Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch)	dat	20000	326665000	128	14	0.195

---

Implanted probes

MS22 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS22 : #2 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2	60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3	38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4	40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5	27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6	7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7	17, 20, 19, 18
8	114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9	124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10	102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11	104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12	91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13	71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14	81, 84, 83, 82

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
	aux	4	Temperature	MS temperature probe
	adc	1	WheelPosition	Running wheel
	dig	1	OptitrackSync	TTL sync
	dig	2	BaslerSync	TTL sync
	dig	5	ArduinoRemoteCh1	Remote Button A
	dig	6	ArduinoRemoteCh2	Remote Button B
	dig	7	ArduinoRemoteCh3	Remote Button C
	dig	8	ArduinoRemoteCh4	Remote Button D
	aux	1	AccelerometerX	Head mounted accelerometer
	aux	2	AccelerometerY	Head mounted accelerometer
	aux	3	AccelerometerZ	Head mounted accelerometer
			ch_opto_on
			ch_opto_off

---

Equipment	File names	Epoch	Type	Framerate	Notes
OptiTrack, Flex 13	Take 2018-06-28 02.57.18 PM.csv	2	Head position	120
Basler, acA1300-200uc	Basler acA1300-200uc (21965891)_20180628_145722672.avi	2	Video	10

---

Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
CA1 – Field CA1 (View in Atlas)	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

---

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Theta	1
Ripple	1
RippleNoise	50
Cortical
GammaPhaseCoupling	2

---

Analysis tags

Tag	Value	Description
OptiTracktracking_onset	5,-5,0
cooling_onsets
cooling_offsets
time_frame

---

Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
KiloSort	Phy	Kilosort_2018-11-26_180553		Peter Petersen		Yes	67	18448

