Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 124, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140326-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140326-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140326-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140326-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140326-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

---

Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	140	49140

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	24414	1.0053822418067	16		Wide Interneuron	Superficial	0.040960104857868	157.54548678439	0.5
2	369278	15.192814025	16		Narrow Interneuron	Superficial	1.6816598876727	71.028848201829	0.3
3	3218	0.13282582887316	16		Pyramidal Cell	Superficial	0.31075201988813	127.8560156765	0.71
4	7455	0.30696333351804	16		Pyramidal Cell	Superficial	0.40241448692153	89.278531554093	0.73
5	28191	1.1608527422224	16		Wide Interneuron	Superficial	0.17736156929517	121.9756972565	0.66
6	21220	0.87339206005905	16		Narrow Interneuron	Superficial	0.47125353440151	85.430007719669	0.23
7	295943	12.176497108318	16		Narrow Interneuron	Superficial	1.6759984186144	75.57892461362	0.4
8	148257	6.0996794184555	16		Narrow Interneuron	Superficial	0.54634857038791	76.004312463446	0.16
9	12143	0.49963486496443	15		Pyramidal Cell	Superficial	0.49411183397842	72.203410665656	0.62
10	2171	0.089624852638898	15		Pyramidal Cell	Superficial	0	315.79118667237	0.65
11	1555	0.064069050532517	15		Wide Interneuron	Superficial	0	205.17053662367	0.69
12	2967	0.12323876278525	15		Pyramidal Cell	Superficial	0	228.86643602858	0.71
13	1491	0.06145087278755	15		Pyramidal Cell	Superficial	0	155.57343786267	0.64
14	26103	1.0740964398246	15		Pyramidal Cell	Superficial	0.68957591081485	91.380061518429	0.59
15	15610	0.64234164135173	15		Pyramidal Cell	Superficial	0.83279948750801	82.23102398021	0.65
16	245272	10.090818020445	15		Narrow Interneuron	Superficial	3.722397990802	63.928260126454	0.27
17	850	0.036911886842399	15		Wide Interneuron	Superficial	0	284.45175912934	0.62
18	8110	0.33376450892788	15		Pyramidal Cell	Superficial	0	192.60046461443	0.62
19	515734	21.217989158174	14		Narrow Interneuron	Deep	0.96755304090869	138.47833818824	0.3
20	3012	0.1240057396213	14		Pyramidal Cell	Deep	0	138.93634138219	0.65
21	3075	0.13676907053267	14		Pyramidal Cell	Deep	0	293.145051138	0.62
22	3501	0.14419946440958	14		Pyramidal Cell	Deep	0.28563267637818	95.080505376904	0.71
23	2336	0.096834815397575	14		Wide Interneuron	Deep	0.42808219178082	59.979690205062	0.53
24	14672	0.60378622937027	14		Pyramidal Cell	Deep	0	139.26143075854	0.57
25	10404	0.42835329147519	14		Wide Interneuron	Deep	0.48058439061899	103.74454244951	0.66
26	24340	1.0018427753595	14		Pyramidal Cell	Deep	0.86277732128184	73.797590354506	0.58
27	2419	0.099773862684586	14		Pyramidal Cell	Deep	0	120.52952144934	0.72
28	5251	0.21628862153384	14		Pyramidal Cell	Deep	0	275.28823470774	0.69
29	4520	0.18700896467605	14		Wide Interneuron	Deep	0	145.8832570813	0.65
30	12097	0.49778746290857	14		Wide Interneuron	Deep	0.33066049433744	77.347286074041	0.62
