Details for Peter_MS22_180711_112912_concat

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  • Date & time: 2018-06-29, 11:03:19

  • Animal subject: MS22

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-18 20:39:30 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:49:45 by Peter Petersen

  • Notes:
    recordingID = 166

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS22_180629_110319 Homecage_Sleep Homecage Homecage_Rat 6327.792
Peter_MS22_180711_124936 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 8314.632
Peter_MS22_180711_132950 Homecage_Sleep Homecage Homecage_Rat 16751.7

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 303870000 128 14 0.195

Implanted probes

MS22 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS22 : #2 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 20, 19, 18
8 114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9 124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10 102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11 104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12 91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13 71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14 81, 84, 83, 82
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-07-11 12.49.41 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180711_124938675.avi 2 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 7 6
Ripple 7 6
Cortical 7, 14
GammaPhaseCoupling 117 8

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-08-03_034548 Peter Petersen Yes 63 35492

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 17279 1.1565735488189 6 CA1 Pyramidal Cell Unknown 3.2409282944615 216.69724164626 0.72
2 38148 2.5118475955632 9 CA1 Pyramidal Cell Unknown 7.4446891055888 165.35925909583 0.73
3 16880 1.1115000483318 9 CA1 Pyramidal Cell Unknown 3.4952606635071 181.59694332471 0.72
4 9988 0.65868160306998 8 CA1 Wide Interneuron Unknown 1.3015618742491 130.58749973661 0.69
5 5195 0.34236640794388 6 CA1 Pyramidal Cell Unknown 0 210.51691138458 0.71
6 44910 2.956282068292 5 CA1 Pyramidal Cell Unknown 6.2569583611668 94.478517983421 0.72
7 73801 4.8574975164159 6 CA1 Pyramidal Cell Unknown 8.766818877793 194.79927838471 0.69
8 100911 6.6418361254641 6 CA1 Pyramidal Cell Unknown 17.282555915609 213.58507355941 0.73
9 44585 2.9352707169042 8 CA1 Pyramidal Cell Unknown 3.8802287764943 121.37095227781 0.68
10 14246 0.93771582981881 8 CA1 Pyramidal Cell Unknown 6.2473676821564 145.47649548002 0.68
11 206162 13.569438437931 8 CA1 Narrow Interneuron Unknown 1.5812807403886 161.12354723724 0.42
12 69675 4.5860033446856 8 CA1 Narrow Interneuron Unknown 3.2723358449946 116.40095966018 0.24
13 71607 4.7131145497622 8 CA1 Narrow Interneuron Unknown 2.1087323864985 77.711876035508 0.37
14 92485 6.0877121128874 11 CA1 Narrow Interneuron Unknown 2.054387197924 156.51501930247 0.31
15 56023 3.6877006192685 11 CA1 Pyramidal Cell Unknown 6.4080823947307 165.2070738025 0.72
16 52035 3.4262530730473 11 CA1 Pyramidal Cell Unknown 4.8621120399731 191.77024098281 0.7
17 27396 1.803955088564 8 CA1 Pyramidal Cell Unknown 4.7817199591181 117.38868784769 0.71
18 312907 20.594919549728 13 CA1 Narrow Interneuron Unknown 4.2568558709137 140.34421528782 0.24
19 37781 2.4905844900662 11 CA1 Pyramidal Cell Unknown 2.1968714433181 401.71397076675 0.72
20 10732 0.71025887575994 8 CA1 Pyramidal Cell Unknown 3.9135296310101 237.64441198173 0.73
21 8293 0.62975319427082 4 CA1 Pyramidal Cell Unknown 3.2557578680815 484.20142219077 0.71
22 77357 5.0923337093957 4 CA1 Pyramidal Cell Unknown 17.089597580051 264.51853724745 0.72
23 183933 12.106880028983 6 CA1 Narrow Interneuron Unknown 5.3334638156285 238.72766893428 0.25
