Details for Peter_MS13_171110_163224_concat

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  • Date & time: 2017-11-10, 16:32:24

  • Location: Alexandria

  • Animal subject: MS13

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: PeterSetup_DataDrive3

  • Created: 2019-05-15 17:43:22 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:43:52 by Peter Petersen

  • Notes:
    recordingID = 88

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS13_171110_163224 Homecage_Sleep Homecage Homecage_Rat 4402.152
Peter_MS13_171110_175357 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 7995.456
Peter_MS13_171110_185615 Homecage_Sleep Homecage Homecage_Rat 15852.204

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 317044000 128 8 0.195

Implanted probes

MS13 : #1 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS13 : #2 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 43, 41, 58, 52, 56, 50, 44, 39, 55, 54, 40, 51, 53, 42, 49, 38
2 46, 37, 34, 60, 48, 45, 18, 35, 64, 62, 33, 47, 61, 36, 57, 59
3 20, 27, 32, 6, 63, 19, 1, 29, 2, 4, 31, 17, 3, 30, 7, 5
4 21, 23, 8, 14, 10, 16, 22, 25, 9, 12, 26, 13, 11, 24, 15, 28
5 107, 105, 122, 116, 120, 114, 108, 103, 119, 118, 104, 115, 117, 106, 113, 102
6 110, 101, 98, 124, 112, 109, 82, 99, 128, 126, 97, 111, 125, 100, 121, 123
7 84, 91, 96, 70, 127, 83, 65, 93, 66, 68, 95, 81, 67, 94, 71, 69
8 85, 87, 72, 78, 74, 80, 86, 89, 73, 76, 90, 77, 75, 88, 79, 92
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2017-11-10 05.54.03 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171110_175407000.avi 2 Video
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 21 4
Ripple 21 4
Bad 26, 78, 82, 83, 86, 88, 90, 92, 96

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-07-08_204926 Peter Petersen Yes 54 34550

