Details for YMV15_180205

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  • Date & time: 2018-02-05,

  • Location: Alexandria

  • Animal subject: YMV15

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:43:11 by Yuta Senzai
    Updated: 2020-06-27 18:42:16 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV15_180205 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 22441.968

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 448839360 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 79 22888

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 41934 1.8702674659985 1 VISp Pyramidal Cell Unknown 0.8107979205418 161.01990612415 0.66
2 199491 8.8951297417885 1 VISp Narrow Interneuron Unknown 2.4412128867969 80.292277458856 0.38
3 109271 4.8734781695163 1 VISp Pyramidal Cell Unknown 2.6448005417723 59.799297094525 0.61
4 27232 1.2144686989658 1 VISp Pyramidal Cell Unknown 0.62426556991774 175.34579678658 0.65
5 89843 4.0062146603908 1 VISp Pyramidal Cell Unknown 0.28939372015627 135.45589695127 0.65
6 119459 5.3268213875685 1 VISp Wide Interneuron Unknown 0.31810077097582 96.131285235269 0.56
7 281929 12.571413690872 1 VISp Narrow Interneuron Unknown 7.4061199805625 88.636564250681 0.31
8 488433 21.778796671823 1 VISp Narrow Interneuron Unknown 5.2719615586989 145.50717083181 0.27
9 811578 36.189171985152 1 VISp Narrow Interneuron Unknown 2.7341795859424 270.86957092467 0.2
10 1046834 46.677303912855 1 VISp Narrow Interneuron Unknown 0.17576807784233 467.89814224196 0.2
11 47973 2.1397029223225 1 VISp Pyramidal Cell Unknown 0.62535176036521 151.86686843814 0.62
12 329254 14.681106278927 1 VISp Unknown Unknown 1.7585207772723 238.96233996585 0.52
13 743692 33.160529977496 1 VISp Narrow Interneuron Unknown 0.92780344551239 324.92241744465 0.23
14 406994 18.14745477849 1 VISp Narrow Interneuron Unknown 6.1917374703313 99.979080245386 0.25
15 416120 18.556436551996 1 VISp Narrow Interneuron Unknown 6.3395174468903 165.38126162875 0.31
16 68552 3.0566923733907 1 VISp Pyramidal Cell Unknown 0.68561092309488 364.61924540736 0.72
17 72443 3.2301841736038 1 VISp Wide Interneuron Unknown 2.0015736510084 96.365863157062 0.67
18 76786 3.4239313340929 1 VISp Narrow Interneuron Unknown 1.4585992238168 130.91913841152 0.32
19 59233 2.6413828156543 1 VISp Pyramidal Cell Unknown 1.2830685597555 110.05635927905 0.71
20 84100 3.7506891333808 1 VISp Pyramidal Cell Unknown 3.3174791914388 79.429630752368 0.67
21 65583 2.924923426472 1 VISp Wide Interneuron Unknown 1.662016071238 101.09937631456 0.64
22 53038 2.3650588564347 1 VISp Pyramidal Cell Unknown 2.8847241600362 110.573759199 0.53
23 68345 3.0481233653953 1 VISp Wide Interneuron Unknown 1.1559002121589 61.164000875552 0.68
24 107834 4.8082458370654 1 VISp Wide Interneuron Unknown 1.4652150527663 136.89368183022 0.55
25 15824 0.7060840985294 1 VISp Pyramidal Cell Unknown 0.37917087967644 150.74877306659 0.65
26 13598 0.60665731316312 1 VISp Pyramidal Cell Unknown 0.1470804530078 175.79783952459 0.65
27 79559 3.5476236582331 1 VISp Pyramidal Cell Unknown 2.2373332998152 87.156496529719 0.62
28 30574 1.3636808263768 1 VISp Pyramidal Cell Unknown 1.9951592856676 171.94485152226 0.67
29 23387 1.0429068707264 1 VISp Narrow Interneuron Unknown 0.89793475007483 123.32823622918 0.23
30 13590 0.60622825526942 1 VISp Pyramidal Cell Unknown 2.2075055187638 173.61888514001 0.53
31 5917 0.26407267944225 1 VISp Pyramidal Cell Unknown 0.1690045631232 105.85922616773 0.71
32 29166 1.301009459065 1 VISp Pyramidal Cell Unknown 0.58287046561064 104.98952513013 0.61
33 81654 3.6410806387905 1 VISp Narrow Interneuron Unknown 1.3104073284836 152.16921140207 0.33
34 58653 2.6152965638531 1 VISp Wide Interneuron Unknown 0.35803795202291 119.2748912701 0.56
35 108483 4.8371478831633 1 VISp Pyramidal Cell Unknown 0.57151811804615 148.72819334413 0.73
36 96843 4.3181584432717 1 VISp Pyramidal Cell Unknown 0.44401763679357 143.28486966009 0.59
