Details for YMV08_170922

Back to list of sessions

  • Date & time: 2017-09-22,

  • Location: Alexandria

  • Animal subject: YMV08

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:39:38 by Yuta Senzai
    Updated: 2020-06-27 18:42:01 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV08_170922 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 15047.532

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 300950640 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 100 22818

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 24076 1.6277021217499 1 VISp Pyramidal Cell Unknown 3.3643462369164 90.473229712363 0.63
2 20329 1.3745955325841 1 VISp Pyramidal Cell Unknown 2.6563038024497 103.55942098679 0.65
3 52873 3.5741883089026 1 VISp Wide Interneuron Unknown 3.6313430295236 118.12330400215 0.68
4 69713 4.7124336927227 1 VISp Pyramidal Cell Unknown 1.2623183624288 139.15160551373 0.7
5 147829 9.9927637651539 1 VISp Wide Interneuron Unknown 2.1984860886565 304.19597575342 0.55
6 261069 17.647330382215 1 VISp Narrow Interneuron Unknown 7.9404295416154 204.74666809908 0.2
7 32341 2.1865533573952 1 VISp Wide Interneuron Unknown 0.98945610834544 106.38995154421 0.59
8 239364 16.180254978603 1 VISp Narrow Interneuron Unknown 26.858675490049 236.80156732211 0.11
9 14190 0.96133100240487 1 VISp Wide Interneuron Unknown 0.3523608174771 130.71356736389 0.58
10 14442 1.0827895596579 1 VISp Narrow Interneuron Unknown 0.06924248719014 177.5160964275 0.25
11 62373 4.2163429761153 1 VISp Pyramidal Cell Unknown 4.6815128340788 108.74388829749 0.74
12 42931 2.9022415646705 1 VISp Pyramidal Cell Unknown 1.0481936130069 92.728055314422 0.58
13 82128 5.5518235294539 1 VISp Wide Interneuron Unknown 1.8751217611533 96.300507305599 0.49
14 38283 2.5892592651923 1 VISp Wide Interneuron Unknown 0.41794007784134 133.21485090206 0.58
15 48572 3.2838991197576 1 VISp Pyramidal Cell Unknown 3.4999588240138 130.84508987313 0.59
16 36220 2.4483452386881 1 VISp Wide Interneuron Unknown 1.7669795692987 155.74830677865 0.65
17 55685 3.764437540741 1 VISp Pyramidal Cell Unknown 3.6634641285804 92.223770825678 0.6
18 61613 4.1650626643929 1 VISp Narrow Interneuron Unknown 3.3434502458897 87.532930716979 0.21
19 13434 0.90869915272225 1 VISp Pyramidal Cell Unknown 1.6376358493375 116.79004700423 0.68
20 22449 1.5177979558191 1 VISp Pyramidal Cell Unknown 3.2518152256225 92.02097020138 0.69
21 19849 1.3434589305217 1 VISp Wide Interneuron Unknown 0.70532520530002 94.827363068139 0.46
22 4174 0.28242213272833 1 VISp Pyramidal Cell Unknown 0.95831336847149 71.362806777807 0.72
23 4968 0.33647008153819 1 VISp Pyramidal Cell Unknown 0.20128824476651 196.48096988311 0.69
24 8988 0.60817370642787 1 VISp Wide Interneuron Unknown 1.3351134846462 66.816603063653 0.65
25 29292 1.9805442829404 1 VISp Pyramidal Cell Unknown 4.0284036597023 96.981310678182 0.65
26 1597 0.10836691887885 1 VISp Pyramidal Cell Unknown 1.2523481527865 433.26305169039 0.71
27 32131 2.1731900514523 1 VISp Pyramidal Cell Unknown 1.2449036755781 125.58930874236 0.67
28 4301 0.29126938013068 1 VISp Pyramidal Cell Unknown 1.162520344106 94.947867104303 0.66
29 5599 0.37955901756826 1 VISp Pyramidal Cell Unknown 0.53580996606537 155.17764638424 0.66
