Details for som2_2

Back to list of sessions

  • Date & time: 2019-11-29,

  • Animal subject: RoyerS_som2

  • Investigator: Sebastien Royer

  • Experimenters: Sebastien Royer

  • Project: Ground truth cell-types using various opto-tag approaches

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-11-29 20:16:29 by Peter Petersen ADMIN
    Updated: 2020-06-27 18:38:23 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
som2_2

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit

Neuralynx, Digital Lynx 4SX (128ch) dat 32552 0 71 7 0.3815

Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label

1 2, 3, 4, 5, 6, 7, 8
2 9, 10, 11, 12, 13, 14, 15, 16
3 17, 18, 19, 20, 21, 22, 23, 24
4 25, 26, 27, 28, 29, 30, 31, 32
5 33, 34, 35, 36, 37, 38, 39, 40
6 41, 42, 43, 44, 45, 47, 48
7 57, 58, 59, 60, 61, 62, 63
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description

dat 65:71 Other sync signals

Equipment

File names

Epoch

Type

Framerate

Notes


Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups

CA1 – Field CA1 (View in Atlas) 1:64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Bad 65:71

Analysis tags

Tag

Value

Description


Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID

Klustakwik SebastienRoyer Sebastien Royer Yes 130 43871

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 41884 8.6810008632496 7 CA1 Wide Interneuron Unknown 0.57301117371789 113.58422975827 0.59136151388548
2 1720 1.0565997002088 7 CA1 Wide Interneuron Unknown 0 129.74830132466 0.65280167117228
3 3476 0.86801807322058 6 CA1 Narrow Interneuron Unknown 2.301495972382 202.87794843381 0.39936102236422
4 4438 1.5865067058307 6 CA1 Wide Interneuron Unknown 0.45065344749887 271.94022201957 0.79104202506758
5 5030 0.97383526121259 6 CA1 Pyramidal Cell Unknown 0 286.01090610971 0.76800196608503
6 13018 3.9624688514305 6 CA1 Pyramidal Cell Unknown 0.99861729912429 374.77179108149 0.60672155320718
7 16173 4.882701775365 6 CA1 Pyramidal Cell Unknown 0.61831447474185 208.9598071708 0.64512165151143
8 37093 6.1457587290228 6 CA1 Narrow Interneuron Unknown 3.6395007144205 140.39973173253 0.42240108134677
9 17583 8.0438916599896 6 CA1 Pyramidal Cell Unknown 0.51185804470227 580.57776607248 0.59136151388548
10 1456 0.61003858598591 6 CA1 Pyramidal Cell Unknown 0 160.89276036221 0.68352174981568
11 5502 2.2650364103307 6 CA1 Narrow Interneuron Unknown 0.54525627044711 127.12613838271 0.33792086507741
12 2265 0.87865579544885 6 CA1 Pyramidal Cell Unknown 0.44150110375276 197.15390307958 0.46080117965102
13 960 0.29713180171972 5 CA1 Pyramidal Cell Unknown 0 146.84868964385 0.75264192676333
14 5553 1.0744421628195 5 CA1 Pyramidal Cell Unknown 1.6207455429498 158.22139985335 0.59904153354633
15 19996 3.5633618337773 5 CA1 Pyramidal Cell Unknown 3.4506901380276 230.48371432803 0.59904153354633
16 27801 4.598661008324 5 CA1 Wide Interneuron Unknown 1.8344663861012 54.676343903081 0.69120176947653
17 1719 0.48635571198144 5 CA1 Narrow Interneuron Unknown 0.58173356602676 106.59259669422 0.42240108134677
18 1044 2.0277406218089 5 CA1 Narrow Interneuron Unknown 0 140.99315817686 0.39168100270337
19 1859 0.54366396819421 5 CA1 Narrow Interneuron Unknown 0.53792361484669 238.33578732486 0.37632096338167
20 1029 0.49852771685299 5 CA1 Narrow Interneuron Unknown 0 157.58606768703 0.33024084541656
21 1135 0.2089389563961 4 CA1 Pyramidal Cell Unknown 0.88105726872247 174.9784279029 0.78336200540673
22 5745 1.4380244374258 4 CA1 Pyramidal Cell Unknown 4.0034812880766 151.63833466571 0.69888178913738
