Details for YMV18_180208

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  • Date & time: 2018-02-08,

  • Location: Alexandria

  • Animal subject: YMV18

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:45:10 by Yuta Senzai
    Updated: 2020-06-27 18:42:24 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV18_180208 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 28600.236

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 572004720 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 119 22918

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 17812 0.62317145102682 1 VISp Pyramidal Cell Unknown 0 270.94742951359 0.57
2 669687 23.427827732654 1 VISp Narrow Interneuron Unknown 0.2657958120734 350.69632973056 0.22
3 269776 9.4376526714606 1 VISp Wide Interneuron Unknown 0.055601684360358 440.63510179545 0.6
4 258379 9.0390379729835 1 VISp Pyramidal Cell Unknown 0.17803304448117 280.20899993525 0.54
5 1055153 36.912620672839 1 VISp Narrow Interneuron Unknown 4.6476672103477 281.59532090936 0.25
6 148607 5.1989691993235 1 VISp Pyramidal Cell Unknown 4.7911605779001 83.489615899895 0.61
7 14456 0.50628561417533 1 VISp Pyramidal Cell Unknown 0.069175428887659 284.3905492103 0.61
8 21342 0.74833990092004 1 VISp Narrow Interneuron Unknown 0.9839752600506 256.76894251009 0.36
9 49508 1.7320905612711 1 VISp Pyramidal Cell Unknown 0.10099377878323 224.581074367 0.66
10 61104 2.1378678935107 1 VISp Pyramidal Cell Unknown 0.96556690233045 114.55852240618 0.58
11 30204 1.0567157988784 1 VISp Pyramidal Cell Unknown 0.96013773010197 78.202061141319 0.63
12 171223 5.9899846741185 1 VISp Pyramidal Cell Unknown 7.3997068150891 243.1767485604 0.46
13 105997 3.7108676573771 1 VISp Narrow Interneuron Unknown 7.122843099333 196.84735449862 0.17
14 39653 1.3875180360418 1 VISp Narrow Interneuron Unknown 0.70612563992636 193.20982414266 0.13
15 13894 0.48609587967636 1 VISp Wide Interneuron Unknown 0.21592054124082 121.21717364725 0.7
16 23294 0.81494884733595 1 VISp Pyramidal Cell Unknown 0.81566068515498 131.94722073255 0.66
17 26064 0.91187316322907 1 VISp Pyramidal Cell Unknown 1.573050951504 107.33684553194 0.66
18 22187 0.7762050658427 1 VISp Pyramidal Cell Unknown 0.81128588813269 163.14064827393 0.6
19 142938 5.0004510841511 1 VISp Wide Interneuron Unknown 0.48272677664442 90.790157797616 0.7
20 21180 0.74136626479948 1 VISp Pyramidal Cell Unknown 0.33050047214353 156.66175584006 0.66
21 119181 4.1694055856759 1 VISp Pyramidal Cell Unknown 3.7589884293637 83.100482275156 0.61
22 80497 2.8163430465861 1 VISp Pyramidal Cell Unknown 1.7888865423556 222.13381754108 0.68
23 161383 5.6501984422005 1 VISp Narrow Interneuron Unknown 16.315225271559 107.54511507716 0.15
24 42657 1.4948804418754 1 VISp Narrow Interneuron Unknown 2.5318236162881 211.22319426023 0.4
25 32985 1.1542397428556 1 VISp Pyramidal Cell Unknown 1.2733060482037 141.01441915135 0.69
26 75660 2.6475139966045 1 VISp Narrow Interneuron Unknown 6.9257203277822 116.85280270455 0.13
27 420954 14.726229952372 1 VISp Pyramidal Cell Unknown 2.1878875126498 141.43342690978 0.57
28 128779 4.5051375321455 1 VISp Wide Interneuron Unknown 0.14753958331716 230.82383010165 0.52
29 5299 0.1854425544041 1 VISp Pyramidal Cell Unknown 0.18871485185884 244.7405486912 0.7
30 65483 2.2909938820426 1 VISp Narrow Interneuron Unknown 1.1147931524212 96.397529232041 0.36
31 159401 5.6306470991533 1 VISp Narrow Interneuron Unknown 4.2095093506314 100.28284793479 0.16
32 102221 3.5760721059083 1 VISp Wide Interneuron Unknown 1.8880660529637 119.15425912982 0.67
33 107480 3.7603084445131 1 VISp Wide Interneuron Unknown 3.7774469668776 199.64187074056 0.68
34 36556 1.2793676107878 1 VISp Pyramidal Cell Unknown 11.598643177591 142.17743849385 0.76
35 18611 0.65107875582932 1 VISp Pyramidal Cell Unknown 0.26865832034818 207.81415203301 0.64
36 48371 1.692670939718 1 VISp Wide Interneuron Unknown 1.6125364371214 120.54748666698 0.62