37 82757 3.6900634070493 1 VISp Narrow Interneuron Unknown 1.7279505056974 90.785705525015 0.26
38 28559 1.2742330575653 1 VISp Pyramidal Cell Unknown 0.2451066213803 198.269626034 0.61
39 18768 0.83713287716758 1 VISp Pyramidal Cell Unknown 0.26641091219096 167.59950957107 0.67
40 78330 3.492784754143 1 VISp Wide Interneuron Unknown 0.26809651474531 202.39312659619 0.65
41 14332 0.63929978420666 1 VISp Pyramidal Cell Unknown 0.34886966229417 158.29674764384 0.66
42 30057 1.3405481527577 1 VISp Pyramidal Cell Unknown 0.56559204178727 113.41192944148 0.59
43 37527 1.6737496512074 1 VISp Narrow Interneuron Unknown 0.21317984384576 109.05481577212 0.2
44 56538 2.5217423730445 1 VISp Pyramidal Cell Unknown 3.7143160352329 96.523636554769 0.61
45 183525 8.1837021815195 1 VISp Pyramidal Cell Unknown 6.6966353357853 148.57156408366 0.22
46 30102 1.3449547906172 1 VISp down state Unknown 0.1661019201382 133.4240651042 0.59
47 15485 0.69962385695846 1 VISp Narrow Interneuron Unknown 2.8414594769131 95.212599545183 0.3
48 50895 2.269812918001 1 VISp Narrow Interneuron Unknown 4.7941841045289 76.054369591502 0.15
49 185978 8.2925797717254 1 VISp Wide Interneuron Unknown 1.3388680381551 109.11403633792 0.48
50 146068 6.5133998739133 1 VISp Narrow Interneuron Unknown 3.4709861160555 102.39576795906 0.2
51 43010 1.9180086273865 1 VISp Pyramidal Cell Unknown 1.0462683096954 169.73718274192 0.66
52 31244 1.39332889031 1 VISp Pyramidal Cell Unknown 0.22404301625912 226.31595593023 0.64
53 18386 0.82079055603547 1 VISp Pyramidal Cell Unknown 0 173.20373373411 0.61
54 6997 0.31208624222529 1 VISp Pyramidal Cell Unknown 0.57167357438902 156.90014094395 0.57
55 18685 0.83326238042102 1 VISp Pyramidal Cell Unknown 0.37463205780037 178.24195467907 0.64
56 21533 0.96030791361464 1 VISp Pyramidal Cell Unknown 0.41796312636419 143.44937425804 0.61
57 131398 5.8589822154019 1 VISp Pyramidal Cell Unknown 1.9330583418317 175.65741695585 0.59
58 13319 0.59421433988481 1 VISp Pyramidal Cell Unknown 0.22524213529544 211.49100000345 0.64
59 75494 3.3665801067968 1 VISp Wide Interneuron Unknown 5.245449969534 92.582524656997 0.78
60 94004 4.1915728112937 1 VISp Pyramidal Cell Unknown 5.0423386238883 77.387732234213 0.55
61 20805 0.92804074026141 1 VISp Pyramidal Cell Unknown 0.28839221341024 167.0510359479 0.69
62 22917 1.0222688696176 1 VISp Pyramidal Cell Unknown 0.61090020508793 219.240131688 0.57
63 100577 4.4846609475353 1 VISp Pyramidal Cell Unknown 0.31816419260865 132.56538020598 0.61
64 67133 2.9938033737524 1 VISp Pyramidal Cell Unknown 0.14895803852055 250.89673893969 0.64
65 124774 5.5636514212976 1 VISp Pyramidal Cell Unknown 0.12823184317246 207.58323263055 0.65
66 33932 1.5135565986477 1 VISp Pyramidal Cell Unknown 0.58941412236237 165.54266337781 0.64
67 131794 5.8780247644251 1 VISp Pyramidal Cell Unknown 6.3584078182618 104.12474097602 0.57
68 270763 12.073175680865 1 VISp Pyramidal Cell Unknown 17.229089646665 191.04994393083 0.13
69 319687 14.255883405873 1 VISp Narrow Interneuron Unknown 0.1845555183664 241.16918133932 0.22
70 51140 2.280941997913 1 VISp Pyramidal Cell Unknown 0.058662495111459 174.90602882774 0.74
71 78753 3.5116436036461 1 VISp Pyramidal Cell Unknown 0.063489644838927 190.46089393796 0.67
72 34281 1.5289070299626 1 VISp Pyramidal Cell Unknown 0 375.42629307905 0.64
73 99091 4.4185550676577 1 VISp Pyramidal Cell Unknown 0.45412802373576 182.09521367945 0.64
74 222309 9.9126046205916 1 VISp Pyramidal Cell Unknown 1.9387429208894 154.91056593994 0.56
75 2527 0.11275250333592 1 VISp Pyramidal Cell Unknown 0 194.05016329685 0.57
76 86924 3.8758882301455 1 VISp Pyramidal Cell Unknown 0.63273664350467 223.9364807455 0.66
77 275650 12.29138857112 1 VISp Narrow Interneuron Unknown 0.3700344639942 301.85779381232 0.22
78 48419 2.1592069449931 1 VISp Pyramidal Cell Unknown 0 341.53113317001 0.68
79 287168 12.804559758807 1 VISp Wide Interneuron Unknown 0.35519277913974 242.57316103478 0.5