Details for YMV13_180127

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  • Date & time: 2018-01-27,

  • Location: Alexandria

  • Animal subject: YMV13

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:41:51 by Yuta Senzai
    Updated: 2020-06-27 18:42:11 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV13_180127 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 22109.328

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 442186560 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 79 22868

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 248732 11.259965320781 1 VISp Narrow Interneuron Unknown 5.3913449013396 75.508404035441 0.26
2 296133 13.403299571245 1 VISp Narrow Interneuron Unknown 2.7420111909176 119.41246903031 0.24
3 313101 14.171416586187 1 VISp Narrow Interneuron Unknown 4.8578573687085 131.18339739139 0.21
4 204181 9.241348373653 1 VISp Wide Interneuron Unknown 1.2439942991757 203.8302298527 0.58
5 473703 21.440336770384 1 VISp Narrow Interneuron Unknown 4.2959407054631 241.88828623614 0.26
6 91491 4.1409510281905 1 VISp Pyramidal Cell Unknown 0.054650184171121 519.98910172698 0.52
7 213111 9.6455383794176 1 VISp Wide Interneuron Unknown 0.73670528503925 219.18450171497 0.51
8 34666 1.5697246776679 1 VISp Wide Interneuron Unknown 0.49039404603935 143.03775029996 0.71
9 84166 3.8094985922754 1 VISp Wide Interneuron Unknown 1.2356533517097 156.55090049247 0.6
10 227382 10.291597037208 1 VISp Narrow Interneuron Unknown 0.36062661072556 168.40155832781 0.24
11 342263 15.491380181163 1 VISp Narrow Interneuron Unknown 2.9830861062984 215.02476313067 0.22
12 53803 2.4351791346657 1 VISp Pyramidal Cell Unknown 0.111517945096 234.41021473358 0.71
13 106156 4.8047294839333 1 VISp Wide Interneuron Unknown 1.2151927352199 131.17693702076 0.57
14 111273 5.036624328931 1 VISp Narrow Interneuron Unknown 0.15277740332336 111.18047931056 0.37
15 26713 1.2096527892568 1 VISp Pyramidal Cell Unknown 0.56152435143937 141.04116054792 0.66
16 17652 0.86048110306697 1 VISp Pyramidal Cell Unknown 4.1921595286653 101.68336556281 0.61
17 29574 1.3385465498606 1 VISp Wide Interneuron Unknown 0.16906742408873 130.64751683723 0.7
18 93593 4.2380168486493 1 VISp Pyramidal Cell Unknown 2.6070325772227 89.012535019166 0.7
19 43644 1.9758059027025 1 VISp Pyramidal Cell Unknown 1.9475758408945 129.70661860234 0.61
20 69068 3.1260941094591 1 VISp Wide Interneuron Unknown 0.91214455319395 135.52701658044 0.71
21 60580 2.7420744689579 1 VISp Pyramidal Cell Unknown 0.41267745130406 140.08050261683 0.63
22 14061 0.63669519323158 1 VISp Wide Interneuron Unknown 0.35559348552735 77.306260444266 0.72
23 34914 1.5802584343527 1 VISp Pyramidal Cell Unknown 1.2315976399152 66.177881673727 0.54
24 100447 4.5462857347487 1 VISp Wide Interneuron Unknown 0.75661791790696 163.38580314217 0.58
25 7981 0.36156224645397 1 VISp Pyramidal Cell Unknown 1.3782733993234 89.011320287649 0.61
26 43127 1.9520577256878 1 VISp Wide Interneuron Unknown 1.2984905047882 85.10794337167 0.71
27 25441 1.1515796459173 1 VISp Wide Interneuron Unknown 0.70751935851578 89.325028263266 0.54
28 209855 9.4981278282805 1 VISp Wide Interneuron Unknown 19.937575945296 120.96621403708 0.6
29 90310 4.0875654742015 1 VISp Wide Interneuron Unknown 2.0817185250803 73.967404401466 0.69
30 13577 0.61497155613873 1 VISp Wide Interneuron Unknown 0.22096192089563 167.70148967027 0.6
31 6515 0.29566253619977 1 VISp Pyramidal Cell Unknown 0.46047582501919 166.22057013641 0.67
32 80020 3.6219781097592 1 VISp Wide Interneuron Unknown 0.88727818045489 152.65915254271 0.6
33 29509 1.3359818361704 1 VISp Pyramidal Cell Unknown 1.3555186553255 134.24935556281 0.58
34 83833 3.7943249742415 1 VISp Pyramidal Cell Unknown 4.5447496809132 69.636514382465 0.7
35 202529 9.8790148350752 1 VISp Narrow Interneuron Unknown 10.309634669603 138.06185374038 0.18
36 12306 0.55726719464435 1 VISp Pyramidal Cell Unknown 2.600357549163 177.84288517819 0.55
