Details for YMV07_170914

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  • Date & time: 2017-09-14,

  • Location: Alexandria

  • Animal subject: YMV07

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:39:05 by Yuta Senzai
    Updated: 2020-06-27 18:41:57 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV07_170914 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 32488.02

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 649760400 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 101 22808

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 434707 13.727518213415 1 VISp Narrow Interneuron Unknown 6.9541093196107 95.98374157832 0.2
2 33796 1.0678077022089 1 VISp Pyramidal Cell Unknown 1.5682329269736 103.16177392685 0.65
3 119840 3.7849929212357 1 VISp Wide Interneuron Unknown 1.9025367156208 126.3045278269 0.62
4 71357 2.2535768493708 1 VISp Pyramidal Cell Unknown 1.9759799318918 200.69860710109 0.68
5 51189 1.6169307371093 1 VISp Pyramidal Cell Unknown 0.25396081189318 104.18375575673 0.52
6 181031 5.7168164633729 1 VISp Pyramidal Cell Unknown 2.7232904861598 83.713011810638 0.68
7 50021 1.5796284526046 1 VISp Pyramidal Cell Unknown 4.8779512604706 126.6807454509 0.56
8 102220 3.2280620365564 1 VISp Narrow Interneuron Unknown 1.8783017022109 157.49253729758 0.33
9 134691 4.2534014260088 1 VISp Wide Interneuron Unknown 5.1005635120387 82.014940120379 0.68
10 51428 1.6241827278586 1 VISp Pyramidal Cell Unknown 4.3361592906588 100.91180848772 0.63
11 14846 0.46926773772386 1 VISp Pyramidal Cell Unknown 1.5492388522161 109.37975271469 0.66
12 151699 4.7906809253956 1 VISp Pyramidal Cell Unknown 6.1305611770677 91.811569275062 0.67
13 78673 2.4850404382898 1 VISp Pyramidal Cell Unknown 0.87704803426843 90.617623106086 0.61
14 217408 6.8654881829843 1 VISp Narrow Interneuron Unknown 7.0098616426258 133.64178925515 0.34
15 22521 0.71131917936716 1 VISp Pyramidal Cell Unknown 2.7529861018605 130.49016112636 0.62
16 8005 0.25280946439302 1 VISp Pyramidal Cell Unknown 0 178.64701283 0.68
17 28358 1.2029335671708 1 VISp Pyramidal Cell Unknown 2.7505465829748 90.788254376255 0.67
18 23626 0.74621041316607 1 VISp Pyramidal Cell Unknown 1.5237450266655 138.88375430977 0.56
19 174226 5.5024434158899 1 VISp Pyramidal Cell Unknown 3.5069392627966 62.915954732512 0.49
20 21597 0.68915018644716 1 VISp Pyramidal Cell Unknown 1.2964763624577 102.60759455658 0.66
21 75629 2.3889797707881 1 VISp Pyramidal Cell Unknown 0.14544685239789 112.82925950299 0.74
22 106312 3.3579503588006 1 VISp Pyramidal Cell Unknown 0.95944013846038 160.41149820445 0.59
23 574883 18.154186795218 1 VISp Narrow Interneuron Unknown 9.6784911016676 171.06044842086 0.23
24 31797 1.0049045390464 1 VISp Pyramidal Cell Unknown 0 238.48606186185 0.7
25 426857 13.479639832141 1 VISp Narrow Interneuron Unknown 3.9615140433447 117.3649214751 0.34
26 603547 19.059316151937 1 VISp Narrow Interneuron Unknown 2.0412660488744 123.95564069892 0.24
27 666429 21.04503637595 1 VISp Narrow Interneuron Unknown 2.0737392880562 312.0838304595 0.25
28 6926 0.21881934895528 1 VISp Pyramidal Cell Unknown 0 306.78740869602 0.74
29 33927 1.0715619380006 1 VISp Pyramidal Cell Unknown 0.14737524685354 152.88815733892 0.71
30 8534 0.26957203534632 1 VISp Pyramidal Cell Unknown 0 200.55715431387 0.71
