Details for Peter_MS14_180122_163606_concat

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  • Date & time: 2018-01-22, 16:36:06

  • Animal subject: MS14

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Peter, PeterSetup_DataDrive3

  • Created: 2018-12-06 16:43:39 by Peter Petersen ADMIN
    Updated: 2020-06-26 18:03:07 by Peter Petersen ADMIN

  • Notes:
    recordingID = 106

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS14_180122_163606 Homecage_Sleep Homecage Homecage_Rat 5086.116
Peter_MS14_180122_181736 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 8285.724
Peter_MS14_180122_191235 Homecage_Sleep Homecage Homecage_Rat 17268.804

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 345376000 128 8 0.195

Implanted probes

MS22 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS22 : #2 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 58, 51, 55, 62, 52, 57, 61, 49, 56, 64, 50, 60, 63, 54, 53, 59
2 43, 37, 42, 48, 35, 45, 44, 34, 41, 40, 33, 46, 36, 38, 39, 47
3 24, 18, 21, 27, 22, 23, 29, 26, 19, 32, 30, 25, 31, 17, 20, 28
4 9, 4, 8, 13, 3, 10, 14, 2, 7, 15, 1, 11, 16, 5, 6, 12
5 122, 115, 119, 126, 116, 121, 125, 113, 120, 128, 114, 124, 127, 118, 117, 123
6 107, 101, 106, 112, 99, 109, 108, 98, 105, 104, 97, 110, 100, 102, 103, 111
7 88, 82, 85, 91, 86, 87, 93, 90, 83, 96, 94, 89, 95, 81, 84, 92
8 73, 68, 72, 77, 67, 74, 78, 66, 71, 79, 65, 75, 80, 69, 70, 76
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
Intan Technologies, RHD2000 USB interface board (256ch) Take 2018-06-29 03.22.42 PM.csv 2 Head position 120
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64
CTX – Cerebral cortex (View in Atlas) 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 9 4
Ripple 9 4

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2018-01-23_194456 Peter Petersen Yes 99 21955

