Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140403-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140403-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140403-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140403-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140403-05-postsleep.mpg	5	Video	30
Basler, acA1300-200uc	Rat09-20140403-06-postrun.mpg	6	Video

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	64	49708

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	39851	2.1514260531703	16		Narrow Interneuron	Superficial	0.77789766881634	90.773754904267	0.24
2	1025	0.055429896281119	16		Wide Interneuron	Superficial	0	92.795553636548	0.73
3	7636	0.41235710025519	15		Pyramidal Cell	Deep	0.52383446830801	62.409180533153	0.71
4	140284	7.5720364903997	14		Wide Interneuron	Deep	2.4450400615893	55.993120825478	0.5
5	13863	0.74853205873635	13		Pyramidal Cell	Deep	0.36067229315444	92.470150476488	0.73
6	16944	0.91526876207647	13		Wide Interneuron	Deep	0.059017941454202	109.69612327868	0.73
7	36096	1.9484820871914	13		Wide Interneuron	Deep	0.05540780141844	171.00390245831	0.73
8	16613	0.89775449568815	13		Wide Interneuron	Deep	0.24077529645458	104.01702621504	0.69
9	8435	0.45547714301895	13		Pyramidal Cell	Deep	0.2371072910492	63.877868763984	0.68
10	9151	0.49477228020647	13		Wide Interneuron	Deep	0.54638837285543	90.584068563781	0.73
11	9825	0.53046111826905	13		Pyramidal Cell	Deep	0	177.6875452202	0.72
12	10573	0.57099708523081	13		Pyramidal Cell	Deep	1.0403858885841	51.893477065797	0.64
13	23988	1.2949926470514	12		Pyramidal Cell	Superficial	1.375687843922	67.077859973621	0.73
14	14668	0.79324736660113	12		Pyramidal Cell	Superficial	0.88628306517589	100.90349759741	0.64
15	4819	0.26181591055071	12		Pyramidal Cell	Deep	0	165.10167525276	0.67
16	20506	1.1073088311978	8		Pyramidal Cell	Superficial	0.87779186579538	100.06498312347	0.73
17	219346	11.839584016308	8		Narrow Interneuron	Superficial	1.8874289934624	83.099631796211	0.41
18	21324	1.1515091307738	8		Pyramidal Cell	Superficial	0.75032826861752	117.44385327333	0.71
19	4473	0.24199979476275	8		Pyramidal Cell	Superficial	0	155.01163688064	0.73
20	15338	0.82805033297849	8		Pyramidal Cell	Superficial	0	143.62071540489	0.71
21	8264	0.4461449648242	8		Pyramidal Cell	Superficial	0.12100677637948	98.708784323149	0.69
22	5313	0.28682653579502	8		Pyramidal Cell	Superficial	0	100.90458742246	0.63
23	14896	0.80424854878111	8		Pyramidal Cell	Superficial	0.26852846401719	114.77487156178	0.72
24	4986	0.26957005109604	8		Pyramidal Cell	Superficial	0	125.43302407852	0.73
25	7868	0.4249198375603	8		Pyramidal Cell	Superficial	0.12709710218607	108.5812946408	0.71
26	7208	0.38981483176265	8		Pyramidal Cell	Superficial	0.13873473917869	139.53679148969	0.73
27	7205	0.389069737767	8		Narrow Interneuron	Superficial	0.13879250520472	64.777557431095	0.25
28	9674	0.52225122496227	8		Pyramidal Cell	Superficial	0	237.77146749861	0.69
29	19478	1.0515304386345	7		Pyramidal Cell	Deep	1.1808193859739	91.486287435783	0.67
30	6743	0.3646168330625	7		Pyramidal Cell	Deep	0.44490582826635	67.048214438976	0.61
31	16724	0.90280257146934	7		Wide Interneuron	Deep	0.17938292274575	60.408201534937	0.62
32	17305	0.93414994322792	6		Pyramidal Cell	Deep	0.34672060098238	149.86451765522	0.7
33	39515	2.1332142900967	6		Pyramidal Cell	Deep	0.73389851954954	108.51479752611	0.55
34	13892	0.74991613511664	6		Pyramidal Cell	Deep	0.64785488050677	72.233870263435	0.71
35	15167	0.82097535910689	6		Pyramidal Cell	Deep	0.85712401925232	97.9042510529	0.69
36	10119	0.54640811693659	6		Pyramidal Cell	Deep	0.098823994465856	86.484910137006	0.69
37	2308	0.12490315506966	6		Pyramidal Cell	Deep	0.43327556325823	92.24007544628	0.72
38	8164	0.44117594648756	6		Pyramidal Cell	Deep	0	226.77982412473	0.5
39	12515	0.67613589357912	6		Pyramidal Cell	Deep	0.87894526568118	73.105561531497	0.73
40	8417	0.45474375876685	6		Pyramidal Cell	Deep	0.47522870381371	77.532472384542	0.73
41	21119	1.1403009428535	5		Pyramidal Cell	Deep	0.75761162933851	63.613243412784	0.73
42	10446	0.56406928698594	5		Pyramidal Cell	Deep	0.09573042312847	106.59324456809	0.73
43	18106	0.97787989869843	5		Pyramidal Cell	Deep	0.88368496630951	69.121443819953	0.73
44	9460	0.51158177746249	5		Wide Interneuron	Deep	0	111.7662828399	0.74
45	8129	0.43886543367867	5		Pyramidal Cell	Deep	0.24603272235207	106.0502257986	0.73
46	5609	0.30376535982989	5		Pyramidal Cell	Deep	0	107.44443700142	0.73
47	5458	0.2950155317867	5		Pyramidal Cell	Deep	0.18321729571272	66.0061505662	0.67
48	5571	0.30129994865002	5		Pyramidal Cell	Deep	0	47.116182200917	0.67
49	13968	0.75428231594209	5		Wide Interneuron	Deep	0.78751431844215	121.47366363795	0.73
50	11734	0.63409585278021	5		Wide Interneuron	Deep	0.085222430543719	104.26211186981	0.73
51	9979	0.54042474433392	5		Pyramidal Cell	Deep	0.10021044192805	130.64769111562	0.72
52	16920	0.91366712615609	5		Pyramidal Cell	Deep	1.3593380614657	75.418867280069	0.7
53	22524	1.2175109073821	4		Wide Interneuron	Superficial	0.044397087551057	88.883054461851	0.73
54	83792	4.5237135065486	4		Narrow Interneuron	Superficial	0.44156960091656	60.563306396556	0.31
55	7163	0.38685408990321	4		Wide Interneuron	Superficial	0	88.398629181133	0.73
56	7569	0.40902286388633	4		Pyramidal Cell	Superficial	0.39635354736425	62.668588352881	0.67
57	13039	0.70395415378045	4		Wide Interneuron	Superficial	0.30677199171716	82.612021087584	0.71
58	16639	0.89914790159704	3		Pyramidal Cell	Deep	0.18029929683274	106.19221782097	0.67
59	9232	0.49879898961003	3		Pyramidal Cell	Deep	0.10831889081456	128.74557456013	0.73
60	7001	0.37800184236079	3		Wide Interneuron	Deep	0	142.66799596406	0.63
61	3710	0.20077625186022	2		Pyramidal Cell	Deep	0.26954177897574	147.88026128255	0.73
62	4407	0.23805036845465	2		Pyramidal Cell	Deep	0	164.89332195189	0.56
63	4823	0.26044321679071	2		Pyramidal Cell	Deep	0	193.19114887429	0.61
64	39509	2.1335200351917	1		Narrow Interneuron	Deep	0.68338859500367	54.350600638242	0.42