Details for YMV10_171213

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  • Date & time: 2017-12-13,

  • Location: Alexandria

  • Animal subject: YMV10

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:40:20 by Yuta Senzai
    Updated: 2020-06-27 18:42:06 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV10_171213 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 18988.668

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 379773360 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 38 22838

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 37658 1.9854578629644 1 VISp Pyramidal Cell Unknown 0.47798608529396 209.63260160434 0.66
2 160839 8.4770004724202 1 VISp Wide Interneuron Unknown 0.22382631078283 145.22279086429 0.62
3 46192 2.4355743088122 1 VISp Pyramidal Cell Unknown 0.88759958434361 179.29046594133 0.57
4 67158 3.539691241553 1 VISp Wide Interneuron Unknown 0.47648828136633 114.33783115215 0.61
5 70154 3.6976502532648 1 VISp Wide Interneuron Unknown 1.4396898252416 99.505169813543 0.62
6 38265 2.0180265595131 1 VISp Wide Interneuron Unknown 2.0906833921338 113.52330077422 0.61
7 359062 18.924572739606 1 VISp Narrow Interneuron Unknown 5.4252468932942 269.48107192747 0.22
8 322102 16.977694007618 1 VISp Narrow Interneuron Unknown 0.13970729768831 160.29023419266 0.25
9 7631 0.40252754169821 1 VISp Pyramidal Cell Unknown 1.1793998165378 71.231894431106 0.65
10 25036 1.3202661125128 1 VISp Pyramidal Cell Unknown 1.7574692442882 96.082182413339 0.55
11 78033 4.1128432137632 1 VISp Wide Interneuron Unknown 1.7428523829662 135.97003311199 0.7
12 46720 2.4636598115253 1 VISp Pyramidal Cell Unknown 5.0941780821918 70.217910078082 0.67
13 89575 4.7211360520148 1 VISp Wide Interneuron Unknown 0.63633826402456 126.89717714065 0.52
14 148193 7.810657287764 1 VISp Wide Interneuron Unknown 1.0999170001282 97.554070664509 0.6
15 8878 0.4684418722904 1 VISp Pyramidal Cell Unknown 0.22527596305474 152.4252713374 0.68
16 44907 2.3684513233333 1 VISp Pyramidal Cell Unknown 4.9880864898568 96.287225941845 0.54
17 77711 4.0979680077637 1 VISp Pyramidal Cell Unknown 2.9982885305813 106.81537143477 0.61
18 110288 5.8130308731483 1 VISp Narrow Interneuron Unknown 10.454446539968 77.333930616755 0.33
19 128123 6.7539928212515 1 VISp Narrow Interneuron Unknown 1.038064984429 119.36821199061 0.2
20 12622 0.66561508939599 1 VISp Pyramidal Cell Unknown 0 200.04670841786 0.55
21 148706 7.8381170399922 1 VISp Wide Interneuron Unknown 0.97507834250131 91.504115843015 0.54
22 46428 2.4470530543481 1 VISp Pyramidal Cell Unknown 1.8523304902214 94.225766821143 0.53
23 94792 4.9989993510719 1 VISp Pyramidal Cell Unknown 0.90724955692463 118.27308774528 0.68
24 25326 1.3371845120221 1 VISp Wide Interneuron Unknown 1.5794045644792 155.48579632863 0.56
25 16093 0.85083200179905 1 VISp Wide Interneuron Unknown 0.37283290871808 109.3784165338 0.62
26 61383 3.2416921867695 1 VISp Narrow Interneuron Unknown 0.081455777658309 144.55221404314 0.16
27 142309 7.5043081654755 1 VISp Narrow Interneuron Unknown 0.049188737184577 281.40024280967 0.23
28 182477 9.6175217176518 1 VISp Narrow Interneuron Unknown 0.52609369947993 60.607991634729 0.25
29 17339 0.91542708433868 1 VISp Wide Interneuron Unknown 0.057673452909626 128.17531802366 0.57
30 118527 6.2471241116142 1 VISp Pyramidal Cell Unknown 0.016873792469226 185.82657589351 0.61
31 62750 3.3072590522968 1 VISp Wide Interneuron Unknown 0 303.06411380738 0.62
32 44016 2.3214843242504 1 VISp Pyramidal Cell Unknown 2.4309342057434 116.53296942461 0.66
33 105219 5.5460172557834 1 VISp Wide Interneuron Unknown 0.18057575152777 201.86692460455 0.59
34 278115 14.664993717185 1 VISp Narrow Interneuron Unknown 2.2113154630279 105.03237118998 0.22
35 73927 3.8966901507956 1 VISp Narrow Interneuron Unknown 1.2850514696931 116.42317461365 0.21
36 122386 6.4504488877005 1 VISp Narrow Interneuron Unknown 0.62098606049712 150.05026810753 0.32
37 286803 15.115902460073 1 VISp Wide Interneuron Unknown 0.024406997137408 322.35847208573 0.51
38 111613 5.8838287661017 1 VISp Wide Interneuron Unknown 0.24190730470465 199.00717516224 0.57