30 17934 1.2125870798563 1 VISp Pyramidal Cell Unknown 1.39400022304 143.92637974719 0.58
31 15387 1.040471856658 1 VISp Pyramidal Cell Unknown 0.7798791187366 194.23377475197 0.53
32 288944 19.532058404332 1 VISp Narrow Interneuron Unknown 8.1365247245141 149.82834806914 0.32
33 192150 12.988637142761 1 VISp Wide Interneuron Unknown 5.4020296643247 242.29982453891 0.54
34 55998 3.7875510033939 1 VISp Narrow Interneuron Unknown 0.62502232222579 178.82004945509 0.24
35 32210 2.1776294359088 1 VISp Pyramidal Cell Unknown 4.1601986960571 121.19311802271 0.52
36 154600 10.450844214261 1 VISp Narrow Interneuron Unknown 3.777490297542 128.03531703733 0.24
37 97710 6.6053414132885 1 VISp Pyramidal Cell Unknown 0.020468734008802 160.25874547809 0.73
38 144629 9.7764500184257 1 VISp Wide Interneuron Unknown 0.18668455150765 496.99989235138 0.5
39 97040 6.5596750808526 1 VISp Pyramidal Cell Unknown 5.6677658697444 118.75064306962 0.58
40 161604 10.924081923098 1 VISp Wide Interneuron Unknown 0.15469914111037 484.45208816259 0.55
41 25256 1.7074201915255 1 VISp Narrow Interneuron Unknown 2.3360785555908 64.565484479168 0.4
42 75277 5.0885852683831 1 VISp Pyramidal Cell Unknown 11.982411626393 99.77673397603 0.47
43 20820 1.4074431372946 1 VISp Narrow Interneuron Unknown 2.8338136407301 102.25600606656 0.24
44 18912 1.2810847210955 1 VISp Narrow Interneuron Unknown 0.79314720812183 126.81176221088 0.23
45 45187 3.0546857327359 1 VISp Wide Interneuron Unknown 8.2545864961161 120.58213613113 0.63
46 23403 1.5829871100017 1 VISp Pyramidal Cell Unknown 5.7684912190745 116.67395448824 0.57
47 24298 1.6438859333679 1 VISp Wide Interneuron Unknown 2.1812494855544 81.975605631047 0.68
48 203834 13.778748267162 1 VISp Narrow Interneuron Unknown 28.086580256483 210.57078750885 0.22
49 3402 0.23060961393856 1 VISp Pyramidal Cell Unknown 0.29394473838918 92.482994078908 0.49
50 27986 1.8923899609571 1 VISp Pyramidal Cell Unknown 0.28585721432145 325.43117069476 0.53
51 64662 4.371029419711 1 VISp Pyramidal Cell Unknown 2.7527759735239 126.59609135674 0.55
52 13870 0.93811276513813 1 VISp Pyramidal Cell Unknown 0.50468637346792 266.9797087714 0.59
53 20077 1.3583065999669 1 VISp Pyramidal Cell Unknown 0.94635652736963 167.45866698647 0.54
54 21261 1.4379580597865 1 VISp Pyramidal Cell Unknown 0.65848266779549 176.37011279966 0.61
55 74869 5.0609424153589 1 VISp Pyramidal Cell Unknown 0.5743365077669 317.87330104847 0.6
56 66926 4.5242558497036 1 VISp Pyramidal Cell Unknown 0.40343065475301 190.53468890841 0.66
57 29842 2.0183340781979 1 VISp Pyramidal Cell Unknown 0.90476509617318 123.38303965273 0.5
58 40498 2.7376627843136 1 VISp Pyramidal Cell Unknown 0.22223319670107 271.15213437031 0.65
59 34708 2.34767172305 1 VISp Wide Interneuron Unknown 1.6710844762015 164.29229328798 0.62
60 22384 1.5142890992275 1 VISp Pyramidal Cell Unknown 0.67012151536812 183.73234786051 0.68
61 21293 1.4394835874094 1 VISp Pyramidal Cell Unknown 3.5222843187902 154.72349311034 0.62
62 73381 4.9616347396786 1 VISp Pyramidal Cell Unknown 0.68137528788106 89.237413663622 0.49
63 48129 3.2541488310042 1 VISp Pyramidal Cell Unknown 1.5998670240396 138.66447009657 0.69
64 59065 3.9930877565321 1 VISp Pyramidal Cell Unknown 0.35554050622196 328.43602583938 0.58
