Details for PeterP-2013-09-04

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  • Date & time: 2013-09-04,

  • Location: Denmark, Berglab

  • Animal subject: TurtleSubject1

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Fluctuation-driven regime in spinal motor networks

  • Data repositories: NYUshare_Peter_AmplipexData

  • Created: 2018-12-07 11:25:54 by Peter Petersen
    Updated: 2020-06-29 20:59:38 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
PeterP-2013-09-04_006 423.5
PeterP-2013-09-04_007 423.5
PeterP-2013-09-04_008 423.5
PeterP-2013-09-04_009 423.5
PeterP-2013-09-04_010 423.5
PeterP-2013-09-04_011 423.5
PeterP-2013-09-04_012 423.5
PeterP-2013-09-04_013 423.5
PeterP-2013-09-04_014 423.5
PeterP-2013-09-04_015 423.5
PeterP-2013-09-04_016 423.5

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
40000 16940000 193 25 0.3815

Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 19, 28, 30, 27, 22, 24, 23
2 26, 38, 17, 18, 21, 36, 34, 20
3 33, 47, 40, 39, 35, 45, 42, 37
4 41, 25, 43, 31, 48, 29, 46, 44
5 7, 55, 1, 53, 3, 50, 54, 52
6 49, 63, 57, 58, 51, 61, 59, 56
7 60, 8, 16, 15, 62, 11, 14, 64
8 13, 4, 12, 5, 9, 10
9 83, 94, 91, 86, 88, 87
10 90, 102, 81, 82, 85, 100, 98, 84
11 97, 111, 104, 103, 99, 109, 106
12 105, 89, 107, 95, 112, 93, 110, 108
13 71, 119, 65, 117, 67, 114, 118, 116
14 113, 127, 121, 122, 115, 125, 123, 120
15 124, 72, 80, 79, 126, 75, 78, 128
16 77, 66, 68, 70, 76, 69, 73, 74
17 160, 147, 156, 158, 155, 150, 152, 151
18 154, 166, 145, 146, 149, 164, 162, 148
19 161, 175, 168, 167, 163, 173, 170, 165
20 169, 153, 171, 159, 176, 157, 174, 172
21 135, 183, 129, 181, 131, 178, 182, 180
22 177, 191, 185, 186, 179, 189, 187, 184
23 188, 136, 144, 143, 190, 139, 142, 192
24 141, 130, 132, 134, 140, 133, 137, 138
25 193
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) Extracellular 193 SyncChannel

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
SPIV – Spinal vestibular nucleus (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Bad 193, 2, 6, 32, 96, 92

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2018-06-04_120658 Peter Petersen Yes 116 22222

