Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140405-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140405-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140405-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140405-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140405-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	94	50136

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	22560	1.4114146874052	16		Wide Interneuron	Deep	0.70921985815603	116.13304861028	0.7
2	14723	0.92120179211196	16		Wide Interneuron	Superficial	0.61128846023229	160.27752738051	0.7
3	15819	0.98985237993373	16		Pyramidal Cell	Superficial	0.63215121056957	156.08946542775	0.66
4	11184	0.69959429661004	16		Pyramidal Cell	Deep	0	266.96983003923	0.72
5	4903	0.30675779923884	16		Wide Interneuron	Deep	0	110.61415389091	0.69
6	5353	0.33600287186105	16		Wide Interneuron	Superficial	0	109.28169853977	0.63
7	6275	0.39543096939039	16		Pyramidal Cell	Superficial	0.31872509960159	311.66351196386	0.69
8	4123	0.2580561897168	16		Wide Interneuron	Superficial	0	130.23982521055	0.52
9	3058	0.19140710057	16		Pyramidal Cell	Deep	0.32701111837802	251.37060340251	0.71
10	5900	0.36924020907094	16		Pyramidal Cell	Superficial	0	143.65586529957	0.69
11	10500	0.65684249861798	16		Pyramidal Cell	Superficial	0.19047619047619	197.39539951036	0.72
12	2688	0.16921917977021	16		Pyramidal Cell	Superficial	0	152.86987494602	0.72
13	13016	0.81429181481607	16		Wide Interneuron	Superficial	0	102.46768363278	0.72
14	17335	1.0843984600278	16		Wide Interneuron	Deep	0.057686760888376	136.10013133592	0.67
15	11208	0.70114228577302	15		Pyramidal Cell	Superficial	0.26766595289079	203.59540248279	0.69
16	81807	5.1170606835815	15		Wide Interneuron	Superficial	0.55007517694085	111.66180354427	0.56
17	135424	8.4708593312864	15		Wide Interneuron	Superficial	0.32490548204159	87.233544843261	0.54
18	6157	0.38539122272961	15		Pyramidal Cell	Superficial	0.16241676140978	69.330434472363	0.67
19	6469	0.40463877288754	15		Pyramidal Cell	Superficial	0	178.17442155075	0.69
20	6571	0.41116160016211	15		Wide Interneuron	Superficial	0.1521838380764	56.919207982115	0.66
21	935	0.059171053161337	15		Wide Interneuron	Superficial	0	205.12619189768	0.69
22	239567	14.985246662582	14		Narrow Interneuron	Deep	2.3625958500127	80.366966676836	0.36
23	65338	4.0869280936002	15		Wide Interneuron	Superficial	1.4080626893997	79.708231181552	0.54
24	2715	0.16988324053151	15		Pyramidal Cell	Superficial	0	165.92845526108	0.69
25	9706	0.60725720218945	14		Wide Interneuron	Deep	0.10302905419328	58.128120250801	0.72
26	4925	0.30832330886089	14		Pyramidal Cell	Deep	0	172.57126866716	0.73
27	93611	5.8554292632138	13		Wide Interneuron	Deep	0.010682505261134	136.55480821188	0.52
28	7724	0.48407088118805	13		Wide Interneuron	Deep	0	65.079471505285	0.61
29	3983	0.25024774007929	13		Pyramidal Cell	Deep	0	59.617286326055	0.72
30	7027	0.43963800668253	13		Wide Interneuron	Deep	0	174.14134154196	0.73
31	7619	0.47741932241634	13		Pyramidal Cell	Deep	0.65625410158813	152.67314326109	0.73
32	16341	1.0221674184689	12		Pyramidal Cell	Superficial	0.67315341778349	93.274269318424	0.67
33	3765	0.23567458749029	9		Wide Interneuron	Superficial	0.26560424966799	209.46024712783	0.62
34	3835	0.24030588890635	9		Pyramidal Cell	Superficial	0	84.212180813256	0.73
35	7867	0.49272760794626	8		Pyramidal Cell	Deep	0.1271132579128	129.53668259006	0.7
36	2190	0.13715324750786	8		Pyramidal Cell	Deep	0.45662100456621	162.65928731293	0.69
37	2213	0.13974643511375	8		Pyramidal Cell	Deep	0.9037505648441	102.39783537315	0.69
38	13222	0.82707435598317	8		Pyramidal Cell	Deep	0	148.33896343128	0.61
39	5227	0.32697286659111	8		Pyramidal Cell	Deep	0	247.51156116135	0.69
40	3280	0.20530965379419	8		Pyramidal Cell	Deep	0	149.21439975326	0.72
41	2914	0.18254024711765	8		Pyramidal Cell	Deep	0.34317089910776	127.2146548813	0.65
42	13607	0.85233074766385	8		Pyramidal Cell	Deep	0.073491585213493	260.7667215387	0.71
43	44215	2.7656764274236	8		Wide Interneuron	Deep	0.54280221644238	99.724480079536	0.72
44	13773	0.86219361022325	8		Wide Interneuron	Deep	0	201.40613959127	0.73
