Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140402-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140402-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140402-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140402-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140402-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	71	49644

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	115075	4.9872561466047	16		Narrow Interneuron	Deep	0.93851835759287	80.469352187803	0.33
2	83959	3.6389569658589	16		Pyramidal Cell	Deep	1.0004883335914	75.467003639665	0.61
3	39814	1.7255141656461	16		Pyramidal Cell	Deep	0.075350379263576	68.90191671471	0.64
4	2205	0.096522064022389	15		Wide Interneuron	Deep	0	224.6078619282	0.72
5	209038	9.0595193667498	15		Narrow Interneuron	Deep	0.53578775150929	72.151195088561	0.37
6	14992	0.65031538452606	14		Pyramidal Cell	Superficial	0.33351120597652	89.450458576905	0.7
7	384852	16.678865375601	14		Narrow Interneuron	Superficial	1.4187271990272	80.247011927853	0.36
8	10109	0.43897676283953	14		Narrow Interneuron	Superficial	0	215.77921401348	0.16
9	35405	1.534424199074	14		Wide Interneuron	Superficial	0.42366897330885	142.01899528997	0.66
10	5662	0.24950352895905	13		Wide Interneuron	Deep	0	189.04731304283	0.67
11	662952	28.731201902942	13		Narrow Interneuron	Deep	0.18855060396529	176.658098575	0.3
12	8252	0.35800525864692	13		Pyramidal Cell	Deep	0	150.16298981876	0.62
13	33607	1.4570032570571	13		Pyramidal Cell	Deep	1.1009611092927	93.769372698985	0.73
14	37612	1.6300928382555	13		Pyramidal Cell	Deep	0.13293629692651	136.5859283955	0.68
15	99003	4.2907975100719	13		Wide Interneuron	Deep	0.74745209741119	71.71779635489	0.43
16	12789	0.55449543789735	13		Pyramidal Cell	Deep	0.23457658925639	113.76284985797	0.65
17	29901	1.2959965150216	13		Pyramidal Cell	Deep	0.3009932778168	85.734229702791	0.54
18	14055	0.61206267090628	12		Wide Interneuron	Deep	0	154.52837766197	0.73
19	12123	0.52554975092028	12		Pyramidal Cell	Superficial	0.16497566608925	79.730541747912	0.66
20	8173	0.35431563608666	12		Pyramidal Cell	Deep	0.2447081854888	115.73212561837	0.73
21	12311	0.53391661493622	12		Pyramidal Cell	Deep	0.16245633985866	149.72209802468	0.73
22	4775	0.20702130240964	12		Wide Interneuron	Superficial	0.41884816753927	139.87250363115	0.71
23	5101	0.22126365691472	12		Wide Interneuron	Deep	0.1960399921584	121.36998809474	0.73
24	41940	1.8179272989027	10		Wide Interneuron	Deep	1.311397234144	233.18818760797	0.55
25	11615	0.55311557167721	10		Pyramidal Cell	Deep	0.25828669823504	286.28377545282	0.57
26	119850	5.1942522826924	8		Wide Interneuron	Deep	0.033375052148519	94.425358295743	0.47
27	12166	0.5274616678527	7		Pyramidal Cell	Deep	0.8219628472793	95.297409865864	0.69
28	8686	0.3766680018375	8		Pyramidal Cell	Deep	0	69.828783497561	0.65
29	6174	0.26799245639867	7		Pyramidal Cell	Deep	0.16196954972465	85.151168544812	0.55
30	19986	0.86625029743221	6		Pyramidal Cell	Deep	2.7018913239267	87.080047464715	0.68
31	16630	0.72093982912634	6		Wide Interneuron	Deep	0.78171978352375	73.540137284635	0.73
32	9753	0.42278042266724	6		Pyramidal Cell	Deep	0	147.64186822866	0.65
