Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	495184000	166	20	0.3815

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Implanted probes

Rat08 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat08 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat08 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	17, 20, 19, 18, 21, 29, 25, 27
2	22, 23, 26, 31, 28, 24, 30, 32
3	9, 12, 1, 8, 10, 6, 2, 4
4	14, 15, 16, 13, 3, 11, 5, 7
5	66, 71, 65, 72, 68, 69, 67, 70
6	74, 79, 73, 80, 76, 77, 75, 78
7	49, 58, 50, 57, 51, 55, 53, 54
8	59, 52, 61, 56, 62, 60, 63, 64
9	46, 37, 42, 35, 38, 36, 34, 33
10	40, 47, 39, 48, 41, 45, 44, 43
11	81, 88, 82, 87, 83, 86, 84, 85
12	89, 96, 90, 95, 91, 94, 92, 93
13	130, 135, 129, 136, 132, 133, 131, 134
14	138, 143, 137, 144, 140, 141, 139, 142
15	113, 122, 114, 121, 115, 119, 117, 118
16	123, 116, 125, 120, 126, 124, 127, 128
17	110, 101, 106, 99, 102, 100, 98, 97
18	104, 111, 103, 112, 105, 109, 108, 107
19	145, 152, 146, 151, 147, 150, 148, 149
20	153, 160, 154, 159, 155, 158, 156, 157

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
		1	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,9,10,11,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		12,20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik					Yes	166	23218

---

#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	21562	0.87102139783717	20		Pyramidal Cell	Deep	0.64929041832854	49.212970217111	0.72	23.86223925209
2	123466	4.9866934637188	20		Wide Interneuron	Deep	1.0124244731343	34.069694221101	0.53	140.48492841292
3	118037	4.7674273203308	20		Wide Interneuron	Deep	1.4995298084499	31.701404460731	0.35	144.14377773591
4	1867	0.07590378333972	20		Wide Interneuron	Deep	0	79.433404262855	0.6	68.947612753141
5	2489	0.10160946639185	20		Pyramidal Cell	Deep	0	70.813232825656	0.73	26.968366730334
6	180905	7.3066146195901	19		Wide Interneuron	Deep	3.3553522567093	27.571467732378	0.51	0
7	2958	0.11974750837082	19		Wide Interneuron	Deep	0	39.237428932717	0.71	26.287281880934
8	1063	0.043182806330582	19		Wide Interneuron	Deep	0	49.942321937871	0.65	27.197257175797
9	6835	0.27698684334377	19		Wide Interneuron	Deep	0	55.426648175681	0.74	61.540007463545
10	5356	0.21636561037482	19		Wide Interneuron	Deep	0.18670649738611	31.143398716757	0.73	34.473997944351
11	1661	0.067514931556128	19		Pyramidal Cell	Deep	0	48.105964178248	0.66	22.092497021208
12	4120	0.16653562293784	19		Pyramidal Cell	Deep	0	55.061727766774	0.64	56.722261658945
13	7002	0.28317807919217	19		Wide Interneuron	Deep	0	63.720614473084	0.73	61.245741692789
14	20913	0.84469321096401	19		Wide Interneuron	Deep	0.28690288337398	36.619612284494	0.59	65.31692038928
15	11295	0.45660787730086	19		Wide Interneuron	Deep	0	40.979030862219	0.63	44.248965492307
16	21650	0.87481910210786	19		Pyramidal Cell	Deep	0.046189376443418	47.231866828185	0.6	61.523637521023
17	55975	2.2608330364564	19		Wide Interneuron	Deep	0.89325591782046	35.425272838242	0.45	35.091322282377
18	21298	0.86043654933917	18		Pyramidal Cell	Deep	0.093905531035778	100.97685361072	0.71	74.635909561056
19	18015	0.72851050362016	18		Pyramidal Cell	Deep	0.16652789342215	66.59602396975	0.61	59.847469077744
20	9428	0.38226549695425	18		Pyramidal Cell	Deep	0.10606703436572	34.63122388515	0.66	61.86454079441
21	2323	0.094083299924075	18		Wide Interneuron	Deep	0	39.674192559031	0.72	47.36003480447
22	4680	0.18902569789822	18		Wide Interneuron	Deep	0	41.435735824366	0.69	58.618093579373
23	16985	0.68657887836428	18		Pyramidal Cell	Deep	0.41212834854283	33.840088821885	0.69	79.804410163417