65 17786 1.2026545261715 1 VISp Pyramidal Cell Unknown 0 246.86456709898 0.58
66 35885 2.4257332381174 1 VISp Pyramidal Cell Unknown 0.94747108819841 207.38513341753 0.56
67 8182 0.55355893250334 1 VISp Pyramidal Cell Unknown 1.2221950623319 121.94069369677 0.67
68 43102 2.9152672159246 1 VISp Pyramidal Cell Unknown 1.2296413159482 174.63059829314 0.57
69 34284 2.3179822114946 1 VISp Pyramidal Cell Unknown 2.0709368801773 147.73788513084 0.68
70 38929 2.6317891450748 1 VISp Pyramidal Cell Unknown 1.7981453415192 154.54440877317 0.56
71 46992 3.1765656950569 1 VISp Narrow Interneuron Unknown 4.2773237997957 107.80083280789 0.22
72 7462 0.50523353934555 1 VISp Pyramidal Cell Unknown 0 221.78208071412 0.61
73 99859 6.7504536871162 1 VISp Wide Interneuron Unknown 2.1229934207232 263.63927929062 0.52
74 30099 2.0345709147127 1 VISp Pyramidal Cell Unknown 0.16611847569687 161.51804579557 0.59
75 3489 0.23618879585205 1 VISp Wide Interneuron Unknown 0.85984522785899 75.577934872236 0.46
76 20128 1.3607339918676 1 VISp Pyramidal Cell Unknown 4.3223370429253 198.90021535277 0.58
77 41866 2.8300592991587 1 VISp Narrow Interneuron Unknown 1.1704008025606 82.351952621473 0.12
78 95189 6.4383931442993 1 VISp Narrow Interneuron Unknown 4.9690615512297 142.32324043476 0.2
79 39278 2.6565524598906 1 VISp Pyramidal Cell Unknown 0.48373135088345 208.78705100719 0.6
80 52404 3.5430442094253 1 VISp Pyramidal Cell Unknown 1.1831157926876 96.226363435036 0.57
81 44938 3.0377830913632 1 VISp Pyramidal Cell Unknown 2.0695180025813 115.53174459403 0.63
82 62187 4.2058156007029 1 VISp Pyramidal Cell Unknown 0.16080531300754 247.17533378754 0.62
83 17498 1.1831830537136 1 VISp Pyramidal Cell Unknown 0 525.88497761966 0.58
84 12965 0.87708278706629 1 VISp Pyramidal Cell Unknown 0.38565368299267 223.42259243666 0.61
85 46441 3.1394560103052 1 VISp Pyramidal Cell Unknown 0.40912125061907 133.9381020101 0.59
86 8678 0.58665645036254 1 VISp Pyramidal Cell Unknown 1.1523392486748 148.58606353439 0.65
87 129226 8.7352357913406 1 VISp Wide Interneuron Unknown 2.1822233915775 235.68525611822 0.54
88 56915 3.8500795072028 1 VISp Pyramidal Cell Unknown 0.1932706667838 172.41509318379 0.65
89 29987 2.0282525152399 1 VISp Narrow Interneuron Unknown 2.0675626104645 93.23781817005 0.34
90 36336 2.4573722238638 1 VISp Pyramidal Cell Unknown 4.9262439453985 150.57493178229 0.55
91 3531 0.23902264392288 1 VISp Pyramidal Cell Unknown 0 166.2584836343 0.61
92 19410 1.3136125950989 1 VISp Pyramidal Cell Unknown 0.77279752704791 185.23167318625 0.64
93 384177 25.968956600166 1 VISp Narrow Interneuron Unknown 0.52059337232578 250.80788320901 0.24
94 158615 10.721980617608 1 VISp Wide Interneuron Unknown 0.056741165715727 619.70300942756 0.56
95 203289 13.741819309356 1 VISp Narrow Interneuron Unknown 0.48207232068631 212.44267835288 0.27
96 39233 2.6525595544936 1 VISp Pyramidal Cell Unknown 0.35684245405653 254.22326107777 0.57
97 163697 11.065376649933 1 VISp Wide Interneuron Unknown 0.73917054069409 354.23784521659 0.48
98 14038 0.94923613234678 1 VISp Pyramidal Cell Unknown 0.071235218692121 395.9481378704 0.62
99 69568 4.7027111277016 1 VISp Wide Interneuron Unknown 1.2505749770009 273.38764401365 0.51
100 25890 1.750257749791 1 VISp Pyramidal Cell Unknown 0.077249903437621 212.53691465199 0.59