24 36012 2.3710078984908 8 CA1 Pyramidal Cell Unknown 4.2763523270021 302.32196652414 0.72
25 56136 3.6947879038978 10 CA1 Pyramidal Cell Unknown 5.5044890979051 257.22208662394 0.73
26 16021 1.0546916403331 5 CA1 Pyramidal Cell Unknown 1.6228699831471 273.2983179967 0.72
27 114446 7.5329651145704 5 CA1 Narrow Interneuron Unknown 0.20096814218059 126.22893390338 0.29
28 33689 2.2178154550026 5 CA1 Pyramidal Cell Unknown 3.4432604114103 102.75313054793 0.71
29 349460 23.001574715344 4 CA1 Narrow Interneuron Unknown 2.7642648657929 138.990757778 0.31
30 217289 14.302317699637 5 CA1 Pyramidal Cell Unknown 1.0723046265573 92.55355313142 0.6
31 42944 2.8271343767601 4 CA1 Pyramidal Cell Unknown 4.168219076006 109.74075438198 0.73
32 7514 0.5017968454168 9 CA1 Pyramidal Cell Unknown 4.2587170614852 185.4462183224 0.72
33 5989 0.39467543755998 8 CA1 Pyramidal Cell Unknown 1.0018367006178 114.63180479881 0.73
34 23074 1.5219454705618 10 CA1 Wide Interneuron Unknown 0.26003293750542 67.485244852632 0.53
35 14387 0.95216965326974 6 CA1 Pyramidal Cell Unknown 5.1435323555988 143.74606133309 0.74
36 28426 1.8710238357484 3 CA1 Pyramidal Cell Unknown 1.5830577640189 94.129870992214 0.65
37 26806 1.7650626426698 5 CA1 Pyramidal Cell Unknown 6.6029993285085 134.1433137375 0.73
38 24198 1.5928768296538 10 CA1 Pyramidal Cell Unknown 2.2729151169518 141.14327631536 0.68
39 179785 11.833226662506 1 CA1 Narrow Interneuron Unknown 1.268181438941 88.22624532438 0.29
40 36270 2.3872485150189 6 CA1 Pyramidal Cell Unknown 3.7772263578715 102.32660545577 0.72
41 38225 2.5159422955059 10 CA1 Pyramidal Cell Unknown 3.8979725310661 181.82419451916 0.74
42 26908 1.77108726111 11 CA1 Pyramidal Cell Unknown 2.8244388286012 108.74173854855 0.64
43 191348 12.594415705397 4 CA1 Narrow Interneuron Unknown 2.680979158392 70.462092750951 0.33
44 734797 48.362852987289 10 CA1 Narrow Interneuron Unknown 0.6627680842464 307.08942331438 0.19
45 187011 12.308917355188 3 CA1 Narrow Interneuron Unknown 5.694852174471 87.062834890697 0.39
46 7737 0.54986140678214 8 CA1 Pyramidal Cell Unknown 0.38774718883288 207.57149264669 0.69
47 6803 0.44876633389397 6 CA1 Wide Interneuron Unknown 0 215.76032681919 0.73
48 5633 0.38118217103324 9 CA1 Pyramidal Cell Unknown 5.3257589206462 129.04214433598 0.73
49 3705 0.24392078868248 8 CA1 Pyramidal Cell Unknown 1.6194331983806 143.72548623768 0.72
50 26379 1.7365885662638 6 CA1 Pyramidal Cell Unknown 1.8196292505402 91.015699270881 0.7
51 14413 0.9496103746261 6 CA1 Pyramidal Cell Unknown 3.399708596406 168.19595925134 0.68
52 25175 1.657621158049 9 CA1 Pyramidal Cell Unknown 5.7199602780536 79.504641649823 0.72
53 16177 1.0654451932806 5 CA1 Pyramidal Cell Unknown 1.792668603573 200.63078226046 0.74
54 58109 4.1129680550693 10 CA1 Wide Interneuron Unknown 0.068836152747423 117.3203100667 0.48
55 18869 1.242116895806 6 CA1 Wide Interneuron Unknown 2.0668821877153 197.44792746758 0.74
56 4936 0.32526309746802 6 CA1 Pyramidal Cell Unknown 1.6207455429498 192.93572295096 0.71
57 133758 8.8040996018152 6 CA1 Narrow Interneuron Unknown 0.65042838559189 149.98921802566 0.32
58 14705 0.96964834191205 8 CA1 Pyramidal Cell Unknown 0.068004080244815 130.56910039448 0.71
59 13500 0.88871855921105 3 CA1 Pyramidal Cell Unknown 1.7037037037037 112.57356466285 0.74
60 27440 1.806668425008 9 CA1 Narrow Interneuron Unknown 0.10932944606414 118.01006767707 0.4
61 7951 0.52730717156489 5 CA1 Pyramidal Cell Unknown 0.25154068670607 144.67186026842 0.72
62 22328 1.4700775872819 4 CA1 Wide Interneuron Unknown 0 187.94134168607 0.7
63 43126 2.8385369480512 9 CA1 Narrow Interneuron Unknown 2.5042897555999 110.26798402503 0.32