23 11264 2.5015555371653 4 CA1 Pyramidal Cell Unknown 6.2144886363636 237.63204228857 0.78336200540673
24 9273 1.9356961048642 4 CA1 Pyramidal Cell Unknown 2.1567993098242 86.937712217959 0.76800196608503
25 2544 0.64046199475453 4 CA1 Pyramidal Cell Unknown 5.1100628930818 310.03545379829 0.58368149422463
26 8987 2.5415323002978 4 CA1 Pyramidal Cell Unknown 1.5578057193724 272.09096549185 0.47616121897272
27 3321 1.4248215318811 4 CA1 Narrow Interneuron Unknown 0.60222824450467 201.58730580467 0.41472106168592
28 4461 2.0570989216946 4 CA1 Pyramidal Cell Unknown 1.3449899125757 199.02186416924 0.76032194642418
29 8984 3.466822789204 4 CA1 Narrow Interneuron Unknown 1.0017809439003 100.75220951294 0.33024084541656
30 1586 0.44742393089238 3 CA1 Wide Interneuron Unknown 0 210.74568781523 0.67584173015483
31 7351 1.5482853096087 3 CA1 Pyramidal Cell Unknown 0.40810774044348 194.65867671585 0.69888178913738
32 8650 4.1743733072613 3 CA1 Wide Interneuron Unknown 0.11560693641618 222.44465164915 0.77568198574588
33 2905 0.76375142807296 3 CA1 Pyramidal Cell Unknown 0.68846815834768 235.17248420791 0.73728188744163
34 4141 0.81020841516189 3 CA1 Wide Interneuron Unknown 0 174.59576422474 0.54528139592037
35 2866 1.5710504607548 3 CA1 Wide Interneuron Unknown 0.69783670621075 434.00189506088 0.78336200540673
36 2872 0.84942808847528 3 CA1 Wide Interneuron Unknown 2.0891364902507 157.78680119222 0.65280167117228
37 4253 1.0329176891988 3 CA1 Pyramidal Cell Unknown 0.23512814483894 462.92158499692 0.64512165151143
38 10824 2.9553579403658 3 CA1 Wide Interneuron Unknown 0.18477457501848 172.25723081759 0.78336200540673
39 5394 1.4014041586083 3 CA1 Pyramidal Cell Unknown 0 318.57884575708 0.77568198574588
40 3866 1.0590244358176 3 CA1 Pyramidal Cell Unknown 0.77599586135541 388.37419537267 0.72192184811993
41 1592 0.75765070605685 3 CA1 Pyramidal Cell Unknown 2.5125628140704 649.02769077355 0.52992135659867
42 194 0.14707334640044 3 CA1 Pyramidal Cell Unknown 0 446.95458387641 0.57600147456377
43 1106 0.48597917640835 3 CA1 Pyramidal Cell Unknown 1.8083182640145 383.88751786408 0.60672155320718
44 610 0.55734290901454 3 CA1 Pyramidal Cell Unknown 0 451.72486747175 0.78336200540673
45 721 0.32425758113654 3 CA1 Pyramidal Cell Unknown 0 252.23026734165 0.63744163185058
46 74 0.081492693933811 3 CA1 Narrow Interneuron Unknown 0 1336.783573796 0.38400098304252
47 672 0.2990911529759 3 CA1 Pyramidal Cell Unknown 0 372.66885870863 0.59904153354633
48 387 0.16462561876114 3 CA1 Pyramidal Cell Unknown 0 419.82559234777 0.78336200540673
49 133 0.048898507419633 3 CA1 Pyramidal Cell Unknown 0 607.54767570513 0.65280167117228
50 163 0.075579827815098 3 CA1 Pyramidal Cell Unknown 0 484.03920105021 0.70656180879823
51 602 0.10213004285127 3 CA1 Pyramidal Cell Unknown 0 230.36115435104 0.69888178913738
52 760 0.29011920765148 3 CA1 Pyramidal Cell Unknown 0 503.85360398328 0.49152125829442
53 721 0.27543695470697 3 CA1 Pyramidal Cell Unknown 0 733.80771908712 0.65280167117228
54 2831 0.8807962870624 3 CA1 Pyramidal Cell Unknown 0 1222.5473791854 0.43776112066847
55 1242 0.66322108585091 3 CA1 Wide Interneuron Unknown 0 352.51469018262 0.77568198574588
56 847 0.58366404189207 3 CA1 Wide Interneuron Unknown 0 122.209618319 0.54528139592037
57 3832 1.3914199834811 3 CA1 Pyramidal Cell Unknown 2.348643006263 229.51026128498 0.70656180879823
58 1805 0.87810195918387 3 CA1 Pyramidal Cell Unknown 0 272.74050098473 0.71424182845908