45	13310	0.83270819741348	8		Wide Interneuron	Deep	0.15026296018032	210.55538505185	0.71
46	9101	0.56933468665792	8		Pyramidal Cell	Deep	0	154.78917789246	0.69
47	10479	0.65586790396062	8		Wide Interneuron	Deep	0	137.62025353597	0.73
48	5234	0.32770931902902	8		Pyramidal Cell	Deep	0	143.6793292729	0.72
49	12243	0.76593129827729	8		Wide Interneuron	Deep	0.24503798088704	120.95139559401	0.71
50	25527	1.5969591975048	7		Wide Interneuron	Deep	0.58761311552474	47.827390589349	0.52
51	14764	0.92407774377969	7		Pyramidal Cell	Deep	0.40639393118396	164.92582016308	0.71
52	7451	0.46622065245487	7		Wide Interneuron	Deep	0.13421017313112	102.8337406134	0.73
53	3582	0.22470527052611	7		Pyramidal Cell	Deep	0	141.80160225221	0.7
54	1817	0.11375890225627	7		Wide Interneuron	Deep	0	131.09119647276	0.73
55	3875	0.24270110711664	7		Pyramidal Cell	Deep	0.25806451612903	143.08090648599	0.72
56	7278	0.45563457273377	7		Pyramidal Cell	Deep	0	113.84810109929	0.73
57	9944	0.62204305525054	7		Wide Interneuron	Deep	0.1005631536605	121.61825962367	0.73
58	13563	0.84906513471436	7		Pyramidal Cell	Deep	0	114.33018881795	0.67
59	6275	0.39318926268861	7		Pyramidal Cell	Deep	0	149.03391393199	0.67
60	8741	0.54681451844782	7		Pyramidal Cell	Deep	0	232.02455025747	0.68
61	8213	0.51399756720126	7		Wide Interneuron	Deep	0.73054912942895	114.26430406814	0.67
62	13757	0.86065651626043	7		Pyramidal Cell	Deep	0	158.09710622412	0.73
63	10385	0.64974815282966	6		Narrow Interneuron	Deep	0	59.66749910658	0.34
64	9828	0.61484408925847	6		Wide Interneuron	Deep	0.61050061050061	58.978340918234	0.68
65	17145	1.0726942460643	6		Pyramidal Cell	Deep	1.5748031496063	85.834225462008	0.67
66	8891	0.55640069092813	6		Pyramidal Cell	Deep	0	133.58243834465	0.73
67	223038	13.951245090358	5		Wide Interneuron	Deep	0.45732117397035	75.778531784525	0.54
68	118910	7.4378638052327	5		Wide Interneuron	Deep	1.4380624001346	75.766163433366	0.45
69	12691	0.79413603841936	5		Wide Interneuron	Deep	0	174.26901443714	0.73
70	8390	0.5250347208934	5		Pyramidal Cell	Deep	0.119189511323	78.09449918387	0.73
71	4466	0.27954327798613	4		Pyramidal Cell	Superficial	0.44782803403493	69.529402422107	0.69
72	8680	0.54317109807613	5		Pyramidal Cell	Deep	0	168.47281119404	0.71
73	6414	0.40138090802236	4		Pyramidal Cell	Superficial	0.15590894917368	72.957709611718	0.61
74	2791	0.17524139470727	4		Wide Interneuron	Superficial	0.71658903618775	99.583178605014	0.71
75	10286	0.64368236878366	4		Pyramidal Cell	Superficial	0.097219521679953	109.93170808756	0.73
76	11374	0.71172650736927	4		Pyramidal Cell	Superficial	0	86.172759021561	0.73
77	5535	0.3477526187013	4		Pyramidal Cell	Superficial	0	172.77675128482	0.72
78	97153	6.0771134738728	4		Wide Interneuron	Superficial	2.7894146346484	77.302935168618	0.44
79	75280	4.7089287622742	3		Pyramidal Cell	Deep	1.9128586609989	69.858020055106	0.54
80	21746	1.3604067156897	3		Pyramidal Cell	Deep	0.13795640577577	259.06311254996	0.66
81	12353	0.77298548815329	3		Pyramidal Cell	Deep	0.97142394560026	177.6733536305	0.63
82	20020	1.2524647969182	3		Pyramidal Cell	Deep	0.4995004995005	103.91789227189	0.68
83	38403	2.4026402202523	2		Pyramidal Cell	Deep	0.3124755878447	120.77845289803	0.67
84	23893	1.4948138957482	2		Pyramidal Cell	Deep	0.79521198677437	67.765741937101	0.62
85	6058	0.3791153098302	2		Pyramidal Cell	Deep	0.16507098052162	87.816667046285	0.63
86	10025	0.62732656022561	2		Pyramidal Cell	Deep	0.19950124688279	202.63461420419	0.6
87	14260	0.89224953417582	2		Wide Interneuron	Deep	0.35063113604488	78.913464226798	0.7
88	15607	0.97649888104628	2		Pyramidal Cell	Deep	0.25629525213045	107.29012609528	0.63
89	10749	0.67255262945663	2		Pyramidal Cell	Deep	2.4188296585729	76.833144569811	0.61
90	12212	0.76402554322829	2		Pyramidal Cell	Deep	0.32754667540124	95.789628738034	0.58
91	4889	0.30591125603939	1		Wide Interneuron	Deep	0	103.01782783565	0.73
92	34581	2.1631493044327	1		Wide Interneuron	Deep	0.028917613718516	157.07386625982	0.63
93	94225	5.8939611921704	1		Pyramidal Cell	Deep	0.4669673653489	72.057102916897	0.51
94	26832	1.6784388626955	1		Wide Interneuron	Deep	0.14907573047108	82.168351358212	0.56