Details for Peter_MS22_180720_110055_concat

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  • Date & time: 2018-07-20, 11:00:55

  • Animal subject: MS22

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-19 11:11:21 by Peter Petersen ADMIN
    Updated: 2020-07-20 22:41:13 by Peter Petersen ADMIN

  • Notes:
    recordingID = 168

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS22_180720_110055 Homecage_Sleep Homecage Homecage_Rat 13568.544
Peter_MS22_180720_165044 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 15474.564
Peter_MS22_180720_172412 Homecage_Sleep Homecage Homecage_Rat 16119.684
Peter_MS22_180720_173657 Homecage_Sleep Homecage Homecage_Rat 25866.144

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit

Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 517323000 128 14 0.195

Implanted probes

MS22 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS22 : #2 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label

1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 20, 19, 18
8 114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9 124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10 102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11 104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12 91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13 71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14 81, 84, 83, 82
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description

Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes

OptiTrack, Flex 13 Take 2018-07-20 04.50.57 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180720_165046943.avi 2 Video 10

Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups

CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Theta 7
Ripple 7
Cortical
GammaPhaseCoupling 117
CrazyChannel 128

Analysis tags

Tag

Value

Description


Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID

KiloSort Phy Kilosort_2019-08-03_015118 Peter Petersen Yes 71 35673

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 71395 2.7603017572939 10 CA1 Pyramidal Cell Unknown 2.9553890328454 181.54903471197 0.7
2 58565 2.2642953108288 4 CA1 Pyramidal Cell Unknown 1.5367540339793 151.44204767353 0.72
3 176454 6.8218915626829 10 CA1 Pyramidal Cell Unknown 6.2905913155837 262.77904697724 0.72
4 10164 0.39604265405101 10 CA1 Pyramidal Cell Unknown 1.4757969303424 206.41578319528 0.69
5 8944 0.34630114848894 9 CA1 Pyramidal Cell Unknown 6.149373881932 263.81465247109 0.72
6 56691 2.1919221492167 9 CA1 Pyramidal Cell Unknown 5.1154504242296 141.17545033644 0.66
7 49580 1.916881667937 9 CA1 Pyramidal Cell Unknown 2.1984671238403 162.80112851588 0.7
8 63508 2.4553856565392 9 CA1 Pyramidal Cell Unknown 3.5586067896958 118.31155581224 0.71
9 232552 8.990652621995 13 CA1 Narrow Interneuron Unknown 3.9690047817262 93.500100791156 0.36
10 147277 5.6940018940133 12 CA1 Pyramidal Cell Unknown 15.331653958188 128.36188591416 0.58
11 34679 1.3407684075234 8 CA1 Pyramidal Cell Unknown 2.0185126445399 163.28540015502 0.68
12 44917 1.737021200878 11 CA1 Pyramidal Cell Unknown 2.2708551328005 188.46414848421 0.69
13 41426 1.6276403618411 11 CA1 Pyramidal Cell Unknown 7.1694105151354 509.00558129675 0.73
14 74684 2.887578796439 11 CA1 Pyramidal Cell Unknown 3.6152321782443 133.16211063007 0.68
15 14286 0.55254035281175 8 CA1 Pyramidal Cell Unknown 3.639927201456 224.30265734707 0.72
16 37898 1.4691932888686 8 CA1 Pyramidal Cell Unknown 0.89714496807219 255.11011677101 0.71
17 28751 1.1116135558503 8 CA1 Pyramidal Cell Unknown 0.27825119126291 303.94138295668 0.7
18 86950 3.36158256673 7 CA1 Narrow Interneuron Unknown 0.47153536515239 185.13652578765 0.31
19 27017 1.0453050034075 8 CA1 Pyramidal Cell Unknown 2.2208239256764 170.31323250439 0.69
20 9494 0.36724696102705 6 CA1 Pyramidal Cell Unknown 0.42131872761744 358.96221892013 0.72
21 9273 0.35881727973938 6 CA1 Pyramidal Cell Unknown 1.7254394478594 182.41155961426 0.72
22 21101 0.81578022756182 9 CA1 Pyramidal Cell Unknown 0.18956447561727 70.536807575596 0.47
23 34983 1.3854616537992 11 CA1 Narrow Interneuron Unknown 0.74321813452248 120.8694721193 0.33
24 58908 2.2777467831902 10 CA1 Narrow Interneuron Unknown 2.9198071569227 137.46874970599 0.31
25 55115 2.1309324381945 1 CA1 Wide Interneuron Unknown 1.4515104780913 99.45568888604 0.5