33	14860	0.64409401901077	6		Pyramidal Cell	Deep	0.87483176312248	73.795042496148	0.7
34	1157	0.051652289093514	6		Pyramidal Cell	Deep	0	168.33214571349	0.66
35	14946	0.64774223821822	6		Pyramidal Cell	Deep	0.066907533788305	84.152977291237	0.72
36	8890	0.38537937663767	6		Wide Interneuron	Deep	0	132.57461423721	0.7
37	16292	0.70644117054674	6		Pyramidal Cell	Deep	0	210.75902138654	0.6
38	12997	0.56329879144866	6		Wide Interneuron	Deep	0	157.84443424382	0.59
39	10069	0.4363835866334	6		Pyramidal Cell	Deep	0	145.06971805028	0.71
40	17002	0.73724927231758	5		Pyramidal Cell	Deep	0.058816609810611	111.07427911171	0.73
41	69912	3.0299501680853	5		Wide Interneuron	Deep	0.10012587252546	75.878961818948	0.75
42	13006	0.56389572185028	5		Wide Interneuron	Deep	0.15377518068584	126.17395334417	0.72
43	19787	0.85773144809391	5		Wide Interneuron	Deep	0.40430585738111	96.961580507972	0.72
44	8452	0.36645291763964	5		Wide Interneuron	Deep	0.35494557501183	66.430238230189	0.73
45	9956	0.43223556772451	5		Pyramidal Cell	Deep	0	262.1652595976	0.72
46	17780	0.7705868707695	5		Wide Interneuron	Deep	0.50618672665917	57.433332545343	0.73
47	1452	0.063209693417185	5		Pyramidal Cell	Deep	0	120.66692560233	0.56
48	24867	1.0777379812712	5		Wide Interneuron	Deep	0.040213938150963	89.966072555799	0.73
49	5531	0.23974464694058	5		Pyramidal Cell	Deep	0	116.47058797992	0.72
50	11141	0.48310801926508	5		Pyramidal Cell	Deep	0.08975854950184	134.67184258126	0.61
51	12866	0.55773176620273	4		Pyramidal Cell	Deep	0.31089693766516	164.65797502258	0.71
52	23832	1.0330898590832	4		Wide Interneuron	Deep	1.21685129238	105.71970633148	0.73
53	9791	0.42433925359475	4		Pyramidal Cell	Deep	1.1234807476254	78.364545198545	0.72
54	14171	0.61524595853012	4		Wide Interneuron	Deep	0	71.844478961532	0.64
55	15083	0.65370783099074	4		Pyramidal Cell	Deep	0	101.90223296021	0.73
56	7907	0.34281216112506	4		Wide Interneuron	Deep	0.12647021626407	145.96713438472	0.67
57	23587	1.0225447490295	4		Wide Interneuron	Deep	0.3391698817145	78.510178359519	0.72
58	17193	0.74517968474006	4		Pyramidal Cell	Deep	0.63979526551504	54.142286924759	0.67
59	12516	0.54256647611403	4		Wide Interneuron	Deep	0.47938638542665	74.979570080434	0.73
60	10702	0.46403790867983	3		Wide Interneuron	Deep	0.1868809568305	95.476934394319	0.73
61	11055	0.4794498731005	3		Pyramidal Cell	Deep	0.5427408412483	63.992501094202	0.65
62	6164	0.26730358409375	3		Wide Interneuron	Deep	0	84.951218922861	0.71
63	6347	0.27561988679948	3		Pyramidal Cell	Deep	0.63021900110288	93.143702412773	0.71
64	37385	1.620379631434	3		Wide Interneuron	Deep	0.05349739200214	120.01473530354	0.45
65	3288	0.14303676567562	3		Pyramidal Cell	Deep	0	101.06853877816	0.53
66	13599	0.59005564755412	3		Wide Interneuron	Deep	0.5147437311567	114.65082961825	0.66
67	207542	8.994737981634	3		Wide Interneuron	Deep	1.3394879108807	103.87893813923	0.46
68	10767	0.46679087890883	2		Wide Interneuron	Deep	0.092876381536175	95.19657387674	0.6
69	11069	0.479926269728	2		Pyramidal Cell	Deep	0.36136959074894	59.394069431952	0.69
70	8735	0.3788436800483	1		Pyramidal Cell	Deep	0	115.5279202947	0.6
71	13198	0.57223933817967	1		Pyramidal Cell	Deep	0.22730716775269	70.925117173913	0.48