31 72025 2.2746850802727 1 VISp Pyramidal Cell Unknown 7.6640055536272 94.803576445869 0.68
32 76809 2.425560264742 1 VISp Wide Interneuron Unknown 0.20830892213152 155.14139618324 0.72
33 55044 1.7383015007529 1 VISp Pyramidal Cell Unknown 0.45418210885837 64.832172502248 0.55
34 28097 0.88762919278309 1 VISp Pyramidal Cell Unknown 0.24913691853223 143.73106806904 0.7
35 264824 8.3693243555856 1 VISp Narrow Interneuron Unknown 5.2487689937468 111.05891484515 0.23
36 133793 5.6195217598521 1 VISp Pyramidal Cell Unknown 0.46340242015651 56.826263862331 0.59
37 77674 2.4529227148582 1 VISp Wide Interneuron Unknown 2.8323505935062 121.88765581957 0.65
38 66245 2.0922044397829 1 VISp Pyramidal Cell Unknown 5.6608045890256 188.15484535094 0.62
39 78193 2.4695584902973 1 VISp Pyramidal Cell Unknown 8.3767089125625 137.65730085254 0.66
40 220343 6.9584287418644 1 VISp Narrow Interneuron Unknown 7.0844093073072 98.229957965205 0.25
41 133928 4.2293168982313 1 VISp Pyramidal Cell Unknown 6.4138940326145 106.92282031072 0.6
42 98402 3.1074789091222 1 VISp Pyramidal Cell Unknown 9.0140444299913 87.511738515415 0.57
43 175112 5.529900220736 1 VISp Narrow Interneuron Unknown 8.0120151674357 122.49015079686 0.23
44 33419 1.0554191453567 1 VISp Wide Interneuron Unknown 0.35907717166881 112.66423891504 0.72
45 79828 3.1465983737461 1 VISp Pyramidal Cell Unknown 1.3654356867265 70.114475174292 0.74
46 123611 3.9035024362003 1 VISp Wide Interneuron Unknown 4.2876443035005 201.22636089271 0.61
47 147746 4.6656679782664 1 VISp Wide Interneuron Unknown 1.8409973874081 224.94910993381 0.61
48 60425 1.908496841767 1 VISp Pyramidal Cell Unknown 3.9222176251552 95.502734503018 0.59
49 69968 2.2095266649965 1 VISp Pyramidal Cell Unknown 9.9474045277841 71.557418264574 0.62
50 10834 0.34233149811863 1 VISp Pyramidal Cell Unknown 1.0153221340225 125.49313383951 0.67
51 71962 2.2728810065037 1 VISp Pyramidal Cell Unknown 1.8204052138629 122.53216046583 0.61
52 75804 2.3941368396066 1 VISp Pyramidal Cell Unknown 1.3455754313757 108.23066689758 0.58
53 18168 0.57832560632166 1 VISp Pyramidal Cell Unknown 3.3025099075297 98.411970887901 0.67
54 93885 2.9648442421596 1 VISp Pyramidal Cell Unknown 9.0642807690259 72.683327041931 0.61
55 11023 0.34812827716936 1 VISp Narrow Interneuron Unknown 0.36287761952282 132.49621557617 0.25
56 73021 2.3059709193354 1 VISp Pyramidal Cell Unknown 4.4370797441832 89.618716657309 0.71
57 61190 1.932348626179 1 VISp Wide Interneuron Unknown 0.91518221931688 178.71426096921 0.61
58 223339 7.0527844607092 1 VISp Wide Interneuron Unknown 2.7805264642539 151.39483010425 0.58
59 49761 1.5714489804106 1 VISp Pyramidal Cell Unknown 0.84403448483752 176.28501758766 0.61
60 78469 2.4779748233571 1 VISp Pyramidal Cell Unknown 1.9370706903363 114.95933298653 0.59
61 86179 2.7215882001177 1 VISp Pyramidal Cell Unknown 0.90509288805858 273.66326395712 0.69
62 335657 10.599689236161 1 VISp Narrow Interneuron Unknown 0.16683697941649 100.09236631865 0.32
63 38099 1.2034855112422 1 VISp Pyramidal Cell Unknown 3.9633586183364 125.47624463668 0.51
64 241482 7.6257608941127 1 VISp Pyramidal Cell Unknown 5.4496815497635 157.85044142431 0.59
65 156121 4.930117609457 1 VISp Narrow Interneuron Unknown 3.2923181378546 99.40660650246 0.26
