Details for YMV14_180128

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  • Date & time: 2018-01-28,

  • Location: Alexandria

  • Animal subject: YMV14

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:42:46 by Yuta Senzai
    Updated: 2020-06-27 18:42:13 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV14_180128 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 19880.316

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 397606320 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 79 22878

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 201759 10.158924155335 1 VISp Narrow Interneuron Unknown 0.034694858717579 365.72376047879 0.27
2 362897 18.272505423068 1 VISp Narrow Interneuron Unknown 3.4582815509635 81.202993363856 0.36
3 529785 26.675487046857 1 VISp Narrow Interneuron Unknown 0.99096803420255 327.43408480585 0.2
4 68738 3.4615984617546 1 VISp Wide Interneuron Unknown 0.18912391981146 94.985589988503 0.7
5 151419 7.6245127932725 1 VISp Pyramidal Cell Unknown 1.5321723165521 128.90568540401 0.56
6 196605 9.8999140617668 1 VISp Wide Interneuron Unknown 1.0426998296076 129.33311957749 0.55
7 161212 8.118135908166 1 VISp Narrow Interneuron Unknown 32.410738654691 90.02000465364 0.27
8 15482 0.77956465271889 1 VISp Wide Interneuron Unknown 0 221.75975156362 0.7
9 634441 31.945122953309 1 VISp Narrow Interneuron Unknown 3.6157814517032 127.96845176652 0.23
10 26102 1.3146558024784 1 VISp Wide Interneuron Unknown 1.3025821776109 111.38172642495 0.65
11 247271 12.450730544428 1 VISp Narrow Interneuron Unknown 3.5426718054281 206.90537339172 0.26
12 40174 2.1226457126617 1 VISp Narrow Interneuron Unknown 4.0822422462289 139.74727772755 0.21
13 200264 10.08754419194 1 VISp Narrow Interneuron Unknown 5.1132505093277 92.519487715042 0.25
14 110753 5.5772508092479 1 VISp Narrow Interneuron Unknown 3.9366879452475 152.26122217735 0.24
15 51274 2.5830950789923 1 VISp Narrow Interneuron Unknown 0.097515309903655 107.51020224248 0.12
16 40355 2.0320991908932 1 VISp Pyramidal Cell Unknown 2.7258084500062 87.215557347219 0.63
17 22314 1.1236205727696 1 VISp Wide Interneuron Unknown 1.0755579456843 100.90918796182 0.66
18 5661 0.28507078914244 1 VISp Pyramidal Cell Unknown 0.17664723547076 219.25217418932 0.55
19 80158 4.0361234000999 1 VISp Narrow Interneuron Unknown 2.332892537239 105.84251192635 0.24
20 12427 0.62580098604571 1 VISp Pyramidal Cell Unknown 1.1265792226603 96.506762340414 0.68
21 37276 1.8769112385332 1 VISp Wide Interneuron Unknown 0.18778838931216 104.57611469989 0.57
22 59423 2.9922620470051 1 VISp Wide Interneuron Unknown 2.3223331033438 98.806664120443 0.64
23 139407 7.019391664253 1 VISp Pyramidal Cell Unknown 1.6641918985417 111.94504964946 0.49
24 6411 0.32291430670526 1 VISp Pyramidal Cell Unknown 2.6516924036812 203.51458103498 0.57
25 52155 2.626241524146 1 VISp Pyramidal Cell Unknown 3.585466398236 92.821038092943 0.57
26 47540 2.3940808149677 1 VISp Pyramidal Cell Unknown 3.2604122843921 110.59232206205 0.72
27 24813 1.249425933397 1 VISp Wide Interneuron Unknown 0.60452182323782 146.35128855129 0.73
28 46404 2.3365553265123 1 VISp Wide Interneuron Unknown 2.4351349021636 119.4057577276 0.6
29 11750 0.591646584671 1 VISp Pyramidal Cell Unknown 0.76595744680851 73.487887513658 0.56
30 33332 1.6786772349736 1 VISp Pyramidal Cell Unknown 1.2000480019201 152.0791515345 0.54
31 31138 1.5678573710412 1 VISp Pyramidal Cell Unknown 0.51384160832423 119.63172792965 0.62
32 26100 1.3141828758432 1 VISp Pyramidal Cell Unknown 0.99616858237548 90.286016650319 0.65
33 60713 3.057021699844 1 VISp Pyramidal Cell Unknown 0.4282443628218 154.19304108407 0.64
34 196725 9.9054494699974 1 VISp Narrow Interneuron Unknown 1.1538950311348 124.15679694246 0.25
35 20460 1.0305251756507 1 VISp Narrow Interneuron Unknown 0.39100684261975 120.28285076588 0.35
36 24629 1.2403197060644 1 VISp Narrow Interneuron Unknown 0.48723050062934 97.514244262 0.34
