Details for DC_M01_20201006

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  • Date & time:

  • Animal subject: DC_M01

  • Investigator: Mihály Vöröslakos

  • Experimenters: Mihály Vöröslakos

  • Project: Metal microdrive and head cap system for silicon probe recovery in freely moving rodent

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2020-12-19 17:37:35 by Peter Petersen
    Updated: 2020-12-19 17:52:54 by Peter Petersen

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
pre_homecage_201006_090834 Homecage_Sleep Homecage Homecage_Mouse
stimulation_201006_102655 Electrical stimulation
post_homecage_201006_114734 Homecage_Sleep Homecage Homecage_Mouse

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit

Intan Technologies, RHD2000 USB interface board (256ch) 20000 343272000 32 4 0.195

Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label

1 21, 24, 28, 26, 22
2 29, 17, 32, 31
3 16, 4, 1, 13, 15, 3, 2
4 12, 8, 5, 9, 11, 7, 6, 10
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description


Equipment

File names

Epoch

Type

Framerate

Notes


Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups

ACA – Anterior cingulate area (View in Atlas) 32

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Bad 14, 18, 19, 20, 23, 25, 27, 30

Analysis tags

Tag

Value

Description


Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID

KiloSort Phy Kilosort_2020-10-07_100802 Yes 0 65759

Spike sorted units

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