Details for YMV19_180209

Back to list of sessions

  • Date & time: 2018-02-09,

  • Location: Alexandria

  • Animal subject: YMV19

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:45:35 by Yuta Senzai
    Updated: 2020-06-27 18:42:27 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV19_180209 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 23676.876

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 473537520 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 64 22928

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 7876 0.33287986271081 1 VISp Pyramidal Cell Unknown 0.38090401218893 111.82215777064 0.66
2 20890 0.88303176702978 1 VISp Wide Interneuron Unknown 0.38295835327908 138.76213758447 0.69
3 180912 7.6457711100398 1 VISp Narrow Interneuron Unknown 2.0838860882639 104.34086661921 0.34
4 701546 29.648927835216 1 VISp Narrow Interneuron Unknown 4.3290104996679 123.36800304727 0.27
5 23322 0.98571223179996 1 VISp Pyramidal Cell Unknown 0.12863390789812 306.51707682495 0.66
6 124708 5.2705342452559 1 VISp Narrow Interneuron Unknown 4.1376655868108 113.49151424123 0.25
7 85816 3.6268731819369 1 VISp Wide Interneuron Unknown 0.046611354525963 226.47321901026 0.52
8 169079 7.1456775063343 1 VISp Wide Interneuron Unknown 0.23066140679801 185.80825894506 0.56
9 60942 2.5755927349461 1 VISp Wide Interneuron Unknown 0.37740802730465 152.22736535716 0.51
10 198496 8.389108097085 1 VISp Wide Interneuron Unknown 0.54912945349025 228.76494469235 0.57
11 510070 21.556629228426 1 VISp Narrow Interneuron Unknown 37.251749759837 118.60988843705 0.26
12 44763 1.8918407033781 1 VISp Wide Interneuron Unknown 0.33509818376784 230.17126784219 0.47
13 140633 5.9437232829516 1 VISp Narrow Interneuron Unknown 0.9670560963643 140.57180988351 0.27
14 282318 11.931793897019 1 VISp Narrow Interneuron Unknown 4.4630523027225 133.86069435468 0.35
15 59688 2.5225712501809 1 VISp Narrow Interneuron Unknown 2.1612384398874 83.485414729703 0.31
16 37432 1.5820079042367 1 VISp Wide Interneuron Unknown 0.77473819192135 99.544666155495 0.67
17 42565 1.8006275503228 1 VISp Pyramidal Cell Unknown 0 258.35676069646 0.55
18 380612 16.085548278575 1 VISp Narrow Interneuron Unknown 6.2005401826532 114.93404188363 0.23
19 82220 3.474983007948 1 VISp Pyramidal Cell Unknown 0.76623692532231 124.50843614377 0.67
20 31742 1.3415841505277 1 VISp Wide Interneuron Unknown 0.18902400604877 146.60553632491 0.68
21 34921 1.476013799387 1 VISp Pyramidal Cell Unknown 0.11454425703731 136.27977924383 0.64
22 41778 1.7657135179309 1 VISp Wide Interneuron Unknown 0.26329647182728 81.193567380301 0.55
23 182270 7.7031479539384 1 VISp Narrow Interneuron Unknown 11.488451198771 122.36384683855 0.12
24 127510 5.3888515008231 1 VISp Narrow Interneuron Unknown 1.3410712885264 76.711677043601 0.33
25 123683 5.2273822635143 1 VISp Narrow Interneuron Unknown 1.0268185603519 134.99041293608 0.24
26 89381 3.7776119055504 1 VISp Wide Interneuron Unknown 0.044752240409035 234.86203815268 0.62
27 45030 1.9032172401812 1 VISp Pyramidal Cell Unknown 0.088829669109483 179.79477255568 0.49
28 15569 0.65807620995917 1 VISp Pyramidal Cell Unknown 0.25692080416212 164.83050524941 0.6
29 68043 2.8759220938686 1 VISp Pyramidal Cell Unknown 2.3514542274738 110.70359868199 0.63
