{"id":17232,"date":"2020-09-25T03:19:37","date_gmt":"2020-09-25T07:19:37","guid":{"rendered":"https:\/\/buzsakilab.com\/wp\/?page_id=17232"},"modified":"2020-11-20T15:58:00","modified_gmt":"2020-11-20T20:58:00","slug":"matlab-database-toolset","status":"publish","type":"page","link":"https:\/\/buzsakilab.com\/wp\/matlab-database-toolset\/","title":{"rendered":"MATLAB database toolset"},"content":{"rendered":"

We have developed a MATLAB toolset for interacting with the database. The code is shared on GitHub in the CellExplorer repository: github.com\/petersenpeter\/CellExplorer<\/a>. The first functions below give reading access and they are sufficient for public access.<\/p>\n

db_example.m<\/a>: script containing a few examples for interacting with the database<\/p>\n

gui_db_sessions.m<\/a>: Shows a graphical interface allowing the user to select a number of sessions for processing.<\/p>\n

db_set_session.m<\/a>: loads session metadata from the database and generates the local path to the data.<\/p>\n

db_load_table.m<\/a>: allows you to query individual database tables, e.g. sessions, projects, silicon probes.<\/p>\n

db_load_sessions.m<\/a>: the metadata will be loaded from the database for multiple sessions based on user inputs (search terms).<\/p>\n

For contributors and collaborators<\/h3>\n

db_credentials.m<\/a>: provide your credentials in this file<\/p>\n

db_local_repositories.m<\/a>: provide your local repository paths in this file.<\/p>\n

db_create_animal.m<\/a>: creates a new animal subject in the database<\/p>\n

db_create_session.m<\/a>: creates a new session in the database.<\/p>\n

db_upload_session.m<\/a>: Update an existing session.<\/p>\n

db_submit_cells.m<\/a>: submit and update cells in the database.<\/p>\n","protected":false},"excerpt":{"rendered":"

We have developed a MATLAB toolset for interacting with the database. The code is shared on GitHub in the CellExplorer repository: github.com\/petersenpeter\/CellExplorer. The first functions below give reading access and they are sufficient for public access. db_example.m: script containing a few examples for interacting with the database gui_db_sessions.m: Shows a graphical interface allowing the user to select a number of sessions for processing. db_set_session.m: loads session metadata from the database and generates the local path […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"_links":{"self":[{"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/pages\/17232"}],"collection":[{"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/comments?post=17232"}],"version-history":[{"count":9,"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/pages\/17232\/revisions"}],"predecessor-version":[{"id":17258,"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/pages\/17232\/revisions\/17258"}],"wp:attachment":[{"href":"https:\/\/buzsakilab.com\/wp\/wp-json\/wp\/v2\/media?parent=17232"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}