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 29138 1.6873886746147 4 CA1 Pyramidal Cell Superficial 4.5988056833002 92.126433121269 0.57 39.313759355154
2 23212 1.3457890403265 4 CA1 Pyramidal Cell Deep 3.4895743580906 84.977393496162 0.66 49.703187092353
3 78712 4.559019998362 1 CA1 Pyramidal Cell Deep 18.662973879459 161.0874172785 0.71 74.17044327494
4 25998 1.5057349458215 2 CA1 Pyramidal Cell Deep 3.1540887760597 74.950114398099 0.6 56.48490650134
5 12482 0.7232070670112 4 CA1 Pyramidal Cell Deep 1.1216151257811 224.80573564826 0.71 58.348930903926
6 9202 0.53388643240565 4 CA1 Pyramidal Cell Deep 1.5214083894805 157.20198200503 0.72 40.941897081924
7 17631 1.0222709297318 1 CA1 Pyramidal Cell Superficial 5.4449549089672 70.818029290833 0.61 59.453857800262
8 15624 0.90655190282787 6 CTX Pyramidal Cell Deep 1.4720942140297 125.1006220055 0.74 73.127534378499
9 566116 32.782678747535 6 CTX Narrow Interneuron Deep 0.33915310643048 178.37702777902 0.27 0
10 25705 1.4888797120817 3 CA1 Pyramidal Cell Deep 3.7735849056604 93.954562145964 0.66 42.34328027446
11 21645 1.2538485424124 3 CA1 Pyramidal Cell Deep 1.986601986602 225.65702037023 0.72 43.053135150692
12 3956 0.23424043484499 3 CA1 Pyramidal Cell Superficial 0 205.25067130014 0.63 60.21193567984
13 6559 0.38055039481103 2 CA1 Pyramidal Cell Deep 0 238.32861995575 0.72 51.55179996521
14 11510 0.6672550201817 3 CA1 Pyramidal Cell Deep 0.95569070373588 185.64641209979 0.69 47.556386005879
15 24374 1.4119508214992 4 CA1 Pyramidal Cell Superficial 4.3078690407812 114.54419296968 0.65 75.202769909032
16 32617 1.8898345085068 4 CA1 Pyramidal Cell Deep 4.6294876904682 103.09235618476 0.72 63.624012890141
17 80528 4.6639447754142 7 CTX Narrow Interneuron Deep 0.037254122789589 169.90073382833 0.21 80.814269337479
18 2367 0.13846092289967 4 CA1 Pyramidal Cell Deep 0 537.83804377087 0.69 84.090918404732
19 6672 0.38693123627351 4 CA1 Pyramidal Cell Superficial 4.1966426858513 183.67658229285 0.72 38.907994133838
20 3733 0.21677044457339 4 CA1 Pyramidal Cell Superficial 0.803643182427 212.85873902597 0.65 49.858304289263
21 7253 0.42071191131797 4 CA1 Pyramidal Cell Deep 2.6196056804081 307.06521698046 0.69 32.750049830912
22 26341 1.5256733374452 3 CA1 Pyramidal Cell Deep 2.1639269579743 201.51472567255 0.72 80.65528684798
23 8804 0.51152471159671 3 CA1 Pyramidal Cell Deep 0 419.87964107466 0.71 79.983792750856
24 46277 2.681974687594 2 CA1 Pyramidal Cell Deep 12.20908874819 134.34857010578 0.66 64.397500042643
25 31416 1.8218684954199 2 CA1 Pyramidal Cell Superficial 2.5783040488923 179.52553566472 0.69 56.087473298286
26 1083 0.063846709039069 2 CA1 Pyramidal Cell Deep 0 559.20743231313 0.7 113.01556742809
27 2421 0.14142030727794 2 CA1 Pyramidal Cell Deep 0 509.8963695818 0.64 70.875914831688
28 52064 3.0159147546226 2 CA1 Pyramidal Cell Deep 10.333435771358 175.36405296366 0.72 57.896596764105
29 23737 1.3760763107214 2 CA1 Pyramidal Cell Deep 4.8447571302186 223.18412357708 0.68 37.196904453844
30 10334 0.60672295533894 2 CA1 Pyramidal Cell Deep 0.19353590090962 355.97224077835 0.58 90.152906251456
31 1346 0.079558517609666 2 CA1 Pyramidal Cell Deep 0 708.52315406198 0.73 108.17344606738
32 154244 8.9320565707301 4 CA1 Wide Interneuron Superficial 0.07131557791551 143.14607722515 0.66 272.41051048966
33 9012 0.52272638969184 1 CA1 Pyramidal Cell Superficial 0.44385264092321 130.47922535678 0.62 66.20619565698