31	23153	0.95325500228416	13		Pyramidal Cell	Deep	0	212.90353921872	0.66
32	10701	0.44191921173341	13		Pyramidal Cell	Deep	0.84104289318755	80.43891912272	0.68
33	18873	0.78417248168116	13		Pyramidal Cell	Deep	0.21194298733641	122.10378529326	0.63
34	22228	0.91640656824307	13		Wide Interneuron	Deep	0.40489472737088	93.166548068986	0.69
35	7223	0.29897776818825	13		Pyramidal Cell	Deep	0.69223314412294	172.68832000126	0.69
36	7126	0.29350133773861	13		Pyramidal Cell	Deep	0.2806623631771	97.291436231109	0.65
37	6209	0.25561799222055	13		Pyramidal Cell	Deep	0.48316959252698	113.0005697423	0.62
38	13246	0.55024803948692	13		Pyramidal Cell	Deep	0	123.05418867992	0.66
39	2300	0.09548895797658	13		Pyramidal Cell	Deep	0	107.50927247627	0.67
40	69372	2.8544354626912	13		Wide Interneuron	Deep	0.38920601971977	116.62727118689	0.7
41	136096	5.5992282481542	13		Wide Interneuron	Deep	2.1161533035504	58.115179618217	0.43
42	2758	0.11372602203005	13		Wide Interneuron	Deep	0	219.90531567785	0.71
43	6333	0.26057600785311	13		Pyramidal Cell	Deep	0.15790304752882	196.15940714886	0.6
44	19232	0.79130933821488	13		Wide Interneuron	Deep	0.41597337770383	101.51428024007	0.7
45	19601	0.80961045987801	13		Pyramidal Cell	Deep	0.86730268863833	143.56749749256	0.67
46	7084	0.29153058305203	13		Pyramidal Cell	Deep	0	73.433333759562	0.66
47	7322	0.30373962530009	12		Pyramidal Cell	Deep	0	379.55808940592	0.66
48	588205	24.199557830277	12		Narrow Interneuron	Deep	0.9010464038898	66.12869899113	0.39
49	10873	0.44949966920661	12		Pyramidal Cell	Deep	0.64379656028695	111.05211829007	0.64
50	7791	0.32084147952636	12		Pyramidal Cell	Deep	0.38505968425106	101.55725684825	0.68
51	9502	0.39413153982107	12		Pyramidal Cell	Deep	0.73668701326037	122.62885885629	0.72
52	10130	0.42226113254116	12		Pyramidal Cell	Deep	0.19743336623889	158.70389819252	0.67
53	15052	0.62442810452331	12		Pyramidal Cell	Deep	0.066436353972894	186.88081362241	0.65
54	12495	0.51440164988432	12		Pyramidal Cell	Deep	1.4405762304922	95.283990847126	0.67
55	6037	0.25070864488695	12		Pyramidal Cell	Deep	0	202.76083066545	0.69
56	8849	0.36558044456701	12		Pyramidal Cell	Deep	1.2430783139338	114.62865264781	0.67
57	8424	0.34661646433555	12		Pyramidal Cell	Deep	0.71225071225071	82.761726022596	0.64
58	320343	13.179399493078	12		Narrow Interneuron	Deep	2.8563133890861	58.913546286371	0.36
59	12376	0.509820031428	12		Pyramidal Cell	Deep	0.72721396250808	71.096027162501	0.57
60	374931	15.425219121415	11		Narrow Interneuron	Deep	1.538949833436	54.122541251529	0.37
61	1747	0.0718978711277	11		Pyramidal Cell	Deep	0	239.27848479675	0.7
62	6233	0.2582307878733	11		Pyramidal Cell	Deep	0	181.75003728053	0.7
63	1927	0.079419213678526	11		Wide Interneuron	Deep	0	114.24783439898	0.6
64	1818	0.075563518681334	11		Pyramidal Cell	Deep	0	359.56842628208	0.73
65	20511	0.84421665288656	11		Pyramidal Cell	Deep	0.19501730778607	67.874022997613	0.6
66	16521	0.67980472449841	11		Pyramidal Cell	Deep	0.42370316566794	46.28232424126	0.6
67	48492	1.9954951487148	10		Wide Interneuron	Deep	0.4743050400066	59.216844903705	0.6
