Details for YMV16_180206

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  • Date & time: 2018-02-06,

  • Location: Alexandria

  • Animal subject: YMV16

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:43:39 by Yuta Senzai
    Updated: 2020-06-27 18:42:19 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV16_180206 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 27082.584

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 541651680 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 51 22898

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 19667 0.72663225422963 1 VISp Pyramidal Cell Unknown 0.96608532058779 74.106505846959 0.66
2 86310 3.1887661501275 1 VISp Pyramidal Cell Unknown 4.4838373305527 102.94045313078 0.67
3 608923 22.496482203447 1 VISp Narrow Interneuron Unknown 13.51402394063 86.399338879831 0.26
4 65990 2.4379726322037 1 VISp Pyramidal Cell Unknown 2.6367631459312 110.91956907568 0.62
5 152683 5.6408817182512 1 VISp Narrow Interneuron Unknown 2.947282932612 81.489207083393 0.3
6 48246 1.7825946019872 1 VISp Pyramidal Cell Unknown 1.6167143390126 224.37294262079 0.63
7 481646 17.794212503372 1 VISp Narrow Interneuron Unknown 0.17024951935654 165.84441322763 0.29
8 318668 11.773216269556 1 VISp Wide Interneuron Unknown 0.48953770067908 305.44733882065 0.52
9 289896 10.710063254621 1 VISp Pyramidal Cell Unknown 0.51742693931617 504.27128254684 0.54
10 6122 0.22617641884805 1 VISp Pyramidal Cell Unknown 0.49003593596864 116.02953904219 0.63
11 100478 3.7121893949438 1 VISp Wide Interneuron Unknown 0.26871553972014 160.20834397162 0.58
12 39957 1.4762076071035 1 VISp Wide Interneuron Unknown 0.42545736666917 86.879822999764 0.65
13 887174 32.776164993001 1 VISp Narrow Interneuron Unknown 13.922860678965 110.35142949729 0.2
14 4336 0.16025897762079 1 VISp Pyramidal Cell Unknown 0.69188191881919 116.74414780525 0.64
15 12312 0.45532695340464 1 VISp Pyramidal Cell Unknown 0.24366471734893 94.719995917549 0.71
16 10915 0.40328051909707 1 VISp Pyramidal Cell Unknown 0.82455336692625 94.849057978207 0.62
17 13563 0.50110420082232 1 VISp Pyramidal Cell Unknown 0.9584900095849 106.92332255498 0.63
18 31347 1.1581380435819 1 VISp Pyramidal Cell Unknown 2.5839793281654 90.795757283116 0.64
19 111538 4.120766332196 1 VISp Pyramidal Cell Unknown 2.9765640409547 73.581054299457 0.44
20 191575 7.07769126749 1 VISp Narrow Interneuron Unknown 12.381573796163 105.31980413097 0.14
21 272091 10.052291414713 1 VISp Wide Interneuron Unknown 0.12863343513751 282.30857104485 0.47
22 100784 3.7234787115617 1 VISp Pyramidal Cell Unknown 2.3019526909033 75.978318475131 0.65
23 162954 6.02036000677 1 VISp Narrow Interneuron Unknown 2.9947101636045 95.211578743165 0.19
24 33821 1.249505825729 1 VISp Wide Interneuron Unknown 0.11826971408297 87.652582194937 0.43
25 55160 2.0379550996705 1 VISp Pyramidal Cell Unknown 1.5591007976795 79.301250962734 0.63
26 211913 7.8290214684091 1 VISp Narrow Interneuron Unknown 1.0287240518515 104.09543464236 0.27
27 95279 3.5200749166107 1 VISp Pyramidal Cell Unknown 1.4693689060548 160.92222275113 0.69
28 78963 2.9173137940734 1 VISp Narrow Interneuron Unknown 6.1801096716184 93.89893070822 0.15
29 43943 1.6235202451456 1 VISp Pyramidal Cell Unknown 0.77372960426006 109.86698019765 0.61
30 211177 7.801844318949 1 VISp Pyramidal Cell Unknown 1.4016677952618 152.20310886718 0.57
31 197751 7.3058344972996 1 VISp Narrow Interneuron Unknown 12.606763050503 97.18214398292 0.13
32 100488 3.7125967528888 1 VISp Wide Interneuron Unknown 0.9652893877876 160.22145282604 0.71
33 29394 1.0859880229088 1 VISp Pyramidal Cell Unknown 0.95257535551473 117.63779915334 0.69
34 196009 7.2415529053547 1 VISp Wide Interneuron Unknown 0.33671923228015 317.86250093808 0.57
35 249379 9.2132021289964 1 VISp Wide Interneuron Unknown 1.3353169272473 221.08743989307 0.51
36 67682 2.5006304363771 1 VISp Wide Interneuron Unknown 0.67964894654413 128.00429405602 0.69
37 185626 6.8579056205021 1 VISp Narrow Interneuron Unknown 2.5265857153631 83.58107564433 0.34
38 32512 1.2011582960973 1 VISp Pyramidal Cell Unknown 0.73818897637795 135.35577858058 0.7
39 45155 1.6683007183591 1 VISp Pyramidal Cell Unknown 0.62008636917285 136.43483353722 0.72
40 75964 2.806604577825 1 VISp Narrow Interneuron Unknown 0.40808804170397 96.558597085389 0.37
41 12559 0.49413063670283 1 VISp Wide Interneuron Unknown 0.079624173899196 263.48950371753 0.62
42 28788 1.0636727129755 1 VISp Pyramidal Cell Unknown 0.59052382937335 200.50920998531 0.64
43 12511 0.46227454855303 1 VISp Pyramidal Cell Unknown 0.31971864759012 156.67915164627 0.73
44 26264 0.97039574348602 1 VISp Pyramidal Cell Unknown 0 166.84283142391 0.45
45 11898 0.43999752088134 1 VISp Pyramidal Cell Unknown 0.084047739115818 181.35487345316 0.62
46 17636 0.6520827909247 1 VISp Pyramidal Cell Unknown 0.62372420049898 150.87500698365 0.64
47 18621 0.68801818401652 1 VISp Narrow Interneuron Unknown 0.10740561731379 213.24603929047 0.22
48 334729 12.366391551901 1 VISp Wide Interneuron Unknown 0.026887422362568 317.41439988697 0.55
49 240905 8.9002014871064 1 VISp Wide Interneuron Unknown 2.2041883730101 201.11012742434 0.54
50 597498 22.074287548645 1 VISp Narrow Interneuron Unknown 1.111300790965 215.5941501143 0.22
51 263242 9.7254651610145 1 VISp Pyramidal Cell Unknown 0.32669558809005 184.77953851359 0.49