Details for YMV06_170913

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  • Date & time: 2017-09-13,

  • Location: Alexandria

  • Animal subject: YMV06

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:38:35 by Yuta Senzai
    Updated: 2020-06-27 18:41:54 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV06_170913 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 14279.436

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 285588720 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 73 22798

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 5553 0.38943384282555 1 VISp Pyramidal Cell Unknown 0 165.88044898909 0.66
2 98319 6.892838573547 1 VISp Narrow Interneuron Unknown 6.4178846408121 90.785941499174 0.24
3 5923 0.41527814245687 1 VISp Wide Interneuron Unknown 1.1818335303056 93.614855998895 0.71
4 20484 1.4360733262798 1 VISp Pyramidal Cell Unknown 2.929115407147 101.50222735176 0.58
5 182601 12.801197209639 1 VISp Narrow Interneuron Unknown 2.0153230267085 140.93943413604 0.29
6 123880 8.6845780902025 1 VISp Wide Interneuron Unknown 0.96867936712948 183.30175839224 0.56
7 82900 5.8116333469685 1 VISp Wide Interneuron Unknown 0.012062726176116 524.57342895524 0.58
8 343601 24.087877086959 1 VISp Narrow Interneuron Unknown 8.3701735443145 114.72891064644 0.29
9 178505 12.514231998838 1 VISp Narrow Interneuron Unknown 6.240721548416 122.312765398 0.22
10 161653 11.332610838177 1 VISp Narrow Interneuron Unknown 4.2312855313542 86.074268079784 0.31
11 133290 9.3442804873003 1 VISp Wide Interneuron Unknown 0.70522919948983 195.38810671231 0.6
12 76399 5.3559747276006 1 VISp Narrow Interneuron Unknown 2.1204466027042 91.562780475516 0.22
13 254769 17.860385678726 1 VISp Narrow Interneuron Unknown 10.456531210626 92.623906902625 0.3
14 30196 2.1169606825767 1 VISp Wide Interneuron Unknown 1.5233805802093 66.056576716075 0.65
15 6574 0.46118051752795 1 VISp Narrow Interneuron Unknown 0.1521143900213 119.17701378706 0.35
16 33009 2.3142240338949 1 VISp Narrow Interneuron Unknown 0.21206337665485 92.483717761121 0.41
17 32932 2.3087011065792 1 VISp Pyramidal Cell Unknown 5.7694643507834 68.498056428375 0.65
18 30120 2.1116680713548 1 VISp Wide Interneuron Unknown 1.062416998672 129.10226733256 0.69
19 14767 1.0355815897072 1 VISp Pyramidal Cell Unknown 0.94805986320851 148.86070656663 0.69
20 57883 4.0579171754939 1 VISp Narrow Interneuron Unknown 3.8180467494774 82.108377933372 0.29
21 40394 2.8318089441866 1 VISp Pyramidal Cell Unknown 5.2730603554983 79.647656998134 0.61
22 77078 5.4036729019482 1 VISp Narrow Interneuron Unknown 1.2065699680843 92.245381131622 0.29
23 28578 2.0035725469463 1 VISp Pyramidal Cell Unknown 4.6889215480439 100.55672348328 0.62
24 36091 2.5303079410214 1 VISp Wide Interneuron Unknown 0.58186251420022 122.88145031784 0.43
25 42446 2.9768166952078 1 VISp Narrow Interneuron Unknown 5.7013617301984 81.697971174544 0.23
26 33226 2.3292966394498 1 VISp Wide Interneuron Unknown 2.4077529645458 96.268536984227 0.66
27 76064 5.3324547046744 1 VISp Narrow Interneuron Unknown 5.4559318468658 115.91625556352 0.29
28 6244 0.43784394464156 1 VISp Pyramidal Cell Unknown 0.32030749519539 172.25322003539 0.66
29 18014 1.2629834181825 1 VISp Wide Interneuron Unknown 2.3870323082047 64.62774526654 0.7
30 44100 3.0919172414066 1 VISp Pyramidal Cell Unknown 0.8390022675737 44.481924426421 0.56
31 21643 1.5181608509975 1 VISp Wide Interneuron Unknown 2.079194196738 89.798256111522 0.65
32 24995 1.7524175939824 1 VISp Wide Interneuron Unknown 0.96019203840768 109.69189173963 0.7
33 39794 2.7897470381766 1 VISp Pyramidal Cell Unknown 6.3326129567271 73.092881622945 0.57