68	65442	2.6924644216913	10		Wide Interneuron	Deep	1.2530179395495	58.717631559129	0.5
69	19567	0.80618110303707	10		Wide Interneuron	Deep	0.051106454745234	92.185482743513	0.62
70	4258	0.17529675263918	10		Wide Interneuron	Deep	0	141.8258352817	0.52
71	276168	11.361922102099	10		Wide Interneuron	Deep	0.77851163060166	65.093758885487	0.52
72	35902	1.4770900705185	10		Wide Interneuron	Deep	0.30638961617737	86.210808752511	0.58
73	26316	1.0827221998542	8		Pyramidal Cell	Deep	0.91199270405837	264.0283511502	0.62
74	890	0.03866860802196	8		Wide Interneuron	Deep	0	164.42506014284	0.63
75	5135	0.21175482061086	8		Pyramidal Cell	Deep	0	218.97287753186	0.59
76	24567	1.0108522833127	8		Pyramidal Cell	Deep	0	243.04780779598	0.59
77	11184	0.46082811739792	8		Pyramidal Cell	Deep	0	241.02018745116	0.59
78	303131	12.472542254578	8		Narrow Interneuron	Deep	2.9162309364598	78.269719199648	0.34
79	477195	19.632428499768	8		Narrow Interneuron	Deep	2.2506522490806	110.22412839186	0.34
80	3622	0.14975246882315	8		Wide Interneuron	Deep	0	173.31288059987	0.63
81	2576	0.11056308180925	8		Pyramidal Cell	Deep	0	176.19029314444	0.63
82	2849	0.1182079676257	8		Pyramidal Cell	Deep	0	301.24195328857	0.65
83	3094	0.13175514320137	8		Wide Interneuron	Deep	0	401.62022658031	0.63
84	18417	0.77571043853493	8		Narrow Interneuron	Deep	0.10859531954173	110.57105880962	0.37
85	11367	0.47041230154613	8		Pyramidal Cell	Deep	0.087973959707926	117.06349794952	0.63
86	8525	0.35108580698766	8		Pyramidal Cell	Deep	0.23460410557185	145.6115417742	0.61
87	11835	0.49054453543791	8		Pyramidal Cell	Deep	0.42247570764681	127.92104292053	0.62
88	5254	0.21634176829258	8		Pyramidal Cell	Deep	0.19033117624667	94.048038533523	0.62
89	567735	23.357373193199	7		Narrow Interneuron	Deep	7.2075880472403	85.564104541965	0.32
90	490508	20.180131041915	7		Wide Interneuron	Deep	6.6420935030621	80.534161555946	0.43
91	1933	0.080238696381949	7		Wide Interneuron	Deep	0.51733057423694	206.57546454138	0.69
92	4244	0.17476611057393	7		Pyramidal Cell	Deep	0.23562676720075	208.05444779872	0.73
93	11456	0.47141475739249	7		Pyramidal Cell	Deep	0.61103351955307	80.552751509723	0.6
94	13251	0.54657803797842	7		Wide Interneuron	Deep	0.60372802052675	103.79322834916	0.64
95	28128	1.1581478138274	7		Pyramidal Cell	Deep	0.24886234357224	75.540495176291	0.6
96	27523	1.1323954338679	7		Wide Interneuron	Deep	0.36333248555753	80.719946683292	0.63
97	6092	0.25693226240069	7		Pyramidal Cell	Deep	0	119.5738419705	0.62
98	22701	0.93436573015357	7		Wide Interneuron	Deep	0.1321527686005	91.315675718498	0.63
99	7543	0.31057873988883	7		Pyramidal Cell	Deep	0.92801272703169	126.68524580952	0.64
100	62746	2.5814762339661	6		Wide Interneuron	Superficial	0.11156089631212	98.219570936683	0.66
101	16374	0.67369728247019	6		Pyramidal Cell	Deep	1.0382313423721	92.703416864749	0.56
102	22964	0.94608002223659	6		Pyramidal Cell	Deep	0.17418568193694	109.07279186414	0.64
103	6343	0.2624906771168	6		Pyramidal Cell	Superficial	0.78827053444742	133.24733232714	0.63