24	20878	0.84425655797855	18		Wide Interneuron	Deep	0	25.575096524926	0.66	101.69647258034
25	5670	0.23093343459215	18		Pyramidal Cell	Deep	0	54.986454110223	0.69	54.469908055711
26	1561	0.063769638671648	18		Wide Interneuron	Deep	0	48.530158871986	0.7	57.850945136316
27	2811	0.11542289227267	18		Wide Interneuron	Deep	0	53.411918302482	0.61	23.664253711209
28	4674	0.18907608356069	17		Pyramidal Cell	Superficial	0.6418485237484	38.268729699947	0.68	97.743060160991
29	1062	0.046687248988034	17		Pyramidal Cell	Superficial	0	113.63184060864	0.65	116.92250170489
30	5387	0.21843667495247	17		Pyramidal Cell	Superficial	0.18563207722294	30.812010544713	0.63	209.25138970556
31	12452	0.50360451840105	16		Pyramidal Cell	Deep	0	22.085620889588	0.64	0
32	6074	0.24541858572162	15		Wide Interneuron	Deep	0.16463615409944	50.041638411993	0.65	51.724273497105
33	3133	0.12700698887272	15		Pyramidal Cell	Deep	0.638365783594	43.370044330638	0.69	40.538817189152
34	5550	0.22418623547249	15		Wide Interneuron	Deep	0	32.1622619612	0.62	47.210534647879
35	7136	0.28851597090042	15		Wide Interneuron	Deep	0	31.862075715358	0.55	67.718684510763
36	1994	0.084297188792117	15		Pyramidal Cell	Deep	0	87.085886721838	0.58	67.464990828817
37	9596	0.38878258759312	15		Pyramidal Cell	Deep	0.10421008753647	37.504600531014	0.64	100.21689062724
38	5838	0.2362908863449	15		Pyramidal Cell	Deep	0	36.458981495871	0.53	41.651682043442
39	4398	0.17877024230788	15		Pyramidal Cell	Deep	0	91.933793809525	0.62	46.357285833699
40	4066	0.16425504230258	15		Pyramidal Cell	Deep	0	43.336142799762	0.61	48.202079786098
41	8220	0.3326218550505	15		Pyramidal Cell	Deep	0	59.365767226656	0.68	59.743758940695
42	21207	0.85678628043364	14		Wide Interneuron	Deep	0.5658508982883	37.973976449505	0.65	51.458585404928
43	29979	1.2110347626117	14		Wide Interneuron	Deep	0.30021014710297	51.116616490708	0.67	50.033648464671
44	29050	1.1733885075555	14		Pyramidal Cell	Deep	0.75731497418244	23.556177590612	0.67	40.71410362808
45	8917	0.36105698040152	14		Wide Interneuron	Deep	0	58.687800929944	0.53	44.522436438788
46	6396	0.25862252805527	14		Pyramidal Cell	Deep	0	57.440181972198	0.57	40.481297921317
47	17081	0.69611545163405	14		Pyramidal Cell	Deep	0	56.310568973599	0.47	46.973204555397
48	15051	0.60810826494343	14		Wide Interneuron	Deep	0.13288153611056	42.504063319577	0.72	42.053921072853
49	6282	0.25443798967694	14		Wide Interneuron	Deep	0	55.443573223588	0.72	82.449425931995
50	473	0.019661623092467	14		Pyramidal Cell	Deep	0	162.46636750026	0.7	21.33034067341
51	3257	0.13228680001632	14		Wide Interneuron	Deep	0	42.670728998744	0.71	26.374031408663
52	2806	0.11349501654344	14		Wide Interneuron	Deep	0	39.520051530543	0.68	39.928183718816
53	9070	0.36636352421094	14		Wide Interneuron	Deep	0	19.941145124494	0.48	43.525706176812
54	7213	0.29138770021048	14		Pyramidal Cell	Deep	0	48.48220560715	0.53	37.185702914852
55	2404	0.097715842589891	14		Pyramidal Cell	Deep	0	48.681888440157	0.75	43.68900755183
56	6582	0.27028807127701	13		Pyramidal Cell	Deep	0	59.271776977324	0.54	47.646198657419
57	20001	0.80796492558857	13		Pyramidal Cell	Deep	0.14999250037498	47.156782331451	0.7	41.064050355923
58	14546	0.58790197246689	13		Wide Interneuron	Deep	0	37.073466116782	0.67	33.965478747558
59	2124	0.086196985353777	13		Pyramidal Cell	Deep	0	40.230004618116	0.72	56.351586242229
60	3020	0.1229905838124	13		Pyramidal Cell	Deep	0	49.726644980351	0.56	57.126467683066
61	16890	0.68221788736282	13		Wide Interneuron	Deep	0.29603315571344	25.852844798726	0.59	52.748120870283