34 39391 2.7615370517111 1 VISp Wide Interneuron Unknown 0.50773019217588 86.430543498795 0.52
35 16828 1.1797709247741 1 VISp Pyramidal Cell Unknown 2.1392916567625 57.208118651997 0.67
36 73353 5.1425473166776 1 VISp Wide Interneuron Unknown 2.98556296266 87.828064306023 0.58
37 79413 5.56717755094 1 VISp Narrow Interneuron Unknown 5.6539861231788 87.384143191423 0.36
38 26260 1.8409861530465 1 VISp Wide Interneuron Unknown 2.6275704493526 56.302879919802 0.65
39 25998 1.8226607780146 1 VISp Pyramidal Cell Unknown 4.4618816832064 66.800842987754 0.68
40 62733 4.3980052967665 1 VISp Wide Interneuron Unknown 0.55792007396426 142.87754356686 0.46
41 61443 4.3076892940965 1 VISp Wide Interneuron Unknown 5.7451621828361 158.66301193526 0.7
42 31835 2.2321584220643 1 VISp Wide Interneuron Unknown 2.9841369561803 101.8971591964 0.71
43 37936 2.6596306666465 1 VISp Wide Interneuron Unknown 2.0033741037537 117.79029623117 0.68
44 35996 2.5236021404515 1 VISp Pyramidal Cell Unknown 0.11112345816202 167.26040334435 0.59
45 44317 3.1069593270406 1 VISp Pyramidal Cell Unknown 0.54155290294921 211.53069463319 0.66
46 41751 2.9271229465533 1 VISp Pyramidal Cell Unknown 1.2694306723192 138.23789392638 0.65
47 20606 1.4445983307696 1 VISp Pyramidal Cell Unknown 1.5529457439581 97.90011095312 0.57
48 63447 4.4479230475312 1 VISp Pyramidal Cell Unknown 7.6126530805239 78.434295587297 0.63
49 13646 0.95719913124674 1 VISp Wide Interneuron Unknown 0.29312619082515 209.25623602099 0.66
50 23621 1.6560889863215 1 VISp Pyramidal Cell Unknown 0.084670420388637 177.39231517061 0.61
51 39962 2.8015579401872 1 VISp Pyramidal Cell Unknown 0.97592713077424 88.202607034155 0.59
52 63071 4.4215448615276 1 VISp Narrow Interneuron Unknown 2.0453140111937 88.809499199066 0.25
53 65473 4.5899912805028 1 VISp Narrow Interneuron Unknown 2.3979350266522 87.842823417604 0.37
54 55158 3.8672949902723 1 VISp Pyramidal Cell Unknown 0.63454077377715 87.012093153664 0.57
55 36002 2.5239122228028 1 VISp Pyramidal Cell Unknown 1.3888117326815 67.884291406338 0.69
56 11499 0.80618522071443 1 VISp Pyramidal Cell Unknown 1.2174971736673 121.0176840539 0.61
57 50301 3.5265825210424 1 VISp Pyramidal Cell Unknown 0.37772608894455 94.329609648278 0.7
58 42720 2.9955639253394 1 VISp Pyramidal Cell Unknown 0.46816479400749 167.74267595636 0.67
59 28326 1.9858527377042 1 VISp Pyramidal Cell Unknown 0.24712278472075 121.56379908275 0.59
60 10461 0.73349020459802 1 VISp Pyramidal Cell Unknown 1.8162699550712 97.69495767766 0.66
61 19711 1.3821184085263 1 VISp Pyramidal Cell Unknown 0.30439855918015 205.13814395728 0.69
62 43550 3.0531522896518 1 VISp Pyramidal Cell Unknown 0.75774971297359 151.57421714376 0.62
63 17894 1.2548883288067 1 VISp Pyramidal Cell Unknown 0.95003911925785 122.43386317091 0.58
64 37033 2.5967904320982 1 VISp Pyramidal Cell Unknown 1.674182485891 133.32543425623 0.68
65 27977 1.9617039722374 1 VISp Wide Interneuron Unknown 0.42892375880187 116.80703738027 0.62
66 33565 2.3531215643807 1 VISp Narrow Interneuron Unknown 0.20855057351408 143.330031601 0.42
67 40477 2.8384436345889 1 VISp Pyramidal Cell Unknown 0.32117004718729 123.73882426205 0.61
68 21838 1.5311949291884 1 VISp Pyramidal Cell Unknown 2.4727539151937 102.11300031055 0.56
69 22068 1.5475553546536 1 VISp Wide Interneuron Unknown 0.58908827261193 135.14920472748 0.69
70 73711 5.1674650453091 1 VISp Wide Interneuron Unknown 1.1260191830256 54.787899490917 0.58
71 45879 3.216509404229 1 VISp Wide Interneuron Unknown 4.6426469626627 70.996087908732 0.63
72 9355 0.65606597991391 1 VISp Pyramidal Cell Unknown 0.32068412613576 125.0726334418 0.69
73 13015 0.91269718019629 1 VISp Pyramidal Cell Unknown 0 287.06839704982 0.64