Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
Basler, acA1300-200uc	Rat09-20140407-01-sleep.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140407-02-run.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140407-03-sleep.mpg	3	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	78	50200

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	10266	0.7373759836362	16		Pyramidal Cell	Superficial	0	321.79723567144	0.71
2	8815	0.63285953297494	16		Pyramidal Cell	Superficial	0.11344299489507	199.15308085231	0.7
3	17974	1.2904200950271	16		Pyramidal Cell	Superficial	0	322.21139279749	0.66
4	149270	10.715479846933	16		Narrow Interneuron	Superficial	1.5408320493066	50.849015072255	0.41
5	8006	0.57520016099857	16		Pyramidal Cell	Superficial	0	130.79094953753	0.66
6	12526	0.89957331814118	16		Pyramidal Cell	Superficial	0	230.38810800475	0.72
7	3726	0.26772596283231	16		Wide Interneuron	Superficial	0.26838432635534	119.92661727852	0.68
8	9368	0.6725115250155	16		Wide Interneuron	Superficial	0.1067463706234	145.02848983086	0.56
9	6304	0.45281952415276	16		Pyramidal Cell	Superficial	0	407.76286988933	0.73
10	10119	0.72640114509363	16		Wide Interneuron	Superficial	0	207.62031975381	0.65
11	2626	0.18851766809517	16		Pyramidal Cell	Superficial	0	226.90558129077	0.71
12	2763	0.19857385807499	16		Pyramidal Cell	Superficial	0.36192544335867	147.17078584173	0.72
13	4352	0.31320409185745	16		Pyramidal Cell	Superficial	0	115.91426719355	0.68
14	7238	0.52029246834349	16		Pyramidal Cell	Superficial	0.1381597126278	319.27392891695	0.61
15	28183	2.023235055939	15		Wide Interneuron	Superficial	1.2064010218926	92.613427850327	0.67
16	50152	3.600209279034	15		Wide Interneuron	Superficial	0.4386664539799	108.80456378449	0.72
17	4098	0.29500196696773	15		Wide Interneuron	Deep	0	147.13537700717	0.64
18	1528	0.11057043799118	15		Pyramidal Cell	Superficial	0	180.98310069116	0.65
19	10022	0.71975972119459	15		Pyramidal Cell	Deep	0.19956096587507	72.071493754757	0.64
20	10855	0.78038018814344	15		Wide Interneuron	Superficial	0.46061722708429	100.4692385581	0.7
21	5048	0.36252642742608	15		Pyramidal Cell	Superficial	0.79239302694136	121.92533042831	0.69
22	1112	0.079914164713111	15		Pyramidal Cell	Deep	0	185.36976411356	0.58
23	7261	0.52206715152548	15		Pyramidal Cell	Superficial	0.13772207684892	136.78579470707	0.73
24	22305	1.601515972546	14		Wide Interneuron	Superficial	0.58282896211612	91.571119187028	0.7
25	6086	0.43690241628393	14		Wide Interneuron	Superficial	0	219.87192267174	0.73
26	6450	0.46360040686722	14		Pyramidal Cell	Superficial	0.46511627906977	133.30600048485	0.71
27	17102	1.2276786607601	13		Pyramidal Cell	Deep	0.29236346626126	118.21935856013	0.54
28	7810	0.56102412605237	13		Wide Interneuron	Deep	0.1280409731114	97.627369641529	0.71
29	6349	0.4562722302232	13		Wide Interneuron	Deep	0.15750511891636	156.00795963158	0.73
30	9157	0.65764791286723	13		Wide Interneuron	Deep	0	147.98678766649	0.73
31	1485	0.10671961415994	10		Wide Interneuron	Superficial	0	143.41089510192	0.65
32	98390	7.0631909067221	13		Wide Interneuron	Deep	1.2196361418843	64.459011885557	0.45
33	2210	0.15974248701538	10		Pyramidal Cell	Superficial	0.45248868778281	143.4947128604	0.69
34	5222	0.37511642428192	10		Pyramidal Cell	Superficial	0.38299502106473	95.124576306665	0.72
35	26155	1.8776488003472	9		Pyramidal Cell	Superficial	0	193.45405043065	0.65
36	6855	0.49226059526212	9		Pyramidal Cell	Superficial	0.58351568198395	101.80632177756	0.62
37	10947	0.78601206975492	9		Pyramidal Cell	Superficial	0.36539691239609	105.31491518166	0.7