62	12702	0.51376291657488	13		Pyramidal Cell	Deep	0	39.14483731413	0.59	63.250831667741
63	21311	0.8607716167856	13		Narrow Interneuron	Deep	0.32846886584393	33.356398727298	0.2	134.94843117693
64	24431	0.9868721445071	13		Pyramidal Cell	Deep	0.1637264131636	32.401894904753	0.69	59.948582237631
65	423230	17.093862579966	12		Wide Interneuron	Deep	0.1961108617064	81.492098334286	0.43	0
66	3325	0.13666281040522	12		Pyramidal Cell	Deep	0	52.328114731654	0.65	74.400875702766
67	63161	2.551358274317	12		Narrow Interneuron	Deep	0.41164642738399	40.26524399042	0.37	63.601817793141
68	9891	0.39977944995113	12		Pyramidal Cell	Deep	0	24.95787017337	0.6	37.978308662866
69	167776	6.7763681463296	11		Wide Interneuron	Superficial	0.10132557695976	78.002036444216	0.48	99.607157693237
70	148454	5.9964203445907	11		Wide Interneuron	Superficial	0.16166624004742	61.085774301692	0.64	54.606032582049
71	21427	0.86652426004153	11		Pyramidal Cell	Superficial	0	117.66429894424	0.72	75.818042093307
72	23754	0.95985702276245	11		Wide Interneuron	Superficial	0.042098172939294	48.669953085508	0.73	28.483160107444
73	117619	4.7505760182979	11		Wide Interneuron	Superficial	1.0202433280337	22.41861879289	0.54	105.25368602722
74	8482	0.34455162889646	11		Pyramidal Cell	Superficial	0.47158688988446	57.714448578941	0.71	70.753438680058
75	5699	0.23027043173247	11		Pyramidal Cell	Superficial	0.17546938059309	25.330195394248	0.7	27.215683134093
76	8387	0.33893998546236	11		Pyramidal Cell	Superficial	0	44.937579909984	0.68	24.774008081214
77	59382	2.3984152284172	11		Wide Interneuron	Superficial	0.50520359704961	24.70449796009	0.5	57.246272142592
78	4875	0.19825876020871	11		Pyramidal Cell	Superficial	0	54.95909003508	0.58	25.804060486533
79	3071	0.12411965577784	11		Pyramidal Cell	Superficial	0	40.709135374855	0.69	53.313872745975
80	27128	1.0957562118861	10		Pyramidal Cell	Deep	0.18431141256267	31.757567574387	0.71	56.407220916012
81	54120	2.1859342903588	10		Wide Interneuron	Deep	1.090169992609	41.608243389824	0.7	62.329547403079
82	62089	2.5101820368133	10		Wide Interneuron	Deep	0.19327094976566	73.689488845435	0.53	48.504517192704
83	14794	0.59795498948988	10		Pyramidal Cell	Deep	0	53.793029045804	0.65	51.132063236089
84	28777	1.162764269313	10		Pyramidal Cell	Deep	0.24324981756264	55.601027442923	0.52	51.18808028664
85	131692	5.318986153224	10		Wide Interneuron	Deep	1.0858670230538	33.099534083327	0.34	118.12564599743
86	15542	0.62821022137925	10		Pyramidal Cell	Deep	0.38605070132544	29.305887221013	0.65	43.843205797217
87	3610	0.14584696760075	10		Wide Interneuron	Deep	0	53.152579940875	0.55	27.749087555111
88	10702	0.43251631027917	10		Wide Interneuron	Deep	0.1868809568305	37.716297668281	0.71	26.967998716592
89	15391	0.62258074178689	10		Pyramidal Cell	Deep	0	50.481170702309	0.75	52.454250172313
90	47268	1.9092170908519	10		Wide Interneuron	Deep	0.48658712025049	40.104352540793	0.52	50.955665652843
91	18793	0.7590495555719	10		Wide Interneuron	Deep	0.31926781248337	27.325778409691	0.75	63.43298034255
92	2264	0.091737969284057	10		Pyramidal Cell	Deep	0.4416961130742	36.310363129539	0.71	30.332754925944
93	43425	1.7539149274439	9		Wide Interneuron	Deep	0.71387449625792	37.428102183139	0.74	114.11784160912
94	23542	0.95089397433429	9		Wide Interneuron	Deep	0	114.92677863355	0.62	130.66130182463
95	17155	0.69322214904047	9		Wide Interneuron	Deep	0.058292043136112	61.729392790225	0.65	69.288353437705
96	15953	0.64463753430188	9		Wide Interneuron	Deep	0.31342067322761	28.683968201106	0.72	56.999370956975