59 22155 5.5634485703342 3 CA1 Pyramidal Cell Unknown 1.0832769126608 151.53476351065 0.73728188744163
60 3326 1.2952889472591 3 CA1 Pyramidal Cell Unknown 0.90198436560433 213.95355268851 0.62208159252888
61 123 0.029906736065243 3 CA1 Wide Interneuron Unknown 0 897.17998809315 0.44544114032932
62 3109 1.0537787036534 3 CA1 Pyramidal Cell Unknown 0.64329366355741 401.75902153624 0.60672155320718
63 4502 2.0099390757751 3 CA1 Wide Interneuron Unknown 0 394.48973262379 0.77568198574588
64 1156 0.61724574221857 3 CA1 Pyramidal Cell Unknown 0 340.07560894715 0.51456131727697
65 1078 0.50243228468271 3 CA1 Pyramidal Cell Unknown 0 492.96031456728 0.78336200540673
66 41884 8.6810008632496 7 CA1 Wide Interneuron Unknown 0.57301117371789 113.58422975827 0.59136151388548
67 1720 1.0565997002088 7 CA1 Wide Interneuron Unknown 0 129.74830132466 0.65280167117228
68 3476 0.86801807322058 6 CA1 Narrow Interneuron Unknown 2.301495972382 202.87794843381 0.39936102236422
69 4438 1.5865067058307 6 CA1 Wide Interneuron Unknown 0.45065344749887 271.94022201957 0.79104202506758
70 5030 0.97383526121259 6 CA1 Pyramidal Cell Unknown 0 286.01090610971 0.76800196608503
71 13018 3.9624688514305 6 CA1 Pyramidal Cell Unknown 0.99861729912429 374.77179108149 0.60672155320718
72 16173 4.882701775365 6 CA1 Pyramidal Cell Unknown 0.61831447474185 208.9598071708 0.64512165151143
73 17583 8.0438916599896 6 CA1 Pyramidal Cell Unknown 0.51185804470227 580.57776607248 0.59136151388548
74 37093 6.1457587290228 6 CA1 Narrow Interneuron Unknown 3.6395007144205 140.39973173253 0.42240108134677
75 1456 0.61003858598591 6 CA1 Pyramidal Cell Unknown 0 160.89276036221 0.68352174981568
76 2265 0.87865579544885 6 CA1 Pyramidal Cell Unknown 0.44150110375276 197.15390307958 0.46080117965102
77 5502 2.2650364103307 6 CA1 Narrow Interneuron Unknown 0.54525627044711 127.12613838271 0.33792086507741
78 960 0.29713180171972 5 CA1 Pyramidal Cell Unknown 0 146.84868964385 0.75264192676333
79 5553 1.0744421628195 5 CA1 Pyramidal Cell Unknown 1.6207455429498 158.22139985335 0.59904153354633
80 27801 4.598661008324 5 CA1 Wide Interneuron Unknown 1.8344663861012 54.676343903081 0.69120176947653
81 19996 3.5633618337773 5 CA1 Pyramidal Cell Unknown 3.4506901380276 230.48371432803 0.59904153354633
82 1044 2.0277406218089 5 CA1 Narrow Interneuron Unknown 0 140.99315817686 0.39168100270337
83 1719 0.48635571198144 5 CA1 Narrow Interneuron Unknown 0.58173356602676 106.59259669422 0.42240108134677
84 1859 0.54366396819421 5 CA1 Narrow Interneuron Unknown 0.53792361484669 238.33578732486 0.37632096338167
85 1029 0.49852771685299 5 CA1 Narrow Interneuron Unknown 0 157.58606768703 0.33024084541656
86 5745 1.4380244374258 4 CA1 Pyramidal Cell Unknown 4.0034812880766 151.63833466571 0.69888178913738
87 1135 0.2089389563961 4 CA1 Pyramidal Cell Unknown 0.88105726872247 174.9784279029 0.78336200540673
88 11264 2.5015555371653 4 CA1 Pyramidal Cell Unknown 6.2144886363636 237.63204228857 0.78336200540673
89 9273 1.9356961048642 4 CA1 Pyramidal Cell Unknown 2.1567993098242 86.937712217959 0.76800196608503
90 2544 0.64046199475453 4 CA1 Pyramidal Cell Unknown 5.1100628930818 310.03545379829 0.58368149422463
91 8987 2.5415323002978 4 CA1 Pyramidal Cell Unknown 1.5578057193724 272.09096549185 0.47616121897272
92 3321 1.4248215318811 4 CA1 Narrow Interneuron Unknown 0.60222824450467 201.58730580467 0.41472106168592
93 4461 2.0570989216946 4 CA1 Pyramidal Cell Unknown 1.3449899125757 199.02186416924 0.76032194642418