37 53225 2.6809858089339 1 VISp Pyramidal Cell Unknown 6.9891968060122 88.580418766939 0.69
38 224705 11.314575413338 1 VISp Narrow Interneuron Unknown 12.015753988563 101.66867902907 0.3
39 206545 10.403276939811 1 VISp Wide Interneuron Unknown 21.714396378513 156.72808157197 0.6
40 103635 5.2182013147828 1 VISp Narrow Interneuron Unknown 2.9237226805616 115.45360233537 0.26
41 53585 2.6981122056373 1 VISp Wide Interneuron Unknown 2.1647849211533 81.083818650316 0.61
42 19049 0.95952171824192 1 VISp Pyramidal Cell Unknown 0.36747335818153 158.64358484898 0.67
43 159669 8.0848541825236 1 VISp Wide Interneuron Unknown 19.659420426006 92.829925524632 0.48
44 17198 0.8660288493607 1 VISp Wide Interneuron Unknown 0.17443888824282 73.234268872559 0.55
45 17037 0.85796698501042 1 VISp Pyramidal Cell Unknown 0.58695779773434 201.05089360136 0.7
46 33278 1.6759887687197 1 VISp Wide Interneuron Unknown 0.18029929683274 215.71017073979 0.56
47 55851 2.8126150835011 1 VISp Pyramidal Cell Unknown 1.0026678125727 171.25251105559 0.56
48 66288 3.3377644260823 1 VISp Narrow Interneuron Unknown 2.0516533912624 112.13580674607 0.3
49 11860 0.59730102882257 1 VISp Narrow Interneuron Unknown 1.3490725126476 156.35451199772 0.34
50 16610 0.83674433007483 1 VISp Pyramidal Cell Unknown 0.060204695966285 192.71951506471 0.65
51 73388 3.6952649329932 1 VISp Narrow Interneuron Unknown 3.1612797732599 117.23743247739 0.26
52 41920 2.1113978332062 1 VISp Narrow Interneuron Unknown 0 267.00360369465 0.22
53 19652 0.98999380586386 1 VISp Wide Interneuron Unknown 0.71239568491757 119.27165156996 0.61
54 69109 3.4797764297646 1 VISp Pyramidal Cell Unknown 3.6174738456641 78.9629251797 0.65
55 47439 2.388639910756 1 VISp Pyramidal Cell Unknown 6.9773814793735 100.972923205 0.66
56 95584 4.8128171184832 1 VISp Wide Interneuron Unknown 3.4106126548376 96.412589976633 0.63
57 37402 1.8834104382492 1 VISp Pyramidal Cell Unknown 4.2243730281803 87.084909528289 0.59
58 222528 11.205232875174 1 VISp Narrow Interneuron Unknown 7.4687230371009 151.80846693294 0.28
59 15783 0.7955109392797 1 VISp Pyramidal Cell Unknown 0.3167965532535 171.33088614054 0.7
60 18005 0.90827864735825 1 VISp Pyramidal Cell Unknown 0.33324076645376 194.43087634644 0.72
61 63303 3.1877137777264 1 VISp Pyramidal Cell Unknown 2.638105619007 82.824268235417 0.59
62 46341 2.333618951252 1 VISp Wide Interneuron Unknown 0.21579163160053 139.20840410129 0.67
63 28520 1.4362428784706 1 VISp Pyramidal Cell Unknown 0.10518934081346 204.70416225646 0.6
64 46758 2.3545690953873 1 VISp Pyramidal Cell Unknown 8.9824201206211 163.97774793655 0.58
65 57389 2.8897278779325 1 VISp Pyramidal Cell Unknown 0.17424942062068 138.72216375085 0.61
66 12842 0.64676691483338 1 VISp Pyramidal Cell Unknown 0.31147796293412 227.98178956325 0.68
67 22537 1.1355229940434 1 VISp Wide Interneuron Unknown 0.088742956027865 134.90611000804 0.58
68 17301 0.87191017179347 1 VISp Narrow Interneuron Unknown 0.17340038148084 162.97637550364 0.15
69 67192 3.3842241649607 1 VISp Pyramidal Cell Unknown 0.47624717228241 81.959972363633 0.6
70 34133 1.7187525185153 1 VISp Pyramidal Cell Unknown 2.6953388216682 116.00142844906 0.58
71 184341 9.2819989311207 1 VISp Wide Interneuron Unknown 1.8064348137419 171.79615079222 0.57
72 139164 7.0072668621215 1 VISp Pyramidal Cell Unknown 0.035928832169239 178.74057925252 0.64
73 41926 2.1119815847054 1 VISp Pyramidal Cell Unknown 0.023851547965463 316.95026569682 0.65
74 12849 0.64863281010707 1 VISp Pyramidal Cell Unknown 0 222.70915624071 0.72
75 42058 2.1177019157818 1 VISp Pyramidal Cell Unknown 0.99862095201864 166.6558891792 0.59
76 17251 0.87377771819663 1 VISp Wide Interneuron Unknown 0.17390296214712 142.76150144165 0.58
77 142890 7.1947316196302 1 VISp Wide Interneuron Unknown 1.0077682133109 205.42391189965 0.59
78 332128 16.72315525872 1 VISp Narrow Interneuron Unknown 0.24087098949802 164.1257079071 0.29
79 669842 33.727509075558 1 VISp Narrow Interneuron Unknown 0.65687132189382 272.4742885252 0.22