38	8449	0.6075181838501	8		Pyramidal Cell	Superficial	0	340.3837732355	0.73
39	11733	0.84248596778515	8		Pyramidal Cell	Superficial	0	187.6674104306	0.68
40	1635	0.11746657362021	8		Pyramidal Cell	Superficial	0	201.91917096944	0.67
41	15407	1.1061048664303	8		Wide Interneuron	Superficial	0.45433893684689	81.748457581913	0.69
42	16097	1.1556501102983	8		Wide Interneuron	Superficial	0.12424675405355	213.22979867464	0.68
43	5188	0.37255165504457	8		Pyramidal Cell	Superficial	0.19275250578258	134.78300697922	0.69
44	4583	0.32970660741358	8		Wide Interneuron	Superficial	0	325.75456161508	0.68
45	6835	0.49087546184307	8		Wide Interneuron	Superficial	0.29261155815655	74.204235786493	0.68
46	14425	1.0357034886529	8		Pyramidal Cell	Superficial	0.20797227036395	108.83936591777	0.67
47	4932	0.35441522321749	7		Wide Interneuron	Deep	0	143.28843096273	0.73
48	3377	0.24260869478383	7		Wide Interneuron	Deep	0	126.12943705454	0.71
49	2089	0.15015330102167	7		Pyramidal Cell	Deep	0.47869794159885	266.42693253572	0.66
50	6781	0.48683473698452	7		Pyramidal Cell	Deep	0.14747087450229	114.37407018439	0.61
51	8847	0.63593025339524	7		Pyramidal Cell	Deep	0.1130326664406	237.75686458284	0.69
52	13301	0.95507252257501	7		Pyramidal Cell	Deep	0	128.43968298965	0.66
53	8126	0.58387617884599	7		Pyramidal Cell	Deep	0	95.883096982522	0.73
54	3530	0.25404192761229	7		Pyramidal Cell	Deep	0	120.37896327234	0.73
55	1824	0.13099545891027	7		Pyramidal Cell	Deep	0	266.20537700998	0.72
56	17539	1.2592065524058	7		Pyramidal Cell	Deep	0.51314214037288	107.40351993637	0.72
57	14656	1.0520974335115	7		Wide Interneuron	Deep	0.068231441048035	77.706837976146	0.73
58	21452	1.5401400047715	7		Pyramidal Cell	Deep	1.2120082043632	73.769038539035	0.68
59	15078	1.0826211390803	7		Wide Interneuron	Deep	0.39793076004775	110.43183317312	0.74
60	7998	0.57462824675961	7		Pyramidal Cell	Deep	0.25006251562891	167.51932941616	0.69
61	218977	15.719191863251	6		Narrow Interneuron	Deep	3.4432839978628	64.519525006528	0.36
62	355500	25.519401474921	5		Narrow Interneuron	Superficial	4.0450070323488	100.66815897043	0.3
63	79276	5.6910962803719	5		Wide Interneuron	Superficial	1.5010848175993	83.520466747283	0.43
64	9972	0.71591023228017	5		Pyramidal Cell	Deep	0	173.40389524325	0.71
65	3165	0.22724838121339	5		Pyramidal Cell	Superficial	2.2116903633491	261.49689322846	0.66
66	6622	0.4755275665797	5		Wide Interneuron	Superficial	0	91.581057761343	0.72
67	5941	0.42694675485289	4		Wide Interneuron	Deep	0.33664366268305	58.704929625877	0.68
68	5012	0.36013819577525	4		Pyramidal Cell	Superficial	0	287.59537148291	0.64
69	6707	0.48158086735436	4		Pyramidal Cell	Superficial	0	244.16133063599	0.6
70	5849	0.42041950887548	4		Wide Interneuron	Deep	0.17096939647803	136.06367649061	0.72
71	7430	0.53378203592479	4		Pyramidal Cell	Superficial	0	125.56782924422	0.63
72	9317	0.66900287275951	3		Pyramidal Cell	Superficial	0.21466137168617	131.35502348194	0.68
73	44434	3.1897565756443	3		Wide Interneuron	Superficial	0.29256875365711	203.46097927675	0.65
74	17679	1.2691180923215	3		Pyramidal Cell	Superficial	0.22625714124102	228.18321122423	0.68
75	16252	1.1666645573574	3		Pyramidal Cell	Superficial	0.43071621954221	156.40330643919	0.65
76	2637	0.18943398440077	3		Wide Interneuron	Superficial	0	191.58330339618	0.63
77	21798	1.5649082807637	3		Pyramidal Cell	Superficial	0.32113037893385	168.75990312921	0.64
78	5135	0.36890791768852	3		Pyramidal Cell	Superficial	0.38948393378773	116.90137084578	0.65