94 8984 3.466822789204 4 CA1 Narrow Interneuron Unknown 1.0017809439003 100.75220951294 0.33024084541656
95 1586 0.44742393089238 3 CA1 Wide Interneuron Unknown 0 210.74568781523 0.67584173015483
96 8650 4.1743733072613 3 CA1 Wide Interneuron Unknown 0.11560693641618 222.44465164915 0.77568198574588
97 7351 1.5482853096087 3 CA1 Pyramidal Cell Unknown 0.40810774044348 194.65867671585 0.69888178913738
98 2905 0.76375142807296 3 CA1 Pyramidal Cell Unknown 0.68846815834768 235.17248420791 0.73728188744163
99 4141 0.81020841516189 3 CA1 Wide Interneuron Unknown 0 174.59576422474 0.54528139592037
100 2866 1.5710504607548 3 CA1 Wide Interneuron Unknown 0.69783670621075 434.00189506088 0.78336200540673
101 2872 0.84942808847528 3 CA1 Wide Interneuron Unknown 2.0891364902507 157.78680119222 0.65280167117228
102 4253 1.0329176891988 3 CA1 Pyramidal Cell Unknown 0.23512814483894 462.92158499692 0.64512165151143
103 10824 2.9553579403658 3 CA1 Wide Interneuron Unknown 0.18477457501848 172.25723081759 0.78336200540673
104 5394 1.4014041586083 3 CA1 Pyramidal Cell Unknown 0 318.57884575708 0.77568198574588
105 3866 1.0590244358176 3 CA1 Pyramidal Cell Unknown 0.77599586135541 388.37419537267 0.72192184811993
106 1592 0.75765070605685 3 CA1 Pyramidal Cell Unknown 2.5125628140704 649.02769077355 0.52992135659867
107 194 0.14707334640044 3 CA1 Pyramidal Cell Unknown 0 446.95458387641 0.57600147456377
108 1106 0.48597917640835 3 CA1 Pyramidal Cell Unknown 1.8083182640145 383.88751786408 0.60672155320718
109 610 0.55734290901454 3 CA1 Pyramidal Cell Unknown 0 451.72486747175 0.78336200540673
110 721 0.32425758113654 3 CA1 Pyramidal Cell Unknown 0 252.23026734165 0.63744163185058
111 672 0.2990911529759 3 CA1 Pyramidal Cell Unknown 0 372.66885870863 0.59904153354633
112 387 0.16462561876114 3 CA1 Pyramidal Cell Unknown 0 419.82559234777 0.78336200540673
113 74 0.081492693933811 3 CA1 Narrow Interneuron Unknown 0 1336.783573796 0.38400098304252
114 133 0.048898507419633 3 CA1 Pyramidal Cell Unknown 0 607.54767570513 0.65280167117228
115 163 0.075579827815098 3 CA1 Pyramidal Cell Unknown 0 484.03920105021 0.70656180879823
116 602 0.10213004285127 3 CA1 Pyramidal Cell Unknown 0 230.36115435104 0.69888178913738
117 760 0.29011920765148 3 CA1 Pyramidal Cell Unknown 0 503.85360398328 0.49152125829442
118 721 0.27543695470697 3 CA1 Pyramidal Cell Unknown 0 733.80771908712 0.65280167117228
119 847 0.58366404189207 3 CA1 Wide Interneuron Unknown 0 122.209618319 0.54528139592037
120 1242 0.66322108585091 3 CA1 Wide Interneuron Unknown 0 352.51469018262 0.77568198574588
121 2831 0.8807962870624 3 CA1 Pyramidal Cell Unknown 0 1222.5473791854 0.43776112066847
122 3832 1.3914199834811 3 CA1 Pyramidal Cell Unknown 2.348643006263 229.51026128498 0.70656180879823
123 1805 0.87810195918387 3 CA1 Pyramidal Cell Unknown 0 272.74050098473 0.71424182845908
124 22155 5.5634485703342 3 CA1 Pyramidal Cell Unknown 1.0832769126608 151.53476351065 0.73728188744163
125 123 0.029906736065243 3 CA1 Wide Interneuron Unknown 0 897.17998809315 0.44544114032932
126 3326 1.2952889472591 3 CA1 Pyramidal Cell Unknown 0.90198436560433 213.95355268851 0.62208159252888
127 3109 1.0537787036534 3 CA1 Pyramidal Cell Unknown 0.64329366355741 401.75902153624 0.60672155320718
128 4502 2.0099390757751 3 CA1 Wide Interneuron Unknown 0 394.48973262379 0.77568198574588
129 1156 0.61724574221857 3 CA1 Pyramidal Cell Unknown 0 340.07560894715 0.51456131727697
130 1078 0.50243228468271 3 CA1 Pyramidal Cell Unknown 0 492.96031456728 0.78336200540673