37 52177 1.8259725052502 1 VISp Wide Interneuron Unknown 1.5332426164785 111.71755291219 0.69
38 26218 0.91740818331564 1 VISp Wide Interneuron Unknown 0.45770081623312 116.3278398244 0.63
39 31065 1.0868134458167 1 VISp Pyramidal Cell Unknown 0.38628681796234 146.21505493614 0.68
40 153320 5.3650367299348 1 VISp Narrow Interneuron Unknown 8.5963996869293 209.0674687708 0.14
41 29611 1.0363054083766 1 VISp Narrow Interneuron Unknown 0.20262740197899 309.86716938991 0.14
42 68585 2.3998457772361 1 VISp Pyramidal Cell Unknown 0.451993876212 70.763142601906 0.47
43 13561 0.47473535193237 1 VISp Pyramidal Cell Unknown 0.73740874566772 164.47068097061 0.59
44 64908 2.2710174445755 1 VISp Narrow Interneuron Unknown 0.7703210698219 87.454063004613 0.34
45 37657 1.3177066050853 1 VISp Pyramidal Cell Unknown 1.9916615768649 128.68247577168 0.69
46 15995 0.55967779900217 1 VISp Wide Interneuron Unknown 0.062519537355424 81.672972628819 0.72
47 44762 1.5662134127673 1 VISp Wide Interneuron Unknown 0.13404226799517 144.87440601247 0.57
48 15803 0.55290394173418 1 VISp Pyramidal Cell Unknown 0.94918686325381 119.72316319426 0.67
49 128321 4.4891609638654 1 VISp Pyramidal Cell Unknown 3.1015967768331 113.81288359739 0.73
50 68554 2.3984207801746 1 VISp Pyramidal Cell Unknown 3.7342824634595 112.1192782334 0.59
51 36800 1.2876935524349 1 VISp Pyramidal Cell Unknown 0.57065217391304 153.25839491173 0.57
52 49944 1.7472320707175 1 VISp Wide Interneuron Unknown 0.66074002883229 84.149816265533 0.67
53 161938 5.6651813322784 1 VISp Narrow Interneuron Unknown 1.79080882807 71.144490043707 0.24
54 101036 3.5347593885968 1 VISp Wide Interneuron Unknown 0.55425788827745 118.62052095588 0.51
55 12957 0.45391941681084 1 VISp Pyramidal Cell Unknown 1.3120321061974 109.44418401763 0.74
56 117827 4.1220545866071 1 VISp Narrow Interneuron Unknown 1.3070009420591 97.034563308943 0.34
57 49732 1.7398135342286 1 VISp Wide Interneuron Unknown 1.4879755489423 139.18446564042 0.66
58 151988 5.3171425314722 1 VISp Pyramidal Cell Unknown 0.078953601600126 159.83068211432 0.71
59 34284 1.1994566507553 1 VISp Narrow Interneuron Unknown 0.40835375102088 147.9007282915 0.2
60 36084 1.2626921354279 1 VISp Pyramidal Cell Unknown 0.16627868307283 370.36637445458 0.63
61 197989 6.9265221900913 1 VISp Narrow Interneuron Unknown 1.9597048320866 119.06617731114 0.32
62 6294 0.22029836753782 1 VISp Wide Interneuron Unknown 0.63552589768033 116.82030125189 0.63
63 17168 0.60070098705113 1 VISp Pyramidal Cell Unknown 0.5242311276794 156.42020832909 0.61
64 90230 3.1566796664167 1 VISp Pyramidal Cell Unknown 0.16624182644353 178.67094363067 0.66
65 87670 3.0671645842947 1 VISp Wide Interneuron Unknown 0.1482833352344 68.590263751375 0.47
66 56150 1.9646495583992 1 VISp Narrow Interneuron Unknown 0.40961709706144 73.153812471719 0.36
67 122931 4.3005751982158 1 VISp Wide Interneuron Unknown 4.2625537903377 149.02499237729 0.64
68 124200 4.3452726954424 1 VISp Narrow Interneuron Unknown 3.1803542673108 116.32372465324 0.23
69 87936 3.07646178312 1 VISp Pyramidal Cell Unknown 2.9566957787482 195.64720003478 0.46
70 269561 9.4307632072383 1 VISp Narrow Interneuron Unknown 2.2555191589288 225.24561979292 0.31
71 56964 1.9928473070381 1 VISp Pyramidal Cell Unknown 0.91285724317113 183.1048908833 0.6
72 34233 1.1978439753199 1 VISp Wide Interneuron Unknown 0.73028948675255 124.95506857643 0.58
73 71097 2.4872610955973 1 VISp Wide Interneuron Unknown 0.21097936621798 199.89646362016 0.55
74 43784 1.5317774319695 1 VISp Wide Interneuron Unknown 0.045678786771423 266.88105369128 0.65
75 17261 0.61202955236515 1 VISp Narrow Interneuron Unknown 0.057934071027171 213.9237504423 0.29
76 150575 5.2980650679975 1 VISp Narrow Interneuron Unknown 0.90984559189773 104.63672945114 0.33
77 30412 1.0641224822612 1 VISp Pyramidal Cell Unknown 0.72339865842431 87.621062307608 0.69