97	25648	1.035959931083	9		Wide Interneuron	Deep	0.42888334373051	46.117349302406	0.75	72.623549963046
98	16048	0.64826392634151	9		Pyramidal Cell	Deep	0.062313060817547	32.363289493746	0.48	62.703607386106
99	8749	0.35340477773045	9		Pyramidal Cell	Deep	0	66.478375465142	0.73	32.920363814144
100	15367	0.62069485090099	9		Wide Interneuron	Deep	0.13014902062862	40.397526356587	0.63	41.444279415551
101	10865	0.43883112545607	9		Pyramidal Cell	Deep	0	62.604710885022	0.6	99.331469033686
102	11762	0.47522205939588	9		Wide Interneuron	Deep	0.085019554497534	44.830341637455	0.7	51.289029701268
103	21353	0.86245248811929	8		Wide Interneuron	Superficial	0.28099096145741	92.902747375891	0.69	74.202993981552
104	94390	3.812360033522	8		Wide Interneuron	Superficial	0.87933043754635	22.134504814427	0.49	89.557412789441
105	135986	5.4923839781595	8		Narrow Interneuron	Superficial	1.0883473298722	32.486971521248	0.4	950.44122925186
106	3636	0.14708231584375	8		Pyramidal Cell	Superficial	0	72.347380357172	0.73	39.397677114815
107	8067	0.32593878617879	8		Wide Interneuron	Superficial	0	88.461093656344	0.66	71.187739677741
108	6465	0.26150287384276	8		Pyramidal Cell	Superficial	0.30935808197989	54.382103107727	0.67	39.049320600621
109	3084	0.12484785104311	8		Pyramidal Cell	Superficial	0.3242542153048	84.271024188143	0.58	25.928252740257
110	716	0.029089280918501	8		Wide Interneuron	Superficial	0	130.54522087357	0.74	51.901721550892
111	7297	0.29516045461506	8		Wide Interneuron	Superficial	0	63.895300512673	0.65	50.38937317036
112	1325	0.054553507241996	8		Pyramidal Cell	Superficial	0	60.665017582034	0.68	42.628042935051
113	21915	0.88524375729152	7		Wide Interneuron	Deep	0	88.463079804944	0.61	116.1945282086
114	3214	0.13176150629492	7		Wide Interneuron	Deep	0	35.344868645225	0.66	46.576775921857
115	18414	0.74443790695125	7		Wide Interneuron	Deep	0	87.566328871643	0.69	81.223856560377
116	40802	1.6479978663674	7		Pyramidal Cell	Deep	0	121.48809286378	0.65	141.2954819724
117	8309	0.3357322966267	7		Wide Interneuron	Deep	0	62.490254310712	0.67	75.3139733204
118	17540	0.70871912900892	7		Wide Interneuron	Deep	0.17103762827822	33.772759705864	0.5	201.29568526243
119	1146	0.049246045831507	7		Pyramidal Cell	Deep	0	89.612730170373	0.75	40.127486947936
120	6540	0.26463246630181	7		Wide Interneuron	Deep	0	48.973219725042	0.7	87.301269166046
121	2150	0.086972342966859	7		Wide Interneuron	Deep	0.46511627906977	43.34539976422	0.6	75.161381457449
122	15545	0.62824083688663	7		Pyramidal Cell	Deep	0.12865873271148	98.577108799385	0.67	119.83844467483
123	2244	0.090963641824256	7		Wide Interneuron	Deep	0	60.940470902438	0.75	62.401003326992
124	7515	0.30418872857992	7		Wide Interneuron	Deep	0	117.31885531285	0.67	93.57453682458
125	1679	0.069387498286234	7		Pyramidal Cell	Deep	0	59.844328817013	0.69	40.353448818135
126	7955	0.32151369309541	7		Pyramidal Cell	Deep	0.12570710245129	57.400596459126	0.73	30.246647779315
127	7348	0.29685733265457	7		Wide Interneuron	Deep	0	128.76289412855	0.67	78.97414961097
128	169722	6.8549377585186	6		Wide Interneuron	Superficial	2.8929661446365	29.835560350972	0.44	202.72566657474
129	18243	0.73848919436948	6		Pyramidal Cell	Superficial	0.3837088198213	60.348275732414	0.63	36.218276528452
130	44288	1.7888036715066	6		Wide Interneuron	Superficial	0	107.84474237608	0.71	50.101841784254
131	17417	0.70451763611572	6		Pyramidal Cell	Superficial	0.17224550726302	116.97187797377	0.73	33.695666852871
132	10567	0.42816487684908	6		Pyramidal Cell	Superficial	0	51.617417367287	0.75	42.481554336552