66 144821 4.5732933600401 1 VISp Pyramidal Cell Unknown 10.219512363538 119.49994651971 0.65
67 38349 1.2113290738513 1 VISp Pyramidal Cell Unknown 0.49544968578059 167.50478333608 0.58
68 252951 7.9887829656007 1 VISp Narrow Interneuron Unknown 2.4471142632368 202.8318487614 0.23
69 215837 6.815905320555 1 VISp Wide Interneuron Unknown 0.50964385161024 91.152196639053 0.68
70 412937 13.040109907698 1 VISp Pyramidal Cell Unknown 34.392655538254 119.23289379529 0.45
71 115012 3.6324454836295 1 VISp Wide Interneuron Unknown 1.4085486731819 157.9904300338 0.57
72 19313 0.61002455919772 1 VISp Pyramidal Cell Unknown 0 129.10656287135 0.64
73 61429 1.9401155475263 1 VISp Pyramidal Cell Unknown 4.3790392160055 87.006440446961 0.59
74 36697 1.1590656123253 1 VISp Pyramidal Cell Unknown 1.7712619560182 138.02195529678 0.67
75 21031 0.66430769784952 1 VISp Pyramidal Cell Unknown 0.047548856450002 217.02301211515 0.6
76 399124 12.60387840239 1 VISp Wide Interneuron Unknown 0.91700824806326 114.4454632111 0.56
77 130169 4.1105923240097 1 VISp Pyramidal Cell Unknown 1.359770759551 71.898182864912 0.63
78 455306 14.378012433975 1 VISp Wide Interneuron Unknown 2.4664730972137 158.50589624487 0.55
79 100501 3.1738171545119 1 VISp Pyramidal Cell Unknown 3.4129013641655 113.70731159368 0.59
80 26056 0.82318457007121 1 VISp Pyramidal Cell Unknown 5.7568314399754 153.20637714608 0.57
81 96368 3.0432755773464 1 VISp Pyramidal Cell Unknown 1.0688195251536 204.43462196412 0.69
82 268131 8.4672737246339 1 VISp Wide Interneuron Unknown 0.063401844620726 232.1959308967 0.55
83 708885 22.385892944804 1 VISp Narrow Interneuron Unknown 3.151427946705 242.79407721842 0.26
84 94246 2.9763223288805 1 VISp Pyramidal Cell Unknown 2.3661481654394 179.86160846944 0.53
85 61999 1.958063552302 1 VISp Pyramidal Cell Unknown 2.6774625397184 109.90715047375 0.54
86 20413 0.64512372794731 1 VISp Pyramidal Cell Unknown 0.14696516925489 313.87677311301 0.59
87 19088 0.60314719380847 1 VISp Pyramidal Cell Unknown 0.26194467728416 208.43590021707 0.65
88 34199 1.0803710719394 1 VISp Pyramidal Cell Unknown 0.40936869499108 172.93083119451 0.57
89 242203 7.6484912539188 1 VISp Pyramidal Cell Unknown 3.6911186071188 149.8885866397 0.55
90 374583 11.828921906535 1 VISp Wide Interneuron Unknown 0.80889949623982 141.24894341332 0.55
91 321322 10.147006317978 1 VISp Wide Interneuron Unknown 1.4440343331611 215.59068623015 0.59
92 114031 3.6009806947917 1 VISp Pyramidal Cell Unknown 0.36832089519517 260.42596737675 0.58
93 13447 0.42490541959895 1 VISp Pyramidal Cell Unknown 0 250.43809147337 0.65
94 383056 12.097282526294 1 VISp Narrow Interneuron Unknown 0.026105843532016 397.48124686656 0.22
95 85428 2.6978367254674 1 VISp Pyramidal Cell Unknown 1.6271011846233 284.09131006945 0.72
96 381525 12.048105130377 1 VISp Wide Interneuron Unknown 0.45082235764367 275.14203496444 0.58
97 63973 2.0205816868172 1 VISp Pyramidal Cell Unknown 1.1411064042643 144.78382698391 0.69
98 88265 2.7878096117974 1 VISp Pyramidal Cell Unknown 0.022659038123832 197.04942452634 0.71
99 214520 6.7743666114851 1 VISp Pyramidal Cell Unknown 0.02796942010069 429.2223116627 0.63
100 126058 3.9814618917177 1 VISp Pyramidal Cell Unknown 5.925843659268 94.909174842748 0.6
101 647918 20.460648680639 1 VISp Narrow Interneuron Unknown 0.027781293311808 305.74526078364 0.29