34 129949 7.5251576149008 3 CA1 Pyramidal Cell Deep 0.60023547699482 185.57433730651 0.71 94.942367143457
35 3541 0.20531564881985 3 CA1 Pyramidal Cell Deep 1.129624399887 409.57458663546 0.71 52.064308615476
36 3508 0.20387976272359 3 CA1 Pyramidal Cell Deep 0 329.69509452307 0.71 73.939642585446
37 1882 0.11184793131486 1 CA1 Pyramidal Cell Deep 0.53134962805526 386.68595076942 0.73 46.042008169823
38 66220 3.8347023356757 1 CA1 Pyramidal Cell Deep 4.485049833887 132.33397748342 0.68 90.267149259296
39 27850 1.6150752574327 1 CA1 Pyramidal Cell Deep 12.78276481149 208.6982510365 0.73 52.6280948265
40 9095 0.52741885806568 5 CTX Wide Interneuron Deep 0.10995052226498 146.32462512869 0.66 62.302485842026
41 21404 1.241367071785 5 CTX Wide Interneuron Deep 0 188.59518520449 0.7 156.61525767813
42 87501 5.067077113367 7 CTX Wide Interneuron Deep 2.3199734860173 118.1935681359 0.72 94.100629850026
43 10106 0.58587719824352 3 CA1 Pyramidal Cell Superficial 1.1874134177716 109.25840802834 0.61 76.43490734097
44 9288 0.53854241460298 7 CTX Wide Interneuron Deep 0 141.93612513399 0.71 92.026347732652
45 11615 0.67355526881824 7 CTX Wide Interneuron Deep 0.17219113215669 107.95007344282 0.73 70.614349618158
46 12888 0.74765769382391 7 CTX Wide Interneuron Deep 0.15518311607697 84.418075331374 0.73 85.679403130893
47 6607 0.38278655279241 4 CA1 Pyramidal Cell Superficial 0.30270924776752 240.08225090554 0.66 57.983594537798
48 7424 0.43080795170508 6 CTX Wide Interneuron Deep 0.13469827586207 78.073907231755 0.64 60.43848676173
49 7226 0.41903452074636 3 CA1 Pyramidal Cell Deep 1.3838915029062 158.46418096052 0.15 41.00031685329
50 10632 0.61615880106856 3 CA1 Wide Interneuron Deep 0 340.14127376704 0.71 134.6840448194
51 10366 0.60028599406042 6 CTX Wide Interneuron Deep 0.096469226316805 88.518597187104 0.71 83.564391481629
52 36473 2.1122412010463 8 CTX Narrow Interneuron Deep 0.027417541743207 118.1089550867 0.18 128.44188949381
53 25535 1.4788754500189 2 CA1 Pyramidal Cell Deep 1.9189347953789 102.21401900944 0.66 64.585785807008
54 16591 0.96105816471899 2 CA1 Pyramidal Cell Superficial 1.9287565547586 87.058839859766 0.69 58.465142054758
55 13941 0.80743889556584 2 CA1 Pyramidal Cell Deep 0.07173086579155 197.9484770883 0.68 56.571844501006
56 7930 0.50481846519507 8 CTX Wide Interneuron Deep 0.12610340479193 136.73988375722 0.73 55.068246694226
57 17920 1.0390125016454 5 CTX Unknown Deep 0.61383928571429 82.384424078111 0.62 118.91170695185
58 9072 0.5261008263999 2 CA1 Pyramidal Cell Deep 0.66137566137566 316.39261571608 0.68 61.194924936907
59 6033 0.34969690630717 4 CA1 Pyramidal Cell Superficial 0.16575501408918 163.01377654011 0.67 55.162978318714
60 94496 5.4722245572656 2 CA1 Wide Interneuron Superficial 0.095242126650864 67.186706162412 0.54 174.8628021264
61 10470 0.60714026350079 7 CTX Wide Interneuron Deep 0.2865329512894 72.265261041066 0.66 67.693557908167
62 2803 0.16283538286807 1 CA1 Pyramidal Cell Superficial 0.35676061362826 169.55802252773 0.65 61.032874347462
63 22233 1.3955117409908 8 CTX Wide Interneuron Deep 0.26986911347996 164.40673188072 0.68 134.73918516323
64 14840 0.86049270687493 7 CTX Pyramidal Cell Deep 0.94339622641509 105.12636779325 0.74 46.53436600125
65 1645 0.095421584218493 6 CTX Wide Interneuron Deep 0 221.92861116314 0.71 83.501270957736
66 9341 0.5421924818079 6 CTX Pyramidal Cell Deep 0 101.09352132882 0.68 85.727929703808