104	9387	0.38771232862053	6		Pyramidal Cell	Deep	0	146.34679761369	0.63
105	6454	0.26812773321046	6		Wide Interneuron	Superficial	0	123.69337127705	0.64
106	9189	0.37923047113245	6		Pyramidal Cell	Deep	0	91.725595834732	0.71
107	70275	2.8913642491494	6		Wide Interneuron	Deep	1.9779437922448	84.778319506955	0.6
108	28360	1.1670002308035	6		Pyramidal Cell	Deep	0.91678420310296	68.911706289266	0.6
109	17542	0.7219869322382	6		Pyramidal Cell	Deep	0	139.96150847315	0.66
110	21378	0.88278751592519	6		Pyramidal Cell	Superficial	0.046777060529516	118.26246852941	0.6
111	77406	3.1848448880743	5		Pyramidal Cell	Deep	0.077513371056507	223.58938301004	0.62
112	31790	1.3084302548208	5		Pyramidal Cell	Deep	0.031456432840516	186.90416183882	0.66
113	7616	0.33199829926722	5		Pyramidal Cell	Deep	0	244.91395557658	0.67
114	17506	0.72148590570421	5		Wide Interneuron	Deep	0.28561636010511	78.593510145483	0.58
115	44268	1.8220536728822	5		Wide Interneuron	Deep	0.60992138791	74.571984080823	0.61
116	398550	16.396902378087	5		Wide Interneuron	Deep	7.8434324426044	78.229003008266	0.44
117	3984	0.16427440213055	5		Pyramidal Cell	Deep	0	105.60616892489	0.7
118	20508	0.84394351496095	5		Pyramidal Cell	Deep	0.73142188414277	82.009813325888	0.62
119	23574	0.97072241249234	5		Pyramidal Cell	Deep	0.67871383727836	127.88224477584	0.66
120	34125	1.4041590615337	5		Pyramidal Cell	Deep	2.2857142857143	80.444985439879	0.67
121	6445	0.26903350194471	5		Pyramidal Cell	Deep	0.31031807602793	114.5295551762	0.71
122	173842	7.166813996099	4		Wide Interneuron	Deep	0.02300939933963	284.04776662737	0.72
123	12535	0.51586516460778	4		Wide Interneuron	Deep	0.079776625448744	213.67269303542	0.7
124	28583	1.1761461496496	4		Wide Interneuron	Deep	0.27988664590841	198.53671797375	0.67
125	23447	0.96761127893382	4		Pyramidal Cell	Deep	0.17059751780612	236.01208219792	0.7
126	13729	0.56537641583161	4		Pyramidal Cell	Deep	0.14567703401559	118.30577223681	0.69
127	21601	0.89541556928413	4		Pyramidal Cell	Deep	0.23147076524235	123.22643323437	0.67
128	6245	0.25701846061948	4		Pyramidal Cell	Deep	0	68.878425025426	0.71
129	7065	0.29161667141677	4		Pyramidal Cell	Deep	0	113.84880080112	0.65
130	11064	0.45528704488162	4		Pyramidal Cell	Deep	0.18076644974693	126.4476638901	0.63
131	24515	1.0088573394528	4		Wide Interneuron	Deep	0.36712217009994	116.15560656691	0.71
132	68906	2.838788161436	4		Wide Interneuron	Deep	0.63855106957304	99.408251819622	0.66
133	6972	0.28740877847571	4		Pyramidal Cell	Deep	0.14343086632243	74.348551238937	0.67
134	8745	0.36318272936007	4		Pyramidal Cell	Deep	0	261.96718039523	0.71
135	9432	0.38824576160053	4		Pyramidal Cell	Deep	0.21204410517388	88.642567350911	0.7
136	10517	0.43270788412856	4		Pyramidal Cell	Deep	0.28525244841685	62.7673796002	0.7
137	31654	1.302362271996	2		Pyramidal Cell	Deep	0.12636633600809	57.193336229235	0.68
138	9907	0.40869624336929	2		Pyramidal Cell	Deep	0.20187746038155	114.35556236385	0.66
139	46040	1.8942078107988	2		Wide Interneuron	Deep	0.47784535186794	62.374005416054	0.65
140	43332	1.7827767351619	1		Wide Interneuron	Deep	0.36924213052709	91.634075337419	0.6