30 30871 1.3047246369377 1 VISp Pyramidal Cell Unknown 1.6520358912896 167.73509642259 0.59
31 46725 1.9750736741052 1 VISp Wide Interneuron Unknown 1.091492776886 116.58160550354 0.61
32 91848 3.8817705532794 1 VISp Narrow Interneuron Unknown 0.96899224806202 100.03506108761 0.32
33 63340 2.6770770447135 1 VISp Pyramidal Cell Unknown 1.7682349226397 133.11563665511 0.62
34 19398 0.8200617872886 1 VISp Narrow Interneuron Unknown 5.5160325806784 121.9026079192 0.11
35 61144 2.5840904170465 1 VISp Wide Interneuron Unknown 0.75232238649745 143.83306150135 0.61
36 234466 9.9092124712071 1 VISp Pyramidal Cell Unknown 19.53374902971 143.89854037339 0.57
37 30440 1.2867071685787 1 VISp Pyramidal Cell Unknown 1.1169513797635 142.69225913706 0.66
38 31067 1.3131640682306 1 VISp Narrow Interneuron Unknown 4.5385779122542 116.11243656209 0.13
39 308298 13.029342915092 1 VISp Narrow Interneuron Unknown 1.5926149374955 115.47067166279 0.32
40 5627 0.23782254428982 1 VISp Wide Interneuron Unknown 1.421716722943 68.554303735822 0.67
41 58071 2.4543220369743 1 VISp Wide Interneuron Unknown 0.37884658435364 211.86236660069 0.57
42 95552 4.0382849120987 1 VISp Pyramidal Cell Unknown 2.13496316142 165.39706923849 0.59
43 24714 1.0451021941556 1 VISp Wide Interneuron Unknown 0.20231447762402 200.35187917726 0.72
44 54997 2.3244000442725 1 VISp Pyramidal Cell Unknown 0.090914049857265 203.35604522018 0.71
45 150426 6.3573736310337 1 VISp Wide Interneuron Unknown 0.52517516918618 148.30001551617 0.58
46 154341 6.5229992091137 1 VISp Wide Interneuron Unknown 1.5614775075968 144.32495260846 0.55
47 16966 0.71706147766899 1 VISp Pyramidal Cell Unknown 0.76623835907108 145.22992536635 0.73
48 96388 4.0737384872817 1 VISp Wide Interneuron Unknown 0.51873677221231 139.62138580156 0.54
49 34506 1.4583679380146 1 VISp Pyramidal Cell Unknown 1.6518866284125 121.01183384117 0.64
50 41353 1.7477494698406 1 VISp Wide Interneuron Unknown 1.4267405025028 85.09625460169 0.64
51 66778 2.822434053975 1 VISp Pyramidal Cell Unknown 0.37437479409386 99.470669752592 0.76
52 18906 0.79905035321081 1 VISp Pyramidal Cell Unknown 0.95207870517296 95.219188504483 0.67
53 162628 6.8730234756238 1 VISp Wide Interneuron Unknown 0.45502619475121 277.35580778418 0.52
54 138244 5.8427608222363 1 VISp Wide Interneuron Unknown 0.63655565521831 147.12994710105 0.52
55 84907 3.5883992424504 1 VISp Pyramidal Cell Unknown 0.63598996549166 156.57394299223 0.61
56 33993 1.4368163284756 1 VISp Pyramidal Cell Unknown 0.82369899685229 158.42644450166 0.7
57 27699 1.1714757914014 1 VISp Pyramidal Cell Unknown 0.10830715910322 135.79290083818 0.71
58 140246 5.9271191003395 1 VISp Wide Interneuron Unknown 0.07843360951471 248.15664813864 0.62
59 40494 1.7115762047034 1 VISp Wide Interneuron Unknown 0.34573023163926 113.49880360321 0.69
60 49848 2.1071028482848 1 VISp Narrow Interneuron Unknown 0.020060985395603 482.2074628983 0.24
61 4105 0.1736298158524 1 VISp Narrow Interneuron Unknown 0.73081607795371 145.68453315161 0.13
62 1236 0.052283194962678 1 VISp Pyramidal Cell Unknown 0 434.22235924657 0.67
63 46133 1.949713296251 1 VISp Pyramidal Cell Unknown 0.021676457199835 430.01011906312 0.66
64 108653 4.5919221195673 1 VISp Pyramidal Cell Unknown 0.046018057485757 574.13411025076 0.61