78 332947 11.647677457901 1 VISp Narrow Interneuron Unknown 0.072083544828456 86.758342686642 0.25
79 226539 7.9250987196725 1 VISp Narrow Interneuron Unknown 2.692693090373 159.96800967093 0.31
80 5723 0.20032499413718 1 VISp Pyramidal Cell Unknown 0 321.59473928154 0.61
81 86970 3.0432512451681 1 VISp Narrow Interneuron Unknown 7.3013682879154 181.21018012126 0.16
82 147865 5.1729417019686 1 VISp Wide Interneuron Unknown 0.83860277956244 113.72793910797 0.53
83 68202 2.3863765547688 1 VISp Wide Interneuron Unknown 1.4222456819448 133.58602050206 0.57
84 22796 0.79751003764217 1 VISp Pyramidal Cell Unknown 0.48254079663099 129.32484921193 0.6
85 46387 1.622770639815 1 VISp Wide Interneuron Unknown 0.66829068489016 153.51712180369 0.65
86 89605 3.1348003508611 1 VISp Wide Interneuron Unknown 0.36828301992076 113.71359933804 0.55
87 8615 0.30192555043726 1 VISp Pyramidal Cell Unknown 0 175.42572411095 0.65
88 20487 0.71684488737335 1 VISp Pyramidal Cell Unknown 0.63454873822424 178.63252236973 0.68
89 85691 2.9981172715017 1 VISp Wide Interneuron Unknown 1.9838722853042 77.832663515786 0.61
90 122052 4.269797913374 1 VISp Wide Interneuron Unknown 0.55713957985121 206.40168416508 0.63
91 34173 1.1958299328483 1 VISp Wide Interneuron Unknown 0.35115442015626 122.55964630637 0.73
92 15452 0.54059678218267 1 VISp Pyramidal Cell Unknown 0.90603158167228 91.765583463441 0.66
93 12709 0.44476914485713 1 VISp Pyramidal Cell Unknown 0.86552836572508 142.72615382835 0.6
94 57345 2.006114898486 1 VISp Pyramidal Cell Unknown 0.81960066265585 155.90149643443 0.58
95 57850 2.0263182842335 1 VISp Narrow Interneuron Unknown 2.333621434745 174.58742974887 0.34
96 790355 27.649306724214 1 VISp Narrow Interneuron Unknown 2.3419855634493 273.90663866562 0.21
97 85445 2.9892419736977 1 VISp Pyramidal Cell Unknown 0.50324770320089 192.59115504666 0.69
98 8444 0.31205749144111 1 VISp Narrow Interneuron Unknown 13.027001421127 236.01636507135 0.33
99 392423 13.728264014167 1 VISp Wide Interneuron Unknown 1.1339804241851 174.00872215031 0.54
100 303325 10.611273532095 1 VISp Narrow Interneuron Unknown 0.77804335283936 108.8137773649 0.33
101 40088 1.4165370774463 1 VISp Wide Interneuron Unknown 2.5194571941728 111.99130861875 0.47
102 374290 13.093878117492 1 VISp Wide Interneuron Unknown 0.44083464693152 219.09888077367 0.55
103 226500 7.9237014230991 1 VISp Wide Interneuron Unknown 0.15452538631347 220.43278969213 0.58
104 37191 1.3014884414066 1 VISp Pyramidal Cell Unknown 0.02688822564599 114.7475011431 0.65
105 136987 4.7937066921532 1 VISp Wide Interneuron Unknown 0.75919612809975 154.1468429879 0.81
106 336768 11.781243870604 1 VISp Narrow Interneuron Unknown 1.131342645382 92.613604526289 0.25
107 102906 3.6002525781536 1 VISp Pyramidal Cell Unknown 6.5399490797427 101.95238732506 0.56
108 31885 1.1155252093592 1 VISp Pyramidal Cell Unknown 1.4113219382155 152.0650718846 0.59
109 279521 9.7799345728147 1 VISp Narrow Interneuron Unknown 0.12879175446568 123.36776260641 0.25
110 37449 1.3414045009463 1 VISp Pyramidal Cell Unknown 0 310.37865799729 0.56
111 37180 1.3007504625217 1 VISp Wide Interneuron Unknown 0.56481979558903 131.89969553574 0.61
112 150907 5.2795933954245 1 VISp Wide Interneuron Unknown 0.21867772866732 170.18942991348 0.44
113 9573 0.33596615617394 1 VISp Pyramidal Cell Unknown 0 118.65397546276 0.62
114 70806 2.4773035249126 1 VISp Pyramidal Cell Unknown 0 495.48319771298 0.62
115 37904 1.3262744628427 1 VISp Pyramidal Cell Unknown 0.58041367665682 204.9084208064 0.55
116 42247 1.4783375978062 1 VISp Pyramidal Cell Unknown 0.37872511657632 267.35644643689 0.65
117 70096 2.4523179990468 1 VISp Pyramidal Cell Unknown 0.042798447842958 297.03489123855 0.58
118 4897 0.17141764778533 1 VISp Pyramidal Cell Unknown 0 355.10936417169 0.7
119 125312 4.3841009992306 1 VISp Wide Interneuron Unknown 6.5596271705822 136.75969404163 0.58