Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

---

Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

---

Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140404-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140404-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140404-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140404-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140404-05-postrun.mpg	5	Video	30

---

Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

---

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

---

Analysis tags

Tag	Value	Description

---

Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	63	50071

---

#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	16325	0.74761629185731	16		Pyramidal Cell	Superficial	0	72.808008613048	0.66
2	2858	0.13100478846108	16		Pyramidal Cell	Superficial	0	86.059340374737	0.7
3	139649	6.3911612074341	15		Wide Interneuron	Deep	0.42248780872043	105.07242028434	0.49
4	166227	7.6075211261718	14		Narrow Interneuron	Superficial	0.32485697269397	139.47585175132	0.38
5	7121	0.32624876496734	14		Pyramidal Cell	Superficial	0.14042971492768	77.854881496839	0.72
6	17453	0.79875941993956	14		Pyramidal Cell	Superficial	0.57296739815504	76.419768829142	0.62
7	387980	17.756571189353	13		Narrow Interneuron	Deep	0.81962987782875	70.676148496252	0.37
8	24100	1.102981554796	13		Pyramidal Cell	Deep	1.4522821576763	93.200275893657	0.73
9	12297	0.56355528141043	13		Pyramidal Cell	Deep	0	146.22858354481	0.72
10	4795	0.21956149407352	13		Pyramidal Cell	Deep	0.20855057351408	123.31994681296	0.72
11	9689	0.44366385533487	13		Wide Interneuron	Deep	0.20641965115079	74.672249610771	0.65
12	193259	8.8445373830968	13		Narrow Interneuron	Deep	1.5109257524876	75.662807492007	0.32
13	114577	5.2436838899191	12		Wide Interneuron	Superficial	0.74185918639867	54.94370291111	0.48
14	6835	0.31281576915505	12		Pyramidal Cell	Superficial	0	125.79085097196	0.69
15	4388	0.20099701896182	12		Pyramidal Cell	Superficial	0	106.18174950138	0.49
16	33554	1.5360534459071	11		Wide Interneuron	Superficial	0.41723788519998	70.388215403266	0.48
17	123708	5.6615897710027	11		Wide Interneuron	Superficial	0.10508617065994	86.011805012832	0.56
18	18872	0.8640547325013	11		Wide Interneuron	Superficial	0	97.381926803101	0.72
19	236282	10.813536052742	8		Narrow Interneuron	Deep	0.60944126086625	100.13446999392	0.34
20	12881	0.58980758327758	8		Wide Interneuron	Deep	0.23290117226923	82.367314784881	0.67
21	4830	0.22111383963402	8		Narrow Interneuron	Deep	0	70.416616983842	0.24
22	24506	1.1216173860013	8		Pyramidal Cell	Deep	0.36725699828613	85.75107179726	0.7
23	12271	0.56185440671933	8		Pyramidal Cell	Deep	0.081492950859751	135.18819423795	0.73
24	7620	0.34881801345294	8		Pyramidal Cell	Deep	0	138.56895963246	0.71
25	12888	0.58998255355944	8		Pyramidal Cell	Deep	0	161.11040272327	0.66
26	16582	0.75967429489168	8		Wide Interneuron	Deep	0.060306356289953	194.35046199314	0.63
27	21460	0.98229635341315	8		Pyramidal Cell	Deep	0.69897483690587	101.39247803188	0.71
28	18033	0.82552109851996	8		Pyramidal Cell	Deep	0.33272334054234	73.583901503021	0.7
29	22938	1.0498002410417	8		Pyramidal Cell	Deep	0.39236201935653	120.75092128131	0.7
30	17127	0.78406627717231	8		Pyramidal Cell	Deep	0.17516202487301	74.751336002262	0.69
31	8174	0.37414767543752	8		Wide Interneuron	Deep	0.12233912405187	270.9186004139	0.73
32	4845	0.22235457992689	8		Pyramidal Cell	Deep	0	157.73503963107	0.73
33	7170	0.32834986695888	8		Pyramidal Cell	Deep	0	135.58732567648	0.71
34	15762	0.72144545097599	8		Wide Interneuron	Deep	0.063443725415556	89.750221611259	0.61
35	9998	0.45784983496249	8		Pyramidal Cell	Deep	0	222.57465890968	0.7
36	16762	0.76715743109412	8		Wide Interneuron	Deep	0.29829375969455	155.23532461497	0.73
37	6284	0.28772027055101	8		Narrow Interneuron	Deep	0	269.33768597865	0.13
38	10505	0.48081509000697	8		Wide Interneuron	Deep	0	88.283886544312	0.73
39	10676	0.48866090094254	8		Wide Interneuron	Deep	0.37467216185837	121.20720577331	0.61
40	13478	0.61706190356043	7		Pyramidal Cell	Deep	0.074194984419053	72.294117054877	0.59
41	18402	0.84271682782958	8		Pyramidal Cell	Deep	0.10868383871318	167.70954782716	0.7
42	8790	0.40244427621602	7		Pyramidal Cell	Deep	0.11376564277588	122.85765020368	0.72
43	50099	2.2930927174089	7		Pyramidal Cell	Deep	2.4551388251262	94.033511800387	0.73
44	10345	0.47355732894065	6		Pyramidal Cell	Deep	0.096665055582407	85.972739963533	0.73
45	8751	0.40073337917611	6		Wide Interneuron	Deep	0.45709061821506	147.01346864314	0.73
46	16195	0.74134614333082	6		Wide Interneuron	Deep	0.061747452917567	137.54665607538	0.72
47	11118	0.51011857214811	6		Pyramidal Cell	Deep	0	161.63443352672	0.73
48	13486	0.61728571652529	6		Pyramidal Cell	Deep	0.2966038855109	82.476046114338	0.73
49	21666	0.99165378432529	5		Pyramidal Cell	Deep	0.50770792947475	120.84933825455	0.72
50	8574	0.39262405209127	5		Pyramidal Cell	Deep	0.46652670865407	159.91503085866	0.63
51	25337	1.1597339750513	5		Pyramidal Cell	Deep	0.78935943481864	83.444486647312	0.73
52	30854	1.4122916381775	5		Wide Interneuron	Deep	0.19446425098853	58.591489287137	0.73
53	31434	1.4389101020887	5		Pyramidal Cell	Deep	1.4951962842782	79.424093632332	0.62
54	20703	0.9475900585074	4		Wide Interneuron	Deep	0	302.64959480712	0.69
55	19392	0.8875925952185	4		Pyramidal Cell	Deep	0.6703795379538	79.008743383015	0.63
56	30736	1.407093994664	4		Wide Interneuron	Deep	0.097605413846955	80.399099918025	0.73
57	6969	0.31899078912609	4		Wide Interneuron	Deep	0.14349261013058	67.873016524511	0.68
58	15670	0.71734726136363	4		Wide Interneuron	Deep	0.1914486279515	81.406230994364	0.7
59	40218	1.840615199521	3		Wide Interneuron	Deep	0.29837386244965	63.20000717259	0.7
60	14050	0.64328748125155	3		Wide Interneuron	Deep	0	125.02951531248	0.69
61	13867	0.63471566359732	3		Wide Interneuron	Deep	0.14422730222831	63.109621268057	0.55
62	9741	0.44582224872431	3		Pyramidal Cell	Deep	0.10265886459296	83.322040600079	0.68
63	13266	0.60756849531014	2		Pyramidal Cell	Deep	1.0553294135384	104.27614486238	0.66