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 32072 2.0330154108711 7 CA1 Wide Interneuron Unknown 0.12471938139187 55.964222171656 0.17
2 14861 1.0422759204609 8 CA1 Wide Interneuron Unknown 0.067290222730637 146.59780382621 0.69
3 10421 0.6624313543908 4 CA1 Pyramidal Cell Unknown 0.57576048363881 247.81080500782 0.65
4 74768 4.7169312571871 5 CA1 Pyramidal Cell Unknown 18.24309865183 222.14168684271 0.73
5 15500 1.5813250127344 4 CA1 Pyramidal Cell Unknown 6.9677419354839 383.42637890869 0.7
6 50842 3.2073988019689 2 CA1 Pyramidal Cell Unknown 5.1335510011408 251.88091034087 0.63
7 37755 2.382180833079 2 CA1 Pyramidal Cell Unknown 7.0719110051649 293.53547515988 0.7
8 53791 3.3935725423132 4 CA1 Pyramidal Cell Unknown 7.008607387853 255.34277286853 0.72
9 54096 3.4125447424557 2 CA1 Wide Interneuron Unknown 0.036971310263236 351.9436540205 0.59
10 41007 2.58708240865 2 CA1 Pyramidal Cell Unknown 1.1217596995635 209.64511413902 0.73
11 28146 1.7765879434308 2 CA1 Pyramidal Cell Unknown 1.4922191430399 312.8013081003 0.69
12 33785 2.131541034452 2 CA1 Pyramidal Cell Unknown 3.5814710670416 209.73552015724 0.67
13 17182 1.0888804807977 1 CA1 Pyramidal Cell Unknown 4.3068327319288 245.99101913687 0.67
14 3927 0.5778003414672 1 CA1 Pyramidal Cell Unknown 8.4033613445378 520.8063991323 0.75
15 22314 1.4202367461588 1 CA1 Pyramidal Cell Unknown 1.7029667473335 231.2556817456 0.7
16 19300 2.9756421564898 1 CA1 Narrow Interneuron Unknown 0.15544041450777 272.5622860419 0.2
17 5482 0.34607790250832 2 CA1 Pyramidal Cell Unknown 2.0065669463699 243.57183880133 0.73
18 7868 1.7724233831528 7 CA1 Wide Interneuron Unknown 0.12709710218607 130.88744721786 0.57
19 6650 1.499994513178 1 CA1 Wide Interneuron Unknown 0 184.27986968888 0.71
20 6194 0.39148314203687 6 CA1 Pyramidal Cell Unknown 2.2602518566355 214.39551649385 0.73
21 14125 7.2206314681203 7 CA1 Wide Interneuron Unknown 0 192.03473524762 0.43
22 10395 0.69909923770172 8 CA1 Wide Interneuron Unknown 0.096200096200096 166.16326675189 0.62
23 886 0.087886066328785 1 CA1 Pyramidal Cell Unknown 0 345.70808913822 0.71
24 12349 0.77975090024322 2 CA1 Pyramidal Cell Unknown 0 187.74487226516 0.64
25 7434 1.1082952830795 1 CA1 Wide Interneuron Unknown 0.40355125100888 210.82423105581 0.7
26 2142 0.18144329987728 4 CA1 Pyramidal Cell Unknown 0 256.25330808274 0.69
27 19291 1.2205796009962 3 CA1 Pyramidal Cell Unknown 6.7907314291639 199.54567487059 0.67
28 19228 1.2295623782356 1 CA1 Pyramidal Cell Unknown 2.9124193883919 174.28271531509 0.69
29 20599 6.5004669045006 7 CA1 Narrow Interneuron Unknown 0.097092091849119 160.67421105717 0.21
30 28975 2.635646084043 6 CA1 Pyramidal Cell Unknown 15.254529767041 219.10150551486 0.73
31 24602 1.5524096106396 2 CA1 Pyramidal Cell Unknown 0.081294203723275 327.75324450685 0.66
32 12517 0.79073581824596 2 CA1 Wide Interneuron Unknown 0.079891347767037 185.68986382584 0.67
33 23471 1.4854388309615 4 CA1 Wide Interneuron Unknown 5.6665672532061 245.56150486517 0.68
34 26983 1.807040585865 3 CA1 Wide Interneuron Unknown 0 219.41746561832 0.64
35 35905 2.5774139247298 7 CA1 Narrow Interneuron Unknown 0.055702548391589 97.849301570757 0.38
36 1243 0.1073220786002 8 CA1 Narrow Interneuron Unknown 0 160.86280361316 0.22
37 1585 0.10072814821347 6 CA1 Narrow Interneuron Unknown 0.63091482649842 114.97909474533 0.38
38 7726 0.56212063041792 8 CA1 Wide Interneuron Unknown 0.51773233238416 152.39089011944 0.43
39 4187 0.90074469018857 7 CA1 Wide Interneuron Unknown 0.9553379508001 164.15473416585 0.53
40 2890 0.63083941194765 2 CA1 Wide Interneuron Unknown 0 1113.5163466293 0.71
41 1861 0.11740609447655 4 CA1 Pyramidal Cell Unknown 0 239.76720046648 0.73
42 7913 0.76159803460161 6 CA1 Pyramidal Cell Unknown 7.4560849235435 137.59225332316 0.71
43 61678 4.0825472142485 6 CA1 Narrow Interneuron Unknown 6.2096695742404 134.96240769938 0.32
44 16366 1.0330469908149 2 CA1 Pyramidal Cell Unknown 0.42771599657827 543.73016775101 0.72
45 7957 3.1329011554527 8 CA1 Narrow Interneuron Unknown 0 105.37103076133 0.54
46 37681 2.3940682611437 6 CA1 Narrow Interneuron Unknown 1.9903930362782 115.28983320054 0.37
47 48666 3.0975148741148 4 CA1 Pyramidal Cell Unknown 5.589117659146 174.51368764647 0.73
48 60267 3.8537890948742 1 CA1 Narrow Interneuron Unknown 0.11614980005642 285.64521396247 0.14
49 18293 1.1670576928779 3 CA1 Wide Interneuron Unknown 0.87465150604056 258.30806719589 0.73
50 22882 1.4436267219268 4 CA1 Pyramidal Cell Unknown 0.43702473560003 189.94648857873 0.71
51 24334 1.5351047348925 2 CA1 Wide Interneuron Unknown 0.041094764526999 241.15656469149 0.65
52 15917 1.0045256540813 1 CA1 Pyramidal Cell Unknown 2.8899918326318 158.03425326324 0.71
53 113128 8.0376640812304 8 CA1 Wide Interneuron Unknown 4.0396718761049 213.24622745668 0.47
54 28017 1.7771147749073 3 CA1 Pyramidal Cell Unknown 4.8541956669165 244.20083660191 0.73