133	103792	4.1920821728884	6		Wide Interneuron	Superficial	1.6378911669493	35.983956202799	0.49	101.90785018994
134	3115	0.12586489334251	6		Narrow Interneuron	Superficial	0	27.555536424766	0.28	52.863116242903
135	19814	0.80033981037226	6		Pyramidal Cell	Superficial	0.70657111133542	38.278276269509	0.71	35.927419364528
136	10365	0.41908686636467	6		Wide Interneuron	Superficial	0.38591413410516	28.717788039689	0.6	24.791874773186
137	4637	0.18856512187879	6		Pyramidal Cell	Superficial	0.21565667457408	50.04557597775	0.68	36.012732353546
138	3877	0.15669809714432	6		Pyramidal Cell	Superficial	0	50.101940750905	0.66	25.656855008665
139	18103	0.73170122369522	6		Pyramidal Cell	Superficial	0.33143677843451	26.23523215393	0.69	39.212705063846
140	4679	0.18909624838802	6		Wide Interneuron	Superficial	0	27.853146581714	0.62	22.744449392202
141	43028	1.7378980220359	5		Wide Interneuron	Superficial	1.2085153853305	44.825616500174	0.63	34.0779144995
142	17702	0.71816459070702	5		Pyramidal Cell	Superficial	0	144.90594314561	0.75	32.622137617372
143	51517	2.094342522343	5		Wide Interneuron	Superficial	0.19411068191083	106.37923110862	0.66	36.664648370892
144	40566	1.6422815726492	5		Pyramidal Cell	Superficial	0.5176749001627	99.974672466754	0.62	52.448811670941
145	177029	7.1585456248902	5		Wide Interneuron	Superficial	0.65525987267623	62.198596331961	0.69	80.638308229947
146	153183	6.1869822828016	5		Wide Interneuron	Superficial	4.164953030036	29.743847021041	0.41	59.232441532706
147	89461	3.6132528602605	5		Narrow Interneuron	Superficial	1.6878863415343	33.878949274469	0.33	54.414966363214
148	6369	0.25809518495714	5		Pyramidal Cell	Superficial	0.31402103940964	36.381753109269	0.65	23.527197340358
149	11255	0.45926115179877	5		Pyramidal Cell	Superficial	0.79964460239893	48.040497521769	0.69	39.040725084022
150	8961	0.36202545521732	5		Pyramidal Cell	Superficial	0.55797344046423	50.650525414937	0.68	21.71883032297
151	6353	0.25895216021271	5		Pyramidal Cell	Superficial	0	84.989523565342	0.69	25.804810591627
152	11053	0.44686985566373	5		Narrow Interneuron	Superficial	0	35.582735257919	0.26	73.634019594247
153	3853	0.15684775435334	5		Pyramidal Cell	Superficial	0	35.158330754659	0.73	29.236138370291
154	29155	1.1787852583748	5		Pyramidal Cell	Superficial	0.54879094494941	49.64388113917	0.63	50.483993992323
155	5382	0.22006992985762	5		Pyramidal Cell	Superficial	0	44.990461669335	0.72	28.833010043826
156	47131	1.9038603905085	5		Wide Interneuron	Superficial	0.53043644310539	30.876542711271	0.6	59.608083033847
157	9439	0.38306310991927	5		Pyramidal Cell	Superficial	0.31783027863121	42.664287754584	0.72	39.646960293506
158	131669	5.3184656980391	4		Pyramidal Cell	Superficial	15.022518588278	105.57951231149	0.72	25.696393066907
159	138052	5.5759799987709	4		Pyramidal Cell	Superficial	9.0183409150175	34.484737147504	0.62	67.605459018662
160	80059	3.2337845144489	4		Pyramidal Cell	Deep	3.0477522826915	34.045639959675	0.73	30.001623697717
161	103801	4.1927811284416	4		Pyramidal Cell	Deep	5.3853045731737	90.191761395017	0.66	38.953379011941
162	11132	0.44986999203786	4		Pyramidal Cell	Deep	0.53898670499461	24.474464769446	0.72	28.173412479765
163	25491	1.029872221304	4		Pyramidal Cell	Deep	0.4707543839002	73.807645627069	0.67	25.821707982313
164	7787	0.31473511774066	4		Wide Interneuron	Superficial	0.12841916013869	45.069099679074	0.35	67.776600826437
165	18862	0.76219202198756	4		Pyramidal Cell	Superficial	0.053016647227229	45.856006961186	0.64	26.770989703343
166	17550	0.70889339134257	4		Pyramidal Cell	Deep	1.4814814814815	35.509968793897	0.74	42.491040913161