26 52337 2.0241229024747 6 CA1 Pyramidal Cell Unknown 0.80249154517836 73.786881137442 0.55
27 107417 4.1528465340494 8 CA1 Narrow Interneuron Unknown 2.1970451604495 88.112869992366 0.34
28 85124 3.2911099489839 8 CA1 Narrow Interneuron Unknown 1.6681546919788 106.5102581518 0.36
29 60993 2.3581300947352 1 CA1 Narrow Interneuron Unknown 0.06558129621432 90.208361050726 0.4
30 56340 2.1781838139049 13 CA1 Pyramidal Cell Unknown 6.904508342208 120.55531714883 0.55
31 121415 4.6940175300398 5 CA1 Wide Interneuron Unknown 0.86480253675411 58.891259083275 0.49
32 135004 5.2194441778311 8 CA1 Narrow Interneuron Unknown 1.5184735267103 128.83498401237 0.35
33 267114 10.326821193048 3 CA1 Narrow Interneuron Unknown 5.6455296240556 59.674614568025 0.34
34 399090 15.429062535395 1 CA1 Narrow Interneuron Unknown 1.1300709113233 102.96497748009 0.24
35 257432 12.381753144025 11 CA1 Narrow Interneuron Unknown 0.73417446160539 182.97127890336 0.3
36 500968 19.367792738313 9 CA1 Narrow Interneuron Unknown 2.4253046102745 172.90157159162 0.29
37 311612 12.047150747673 9 CA1 Narrow Interneuron Unknown 1.7489698727905 140.78323951039 0.24
38 59571 2.3030815721271 8 CA1 Pyramidal Cell Unknown 16.685971361904 506.8614461052 0.69
39 644840 24.929981706499 10 CA1 Narrow Interneuron Unknown 1.2033992928478 108.14110599507 0.36
40 39426 1.5246381236552 11 CA1 Pyramidal Cell Unknown 3.7538680058844 130.65082286012 0.72
41 53952 2.0863371817487 11 CA1 Pyramidal Cell Unknown 4.8005634638197 130.32502857975 0.65
42 14660 0.64121512943861 10 CA1 Pyramidal Cell Unknown 1.7735334242838 361.55728440269 0.71
43 79571 3.0764662925081 10 CA1 Pyramidal Cell Unknown 3.7827851855576 223.55310598824 0.73
44 16773 0.64873365540879 9 CA1 Pyramidal Cell Unknown 2.2655458176832 124.9478571613 0.7
45 382975 14.806121803936 8 CA1 Narrow Interneuron Unknown 0.19844637378419 160.31443413976 0.33
46 18066 0.69850662137764 8 CA1 Pyramidal Cell Unknown 2.1033986493967 148.48865607421 0.7
47 28693 1.109311644018 9 CA1 Pyramidal Cell Unknown 1.2546614156763 141.14703698351 0.71
48 421430 16.292835596014 8 CA1 Narrow Interneuron Unknown 0.037965972996702 299.59244698043 0.34
49 9653 0.37460417614463 6 CA1 Pyramidal Cell Unknown 0.10359473738734 170.11204085673 0.55
50 45192 1.7478085050538 5 CA1 Pyramidal Cell Unknown 1.6817135776244 139.60012093484 0.73
51 5495 0.2133215611406 5 CA1 Pyramidal Cell Unknown 0.36396724294813 342.39567014016 0.72
52 52461 2.2842349368267 10 CA1 Pyramidal Cell Unknown 7.3959703398715 140.08841555048 0.71
53 329745 12.748165777404 4 CA1 Narrow Interneuron Unknown 0.081881453850703 88.351907950789 0.39
54 22702 0.87788737096371 10 CA1 Pyramidal Cell Unknown 3.3477226676064 119.69359709376 0.66
55 35391 1.3691763223883 6 CA1 Pyramidal Cell Unknown 3.6449944901246 91.939845229631 0.66
56 19913 0.7707593346748 11 CA1 Pyramidal Cell Unknown 1.8078642093105 132.69430962382 0.76
57 4794 0.18547000009208 10 CA1 Pyramidal Cell Unknown 0.20859407592824 128.66859117323 0.56
58 198867 7.6883883783936 10 CA1 Narrow Interneuron Unknown 0.040227891002529 98.382563852117 0.45
59 24259 0.93789282344682 9 CA1 Pyramidal Cell Unknown 3.0091924646523 180.94601936697 0.59
60 13405 0.51863697899612 6 CA1 Pyramidal Cell Unknown 2.9093621782917 203.35978573287 0.72
61 27567 1.065915662763 10 CA1 Wide Interneuron Unknown 0.72550513294882 71.185641453518 0.53
62 13787 0.5333306708707 11 CA1 Pyramidal Cell Unknown 1.233045622688 116.09961074832 0.62
63 40461 1.5644660374775 6 CA1 Pyramidal Cell Unknown 3.2871159882356 107.16959534824 0.73
64 16458 0.63652143734044 4 CA1 Pyramidal Cell Unknown 1.0329323125532 82.064232552824 0.69
65 59547 2.3857040258975 11 CA1 Pyramidal Cell Unknown 6.667002535812 169.49746921332 0.72
66 116604 4.5088567662082 11 CA1 Wide Interneuron Unknown 1.2006449178416 101.08742934334 0.52
67 56421 2.1814405408095 9 CA1 Narrow Interneuron Unknown 0.54944081104553 103.78124418437 0.3
68 5717 0.22105433759021 9 CA1 Pyramidal Cell Unknown 1.5742522301907 183.23555592751 0.68
69 36581 1.414398248613 6 CA1 Pyramidal Cell Unknown 5.8500314370848 100.4878919261 0.68
70 348113 13.458287038452 3 CA1 Narrow Interneuron Unknown 1.8729550462063 104.06973410069 0.31
71 124701 4.8212848981941 3 CA1 Wide Interneuron Unknown 3.2638070264072 56.964276391495 0.57