37 49774 2.2529226753884 1 VISp Narrow Interneuron Unknown 0.74335998714188 111.51424438858 0.18
38 82979 3.7582677082991 1 VISp Wide Interneuron Unknown 0.72307451282855 59.989814358756 0.74
39 24073 1.0898032955076 1 VISp Wide Interneuron Unknown 1.0385078718897 95.879238756297 0.61
40 29752 1.3474945047829 1 VISp Pyramidal Cell Unknown 0.50416778703953 137.91438804775 0.61
41 10934 0.49506022689058 1 VISp Pyramidal Cell Unknown 0.54874702762027 136.79794477654 0.57
42 9698 0.43920616542561 1 VISp Pyramidal Cell Unknown 0.9280263971953 148.22525706518 0.7
43 123121 5.5725811518474 1 VISp Narrow Interneuron Unknown 2.9808074983147 112.2797379284 0.27
44 183178 8.2907285650282 1 VISp Wide Interneuron Unknown 0.884385679503 152.5987279851 0.59
45 25449 1.1523475842197 1 VISp Pyramidal Cell Unknown 2.0040080160321 146.39417484034 0.65
46 37504 1.6978032375429 1 VISp Pyramidal Cell Unknown 0.39995733788396 195.9408698255 0.66
47 38710 1.7521363627576 1 VISp Pyramidal Cell Unknown 3.7458021183157 88.456744299875 0.62
48 181301 8.2058447755525 1 VISp Wide Interneuron Unknown 1.2906713145542 242.33738742895 0.58
49 149389 6.7615333480614 1 VISp Wide Interneuron Unknown 0.77649626143826 199.97610821668 0.55
50 83907 3.7976834398055 1 VISp Pyramidal Cell Unknown 0.82233901819872 131.79903993059 0.54
51 12779 0.57844387024595 1 VISp Wide Interneuron Unknown 1.0172939979654 128.27822966263 0.67
52 20729 0.94204730743529 1 VISp Narrow Interneuron Unknown 0 139.41529290649 0.23
53 226033 10.23040822546 1 VISp Narrow Interneuron Unknown 1.729835908916 145.92292452906 0.24
54 50964 2.3066736984519 1 VISp Pyramidal Cell Unknown 0.27470371242446 115.7723437571 0.68
55 15067 0.68243362670566 1 VISp Pyramidal Cell Unknown 0 261.09389284652 0.69
56 11736 0.53295074469308 1 VISp Pyramidal Cell Unknown 0 63.21936241104 0.62
57 48380 2.1905201157968 1 VISp Pyramidal Cell Unknown 1.0334849111203 123.99387469498 0.63
58 73751 3.338116468767 1 VISp Wide Interneuron Unknown 0.013559138181177 120.14662339317 0.63
59 13359 0.60496247197113 1 VISp Pyramidal Cell Unknown 0.52399131671532 180.703430267 0.53
60 24104 1.0915886586166 1 VISp Pyramidal Cell Unknown 0.12446067042814 159.65291880545 0.63
61 64201 2.9058793920735 1 VISp Wide Interneuron Unknown 1.7133689506394 71.507556308661 0.54
62 235226 10.647219292304 1 VISp Narrow Interneuron Unknown 2.8865856665505 83.783485075308 0.38
63 9531 0.56318399400717 1 VISp Pyramidal Cell Unknown 0.52460392403735 142.51823998565 0.74
64 164930 7.4650329537324 1 VISp Wide Interneuron Unknown 2.0008488449645 159.21675414225 0.61
65 110594 5.0069055130007 1 VISp Narrow Interneuron Unknown 3.372696529649 138.84570784921 0.11
66 27486 1.2441508000304 1 VISp Wide Interneuron Unknown 0.21829294913774 138.16385583359 0.71
67 180336 8.1620898458596 1 VISp Wide Interneuron Unknown 0.13308490817141 478.7879883434 0.58
68 79896 3.6161341199415 1 VISp Pyramidal Cell Unknown 0.062581355762491 276.02144381817 0.55
69 19866 0.8992700424624 1 VISp Pyramidal Cell Unknown 0.15101177891876 190.89540690908 0.6
70 9882 0.44750294578935 1 VISp Narrow Interneuron Unknown 0 223.29089743521 0.12
71 16637 0.75337715960921 1 VISp Wide Interneuron Unknown 0.12021398088598 108.48532323508 0.62
72 50544 2.2893647784332 1 VISp Wide Interneuron Unknown 0.039569484013928 174.78928381302 0.73
73 27535 1.2467841905021 1 VISp Wide Interneuron Unknown 0.43580897040131 61.421201262876 0.63
74 38063 1.7231104551625 1 VISp Narrow Interneuron Unknown 1.1822504794683 75.935541968865 0.31
75 528593 23.924369892276 1 VISp Narrow Interneuron Unknown 0.051078996505818 308.75192502284 0.2
76 8529 0.38630151195803 1 VISp Pyramidal Cell Unknown 0.2344940790245 360.83362148683 0.58
77 63924 2.8933117367826 1 VISp Pyramidal Cell Unknown 0 250.7328408418 0.71
78 21052 0.95293351293435 1 VISp Pyramidal Cell Unknown 0.047501425042751 281.93866076325 0.66
79 49070 2.221023323257 1 VISp Wide Interneuron Unknown 0.081516201345017 440.40292428231 0.7