Details for YMV09_171204

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  • Date & time: 2017-12-04,

  • Location: Alexandria

  • Animal subject: YMV09

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:40:00 by Yuta Senzai
    Updated: 2020-06-27 18:42:03 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV09_171204 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 24178.716

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 483574320 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 78 22828

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 38598 1.5975888039778 1 VISp Pyramidal Cell Unknown 2.3835431887663 95.230259173384 0.59
2 402053 16.639525053682 1 VISp Narrow Interneuron Unknown 15.09751201956 204.2767763367 0.18
3 289214 11.972342652384 1 VISp Narrow Interneuron Unknown 11.845899576092 169.48985561035 0.15
4 97743 4.0452796093372 1 VISp Narrow Interneuron Unknown 12.287324923524 144.60751525807 0.13
5 195333 8.0839785040327 1 VISp Narrow Interneuron Unknown 2.5853286439055 66.532506188728 0.31
6 378827 15.677989952788 1 VISp Narrow Interneuron Unknown 0.46195228956753 204.54717204615 0.22
7 97115 4.0191614697386 1 VISp Pyramidal Cell Unknown 0.072079493384132 296.60109897454 0.63
8 184425 7.6325890757133 1 VISp Pyramidal Cell Unknown 2.48339433374 168.75517885814 0.49
9 35893 1.501310571391 1 VISp Wide Interneuron Unknown 0.05572117125902 139.3204417972 0.59
10 17476 0.72374615032823 1 VISp Pyramidal Cell Unknown 0.11444266422522 254.87868406425 0.64
11 286989 11.877052007503 1 VISp Narrow Interneuron Unknown 3.3555293060013 145.54755476562 0.25
12 101788 4.2125327476124 1 VISp Narrow Interneuron Unknown 0.22595983809486 279.61703947224 0.21
13 235649 9.8101405040596 1 VISp Narrow Interneuron Unknown 18.620915004944 119.05089829196 0.42
14 18733 0.7755949993205 1 VISp Pyramidal Cell Unknown 0 356.24951816394 0.61
15 111637 4.6223346650665 1 VISp Pyramidal Cell Unknown 9.8533640280552 190.3403400457 0.53
16 194131 8.0340466185393 1 VISp Narrow Interneuron Unknown 0.046360447326805 386.57181713746 0.21
17 98563 4.1049134293195 1 VISp Narrow Interneuron Unknown 0.4261233931597 130.37253985782 0.12
18 50952 2.1276988056096 1 VISp Narrow Interneuron Unknown 4.0626471973622 145.31822039428 0.12
19 14897 1.1690762223296 1 VISp Narrow Interneuron Unknown 8.5252064173995 264.756094379 0.12
20 72597 3.0044319996777 1 VISp Narrow Interneuron Unknown 1.9835530393818 173.67986339793 0.12
21 10722 0.4437534310755 1 VISp Wide Interneuron Unknown 0.65286327177765 90.989942255427 0.68
22 68773 2.8462924104962 1 VISp Wide Interneuron Unknown 4.3912581972576 59.596849398387 0.6
23 68632 2.8411519507547 1 VISp Narrow Interneuron Unknown 1.3841939620002 98.030096962102 0.12
24 49109 2.0323884938189 1 VISp Wide Interneuron Unknown 0.69233745341994 113.57897588846 0.56
25 29150 1.2064707700142 1 VISp Pyramidal Cell Unknown 1.2006861063465 118.46331899086 0.65
26 42853 1.773465387123 1 VISp Wide Interneuron Unknown 0.14001353464168 155.88317260821 0.62
27 260635 10.807691344228 1 VISp Narrow Interneuron Unknown 1.8723502215742 196.2318354396 0.22
28 66393 2.7478485584933 1 VISp Wide Interneuron Unknown 1.2651936198093 124.04735709238 0.61
29 88944 3.680939070197 1 VISp Pyramidal Cell Unknown 1.9900161899622 66.656468093342 0.59
30 9333 0.38628279858051 1 VISp Pyramidal Cell Unknown 0.10714668381014 139.25887285408 0.73
31 74314 3.0760886170159 1 VISp Narrow Interneuron Unknown 4.6020938181231 116.13620934092 0.19
32 127555 5.2793285579791 1 VISp Narrow Interneuron Unknown 1.1994825761436 138.93646700139 0.15
33 37583 1.5553736591431 1 VISp Wide Interneuron Unknown 0.18625442354256 102.14595829783 0.7
34 24305 1.302528640839 1 VISp Narrow Interneuron Unknown 0.98745114174038 120.36167478862 0.39
35 95072 3.9345665182945 1 VISp Wide Interneuron Unknown 0.75732076741838 118.07396622445 0.62
36 87249 3.6107891965406 1 VISp Wide Interneuron Unknown 3.106052791436 123.03986529852 0.7