---

#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	27481	1.6837786649938	10	CA1	Pyramidal Cell	Deep	3.8208216586005	105.42952947413	0.7	40.775399289988
2	24154	1.4789652100345	10	CA1	Pyramidal Cell	Deep	2.9808727332947	160.50735258786	0.71	35.7825438093
3	12749	0.7811531356364	11	CA1	Pyramidal Cell	Deep	1.8825005882814	87.631205338952	0.71	36.027183675529
4	38440	2.354031405547	10	CA1	Pyramidal Cell	Deep	2.471383975026	187.82287712366	0.72	41.526093616324
5	189563	11.606117409547	3	CA1	Narrow Interneuron	Deep	2.4477350537816	153.58839687929	0.33	0
6	36941	2.2619081933523	4	CA1	Pyramidal Cell	Deep	11.992095503641	117.45217397751	0.7	36.595080204633
7	2316	0.1477352756346	5	CA1	Pyramidal Cell	Deep	0	382.3452540525	0.69	46.33919116911
8	30962	1.8959008030801	4	CA1	Pyramidal Cell	Deep	2.8421936567405	145.64369018902	0.67	32.890130840678
9	29812	1.8258040093038	4	CA1	Pyramidal Cell	Deep	11.80732590903	105.67204664621	0.71	26.161378276788
10	45313	2.7743348003782	10	CA1	Pyramidal Cell	Deep	9.4454130161322	221.21062248669	0.73	37.69652782616
11	22571	1.3820519578487	5	CA1	Pyramidal Cell	Deep	10.145762261309	143.36312598156	0.72	29.204523111855
12	20914	1.2810768013444	11	CA1	Wide Interneuron	Deep	0.43033374772879	95.196461611038	0.47	42.251225712099
13	16128	0.98971253710992	11	CA1	Pyramidal Cell	Deep	4.0922619047619	105.38714601589	0.72	31.042553853102
14	27899	1.7109890922284	10	CA1	Pyramidal Cell	Deep	0.3584357862289	108.67341976145	0.68	60.780194290775
15	566899	34.708351799283	10	CA1	Narrow Interneuron	Deep	0.098783028370133	264.60226194372	0.21	0
16	15296	0.93788404572753	11	CA1	Wide Interneuron	Deep	1.3729079497908	83.276922508017	0.43	37.032734603987
17	92158	5.6430015602785	11	CA1	Pyramidal Cell	Deep	11.143905032661	115.44908989525	0.71	59.336273289395
18	49931	3.0577003350607	5	CA1	Pyramidal Cell	Deep	3.9654723518455	162.74775476369	0.73	48.596984290907
19	34369	2.1045199300346	5	CA1	Pyramidal Cell	Deep	8.5833163606739	151.34533682924	0.71	32.501263795451
20	15838	0.96989493103962	4	CA1	Pyramidal Cell	Deep	0.44197499684304	343.78435908403	0.73	26.815597969669
21	5656	0.42740649057638	9	CA1	Narrow Interneuron	Deep	2.1216407355021	142.81008564177	0.31	0
22	24842	1.5218456852825	5	CA1	Pyramidal Cell	Deep	10.224619595846	329.78689285759	0.73	19.986690469691
23	32949	2.8070469939742	8	CA1	Wide Interneuron	Superficial	0.4552490212146	114.23498033765	0.49	0
24	44892	2.7494376673597	6	CA1	Narrow Interneuron	Superficial	0.15592978704446	118.33066880237	0.26	0
25	50146	3.0707647873933	4	CA1	Pyramidal Cell	Deep	20.938858533083	257.90091349004	0.72	28.471280403498
26	400621	24.528031347263	1	CA1	Narrow Interneuron	Deep	0.052418620092307	108.99213302032	0.38	0
27	11704	0.71691904725489	3	CA1	Pyramidal Cell	Deep	2.0505809979494	328.67915883714	0.71	34.455248896217
28	14939	0.91527286775318	12	CA1	Wide Interneuron	Deep	3.1461275855144	221.84485522662	0.7	34.427567356911
29	2877	0.17768258992119	11	CA1	Narrow Interneuron	Deep	0	106.645512236	0.37	28.668223672484
30	7304	0.48223455874412	11	CA1	Narrow Interneuron	Deep	0.41073384446878	100.28254996763	0.43	57.314985426227
31	7852	0.48103186652941	6	CA1	Pyramidal Cell	Superficial	0.63678043810494	87.019532552021	0.48	67.10359700941
32	52689	3.2269716697225	4	CA1	Narrow Interneuron	Deep	0.34162728463247	138.8212943605	0.32	54.311781675196
33	2149	0.13170501602844	11	CA1	Wide Interneuron	Deep	0	69.53311855647	0.49	25.371626631071
34	4705	0.2883056320591	10	CA1	Narrow Interneuron	Deep	0.2125398512221	86.736206253619	0.36	51.207908923959
35	2370	0.14518258678216	11	CA1	Narrow Interneuron	Deep	0	97.358055411791	0.44	23.459535148992
36	9327	0.5712946961918	10	CA1	Pyramidal Cell	Deep	1.8226653800793	92.040656334455	0.69	43.389820244605
37	10241	0.62754542598417	1	CA1	Pyramidal Cell	Deep	2.6364612830778	156.41947260714	0.73	102.79274122491
38	2569	0.15774068768272	11	CA1	Narrow Interneuron	Deep	0	101.89786745422	0.41	25.863770637609
39	21559	1.3203655782941	12	CA1	Pyramidal Cell	Deep	7.6534162066886	115.92683319163	0.67	35.372552868796
40	10761	0.66459997546211	11	CA1	Pyramidal Cell	Deep	0.27878449958182	109.41060827444	0.67	50.716008020681
41	2758	0.16910719424526	11	CA1	Narrow Interneuron	Deep	0	95.321918930437	0.42	24.818338539699
42	12056	0.7382871751621	11	CA1	Pyramidal Cell	Deep	5.2256138022561	105.31929227877	0.7	31.780607242896
43	5522	0.338230277267	5	CA1	Pyramidal Cell	Deep	0	110.99961608068	0.73	38.814423422239
44	1972	0.12080633104569	10	CA1	Narrow Interneuron	Deep	0	74.064776306483	0.44	30.393350865445
45	4475	0.27409507312544	3	CA1	Wide Interneuron	Deep	0	115.02268615296	0.48	49.295148817017
46	4745	0.29112905830916	11	CA1	Narrow Interneuron	Deep	0.21074815595364	91.220284839099	0.45	29.149580442777
47	3528	0.21620631686344	5	CA1	Pyramidal Cell	Deep	0.28344671201814	298.27839970881	0.7	26.373512720797
48	2714	0.16632176145899	11	CA1	Narrow Interneuron	Deep	0	90.972059725073	0.4	33.164405410125
49	1358	0.095956449282242	10	CA1	Pyramidal Cell	Deep	0	188.06084528162	0.74	36.023238477797
50	13147	0.8051566057923	5	CA1	Pyramidal Cell	Deep	3.0425192059025	161.74796311089	0.73	20.316812774342
51	3416	0.20957233544067	11	CA1	Narrow Interneuron	Deep	0	105.31663950878	0.38	27.879122328967
52	1273	0.078026523262457	3	CA1	Unknown	Deep	0.78554595443833	112.49282762982	0.36	13.369307543439
53	18024	1.2341805227579	8	CA1	Narrow Interneuron	Superficial	2.8295605858855	119.60933919622	0.45	106.82097420438
54	5833	0.35754942830448	3	CA1	Narrow Interneuron	Deep	0.51431510372021	76.759714768974	0.45	41.320545174868
55	4560	0.2792716292141	5	CA1	Pyramidal Cell	Deep	5.9210526315789	102.41036923275	0.71	24.576003127282
56	3931	0.24113806419061	11	CA1	Pyramidal Cell	Deep	0.50877639277538	80.51503183545	0.67	27.035033154546
57	1438	0.091424584132343	4	CA1	Pyramidal Cell	Deep	0	184.16155272879	0.73	26.094287104033
58	21543	1.3194819880189	2	CA1	Narrow Interneuron	Deep	0.092837580652648	101.6125895584	0.43	0
59	6514	0.40862302221502	11	CA1	Pyramidal Cell	Deep	5.5265581823764	93.175202678647	0.74	36.011718571542
60	19344	1.1845141709525	12	CA1	Unknown	Deep	3.2051282051282	98.880953338181	0.69	33.834659794892
61	68304	4.1846995159493	5	CA1	Narrow Interneuron	Deep	0.98090887795737	138.87965882002	0.2	68.829246894627
62	732	0.054479086474137	4	CA1	Pyramidal Cell	Deep	0	231.30096157899	0.69	37.624757434414
63	34799	2.1313287814274	3	CA1	Pyramidal Cell	Deep	7.9312623925975	126.61962477312	0.72	30.079330880337
64	33425	2.0466835255423	12	CA1	Pyramidal Cell	Deep	8.2273747195213	117.44414981087	0.72	46.766722581779
65	50381	3.085095076925	3	CA1	Pyramidal Cell	Deep	9.9243762529525	115.42290744271	0.72	40.653426391195
66	54610	3.3436542201837	4	CA1	Narrow Interneuron	Deep	0.54934993590917	135.72036232072	0.32	50.953321062271
67	228811	14.009322443621	5	CA1	Narrow Interneuron	Deep	4.2305658381809	206.27042327738	0.31	4759.0853475822