67 5196 0.3016505387449 1 CA1 Pyramidal Cell Deep 0.19245573518091 330.91520754958 0.72 59.853647585236
68 2943 0.17432977738301 1 CA1 Pyramidal Cell Deep 0 480.45318224524 0.75 96.227725617112
69 24082 1.3960974623627 8 CTX Wide Interneuron Deep 0.66439664479694 76.182257355122 0.69 102.90715266649
70 9946 0.57596778193973 6 CTX Narrow Interneuron Deep 0 274.04202747344 0.63 103.4936272635
71 6045 0.35081258233867 1 CA1 Pyramidal Cell Superficial 0.16542597187758 193.73509395015 0.62 71.705684130056
72 35793 2.0735502880161 5 CTX Wide Interneuron Deep 0.13969211857067 65.375283225392 0.68 83.794535015432
73 25499 1.4769401575259 4 CA1 Pyramidal Cell Superficial 2.745205694341 72.498950546673 0.6 55.664472686506
74 5702 0.3306617301766 7 CTX Wide Interneuron Deep 0 106.99825964746 0.72 50.201253068522
75 16543 0.95825842963021 3 CA1 Pyramidal Cell Deep 2.4179411231337 148.98839172726 0.71 51.446422012848
76 3306 0.19194762358986 3 CA1 Pyramidal Cell Deep 0.60496067755596 301.80673100115 0.71 57.039952751392
77 2431 0.14142833231687 2 CA1 Pyramidal Cell Superficial 0.41135335252982 135.55505896292 0.73 37.731293335273
78 16733 0.97233954610634 1 CA1 Pyramidal Cell Deep 3.0478694794717 219.35489398096 0.66 65.492074904719
79 32406 1.8765924194839 8 CTX Wide Interneuron Deep 0.27772634697278 99.206811927197 0.69 107.7870783206
80 7211 0.41884435162762 6 CTX Wide Interneuron Deep 0 117.76584099176 0.68 50.226910441784
81 59149 3.4285472755567 5 CTX Wide Interneuron Deep 0.21978393548496 94.721138954324 0.71 119.57762046295
82 8983 0.52030524373506 6 CTX Wide Interneuron Deep 0.55660692419014 84.124570013721 0.7 77.29157456717
83 8614 0.49937718870104 3 CA1 Pyramidal Cell Deep 0 291.40240329583 0.7 62.978004936883
84 7092 0.41141186196116 3 CA1 Pyramidal Cell Deep 1.4100394811055 129.36046643455 0.69 58.186020979384
85 8395 0.48640514142576 2 CA1 Pyramidal Cell Deep 2.5014889815366 84.530761242791 0.71 39.832876363089
86 19169 1.1102317054844 5 CTX Wide Interneuron Deep 0.46950805988836 120.86821156748 0.71 55.524211577442
87 1573 0.092999590340648 3 CA1 Pyramidal Cell Superficial 1.9071837253655 191.47325278691 0.71 41.826977903635
88 42526 2.4633699920413 5 CTX Wide Interneuron Deep 0.30569533932183 116.67329961913 0.7 78.928107260728
89 7065 0.40995475164322 4 CA1 Pyramidal Cell Superficial 2.4062278839349 219.24001313173 0.73 59.430252380327
90 2530 0.14717603139319 2 CA1 Pyramidal Cell Deep 0 357.26002338866 0.69 75.311471168513
91 32573 1.8891493687531 5 CTX Wide Interneuron Deep 0 137.84506027013 0.73 74.888464801896
92 5707 0.33133319726436 2 CA1 Pyramidal Cell Deep 0 357.25000005795 0.7 84.979142854166
93 1919 0.11282403220792 4 CA1 Pyramidal Cell Deep 0 231.95916085521 0.63 52.314635260475
94 20569 1.1915040599216 1 CA1 Pyramidal Cell Deep 0.48616850600418 128.50390536038 0.72 66.774424996579
95 84190 4.8753762563953 7 CTX Narrow Interneuron Deep 0.11877895236964 114.55181783652 0.35 143.81580964409
96 122919 7.1180133831322 7 CTX Wide Interneuron Deep 0.21152140840716 120.03254570702 0.71 133.91568827677
97 355037 20.559709404953 3 CA1 Narrow Interneuron Superficial 0.84498235395184 162.99846386217 0.3 0
98 1898 0.11106308162724 3 CA1 Pyramidal Cell Superficial 1.0537407797682 219.20416671009 0.7 30.115206127608
99 2212 0.12889883765444 4 CA1 Pyramidal Cell Superficial 0.90415913200723 395.88947916951 0.72 41.908721104704