1 VISp Pyramidal Cell Unknown 5.696696834658 198.77771162574 0.52