37 87748 3.6314625607241 1 VISp Wide Interneuron Unknown 0.88890914892647 124.97136393442 0.61
38 12680 0.52482784198126 1 VISp Wide Interneuron Unknown 0.47318611987382 55.189581521783 0.7
39 117985 4.882897009366 1 VISp Narrow Interneuron Unknown 6.2380811120058 134.04210407175 0.17
40 87131 3.6059263524378 1 VISp Wide Interneuron Unknown 0.51646371555474 86.671503933748 0.48
41 43871 1.817149123984 1 VISp Wide Interneuron Unknown 7.7044060997014 226.72663611617 0.45
42 139152 5.7590610445944 1 VISp Narrow Interneuron Unknown 11.613199954007 88.985095604757 0.11
43 31954 1.3332089939529 1 VISp Narrow Interneuron Unknown 0.43812981160418 226.49840053113 0.12
44 26005 1.0762909256546 1 VISp Narrow Interneuron Unknown 0.19227071716978 81.361637833349 0.14
45 35380 1.4644534715524 1 VISp Pyramidal Cell Unknown 0.53702656868287 83.853861477991 0.7
46 122125 5.0542105205218 1 VISp Pyramidal Cell Unknown 1.6376663254862 73.1996203401 0.5
47 80820 4.3250439645241 1 VISp Narrow Interneuron Unknown 9.0695372432566 234.39836837766 0.32
48 7949 0.32966124136912 1 VISp Wide Interneuron Unknown 0.25160397534281 88.641581327053 0.61
49 100836 4.1732383085199 1 VISp Wide Interneuron Unknown 4.4726089888532 59.934321822118 0.61
50 62892 2.6054828976408 1 VISp Pyramidal Cell Unknown 0.15900273484704 138.4879703698 0.52
51 120389 4.9823209940536 1 VISp Wide Interneuron Unknown 1.1379777222171 126.47935772074 0.56
52 58361 2.4152549174183 1 VISp Pyramidal Cell Unknown 1.2851047788763 99.981015153383 0.67
53 23381 1.0764185141333 1 VISp Pyramidal Cell Unknown 4.8329840468757 254.91139864566 0.46
54 99878 4.1337080434537 1 VISp Pyramidal Cell Unknown 3.8947515969483 140.26889204579 0.47
55 20262 0.83859091422172 1 VISp Wide Interneuron Unknown 1.6780179646629 112.01453840715 0.65
56 85978 3.5582589940089 1 VISp Wide Interneuron Unknown 0.44197352811184 118.30030074651 0.73
57 38137 1.5785531903332 1 VISp Narrow Interneuron Unknown 0.81285890342712 128.02110808691 0.14
58 113363 4.6916207117314 1 VISp Narrow Interneuron Unknown 15.41949313268 91.870608626001 0.24
59 8333 0.34495126546073 1 VISp Pyramidal Cell Unknown 0 136.74451343607 0.62
60 162968 6.7591186531991 1 VISp Narrow Interneuron Unknown 4.3566835206912 146.129507416 0.12
61 85012 3.5185300831911 1 VISp Wide Interneuron Unknown 2.5172916764692 96.396089634874 0.64
62 14433 0.59742914726462 1 VISp Wide Interneuron Unknown 0.13857132959191 138.73149950666 0.65
63 39415 1.6312964971754 1 VISp Pyramidal Cell Unknown 3.374349866802 116.96495839824 0.55
64 55200 2.2845614146695 1 VISp Wide Interneuron Unknown 0.36231884057971 117.79777795537 0.46
65 124551 5.1592367195276 1 VISp Narrow Interneuron Unknown 21.180078843205 146.47035248038 0.14
66 42569 1.7617178285453 1 VISp Narrow Interneuron Unknown 1.4799501985013 73.892759013644 0.39
67 202387 8.3756355271642 1 VISp Wide Interneuron Unknown 1.8578268367039 141.33633971982 0.54
68 51968 2.1509385890891 1 VISp Wide Interneuron Unknown 0.057727832512315 182.75760256783 0.58
69 299071 12.376915039473 1 VISp Pyramidal Cell Unknown 34.941535621976 97.963990645976 0.78
70 77462 3.2062168636875 1 VISp Narrow Interneuron Unknown 0.11618600087785 141.84477520651 0.24
71 220879 9.1410048973834 1 VISp Wide Interneuron Unknown 0.19920408911667 253.10480680167 0.6
72 196909 8.1490480416322 1 VISp Pyramidal Cell Unknown 0.005078488032543 338.92917665393 0.56
73 19849 0.82188415864722 1 VISp Pyramidal Cell Unknown 0.40304297445715 99.770500184343 0.64
74 8351 0.41620694596813 1 VISp Wide Interneuron Unknown 0.11974613818704 162.32504986516 0.43
75 5684 0.46447878662909 1 VISp Narrow Interneuron Unknown 0.70372976776918 342.18536542386 0.31
76 50725 2.0992758973545 1 VISp Pyramidal Cell Unknown 4.3173977328733 140.46163058318 0.57
77 239395 9.9073338482703 1 VISp Wide Interneuron Unknown 0.066835146932893 297.89822886449 0.51
78 269168 11.139421010417 1 VISp Narrow Interneuron Unknown 0.063157581881947 306.15214774124 0.21