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 119 0.33377376043192 20 SPIV Narrow Interneuron Unknown 0 101.41866453364 0.40833333333333 7.241595855874
2 1398 3.9166891089497 13 SPIV Wide Interneuron Unknown 0 58.197601629184 0.575 9.1267501258845
3 2941 7.8691137086262 21 SPIV Wide Interneuron Unknown 0 54.917651272139 0.55 26.604733259031
4 55 0.15747801535325 1 SPIV Unknown Unknown 0 9.0764156567682 0.46666666666667 11.441406102883
5 320 0.90828441961548 6 SPIV Narrow Interneuron Unknown 0 54.893573814386 0.425 16.330829656886
6 177 0.49537031659901 8 SPIV Wide Interneuron Unknown 0 54.103396809336 0.59166666666667 95.673766109335
7 153 0.43291445794229 20 SPIV Narrow Interneuron Unknown 0 115.71073479808 0.40833333333333 9.015410029316
8 266 0.74559860320791 3 SPIV Narrow Interneuron Unknown 0 181.0358321809 0.43333333333333 10.164065401888
9 328 0.91690608491585 1 SPIV Wide Interneuron Unknown 0 51.672282596972 0.59166666666667 8.5542346100024
10 136 0.36258670421216 8 SPIV Wide Interneuron Unknown 0 25.978911761622 0.51666666666667 88.176212767342
11 335 0.95461782480925 1 SPIV Wide Interneuron Unknown 0 21.796352965016 0.55833333333333 8.3592295944682
12 538 1.5052158316531 22 SPIV Wide Interneuron Unknown 1.8587360594796 14.840160579555 0.68333333333333 8.9469808656007
13 588 1.6535851582295 22 SPIV Wide Interneuron Unknown 0 15.139661346324 0.66666666666667 9.1891731422326
14 984 2.7222804964233 1 SPIV Narrow Interneuron Unknown 0 1.7414486728708 0.40833333333333 10.299501782271
15 1927 5.3947764873692 19 SPIV Wide Interneuron Unknown 0 18.250189147606 0.71666666666667 8.780668881986
16 6727 18.545768583159 13 SPIV Wide Interneuron Unknown 5.6488776572023 25.464885247447 0.56666666666667 210.26065566715
17 3662 10.159174737667 22 SPIV Wide Interneuron Unknown 0 22.068250141086 0.45833333333333 0
18 5451 14.159148596446 12 SPIV Wide Interneuron Unknown 3.1186938176481 15.484582390714 0.44166666666667 46.391662450766
19 1426 3.9099641639172 4 SPIV Wide Interneuron Unknown 0 47.744997566583 0.50833333333333 8.9656299846903
20 1356 3.7195842212549 6 SPIV Narrow Interneuron Unknown 0.73746312684366 18.160484778571 0.4 0
21 1246 3.459763965517 2 SPIV Wide Interneuron Unknown 0 5.9355430781423 0.49166666666667 14.299834444082
22 1607 4.4575721377054 17 SPIV Wide Interneuron Unknown 2.4891101431238 11.586027521182 0.46666666666667 10.236926490919
23 1616 4.3705820879699 2 SPIV Wide Interneuron Unknown 2.4752475247525 7.0374319395653 0.46666666666667 15.096164441836
24 1691 4.525064872197 19 SPIV Narrow Interneuron Unknown 10.644589000591 8.1192804189378 0.44166666666667 9.7538915807152
25 1556 4.3585913374538 21 SPIV Wide Interneuron Unknown 1.9280205655527 7.4045456505937 0.33333333333333 14.007583219276
26 1499 4.1570643748735 2 SPIV Wide Interneuron Unknown 2.6684456304203 14.412034336325 0.6 17.939143121258
27 1527 4.2700527317956 3 SPIV Wide Interneuron Unknown 3.9292730844794 35.897663629878 0.61666666666667 15.631200383758
28 1471 4.0913690886357 4 SPIV Wide Interneuron Unknown 0.67980965329708 45.445545445673 0.48333333333333 9.7928825898654
29 1086 3.0196036506063 1 SPIV Wide Interneuron Unknown 0 17.243028333226 0.46666666666667 10.591111495324
30 1310 3.6126554906917 18 SPIV Wide Interneuron Unknown 2.2900763358779 18.285270827265 0.8 20.371808212913
31 1893 4.987565009768 20 SPIV Wide Interneuron Unknown 0 15.313642766019 0.63333333333333 12.256989846595
32 1063 2.930259950996 17 SPIV Wide Interneuron Unknown 0 25.087950799906 0.70833333333333 9.275754394084
33 1209 3.2876996184678 18 SPIV Narrow Interneuron Unknown 1.6542597187758 7.6838917605714 0.31666666666667 20.939277589282
34 1306 3.3924135398861 4 SPIV Narrow Interneuron Unknown 3.8284839203675 8.5794077025886 0.43333333333333 10.734943655928
35 1338 3.6962454240661 4 SPIV Wide Interneuron Unknown 5.2316890881913 3.1147065393517 0.64166666666667 7.9889299280133
36 1713 4.7199112888127 12 SPIV Wide Interneuron Unknown 2.3350846468184 3.925635429249 0.78333333333333 11.233252435038
37 1540 4.2854093776445 4 SPIV Wide Interneuron Unknown 1.9480519480519 40.58350551758 0.55 10.07976768512
38 1892 5.2134787991281 1 SPIV Wide Interneuron Unknown 0 62.82289065703 0.49166666666667 14.126710984969
39 1828 5.0527767088001 15 SPIV Wide Interneuron Unknown 1.6411378555799 14.58045847321 0.46666666666667 0
40 1821 5.0614067319767 7 SPIV Wide Interneuron Unknown 0.54914881933004 17.241523567302 0.48333333333333 28.519661721121
41 1792 4.9517070402111 19 SPIV Wide Interneuron Unknown 3.3482142857143 23.091915826934 0.56666666666667 10.656619169807
42 1877 5.1840346095762 18 SPIV Narrow Interneuron Unknown 0 18.381153735429 0.31666666666667 28.291188530939
43 2045 5.6394094063005 19 SPIV Wide Interneuron Unknown 0.97799511002445 13.028214643095 0.5 10.251064891646
44 308 0.86527165491562 23 SPIV Wide Interneuron Unknown 6.4935064935065 45.002340837463 0.69166666666667 8.9680405083659
45 1183 3.2550948046362 11 SPIV Narrow Interneuron Unknown 2.5359256128487 47.163282770865 0.41666666666667 14.610417510135
46 1215 3.3245454060392 13 SPIV Wide Interneuron Unknown 1.6460905349794 38.049535883931 0.45833333333333 10.385627578756
47 988 2.7594587746146 2 SPIV Wide Interneuron Unknown 3.0364372469636 31.267577258438 0.73333333333333 11.773087876344
48 465 1.2404588043631 2 SPIV Wide Interneuron Unknown 0 12.560506143669 0.50833333333333 10.017517932218
49 1313 3.6429953356897 5 SPIV Wide Interneuron Unknown 6.0929169840061 13.963156202511 0.59166666666667 68.60558125023
50 1503 4.2114229594003 5 SPIV Wide Interneuron Unknown 2.6613439787092 17.936232062796 0.59166666666667 0
51 1505 4.1091303100782 3 SPIV Wide Interneuron Unknown 1.328903654485 23.035764486451 0.59166666666667 22.302512675601
52 1458 4.0867100078427 17 SPIV Wide Interneuron Unknown 0.68587105624143 21.499783552309 0.41666666666667 10.243059349049
53 388 1.0902795745184 20 SPIV Wide Interneuron Unknown 0 36.226568169234 0.55833333333333 9.3345580612477
54 1067 2.9692498282141 11 SPIV Wide Interneuron Unknown 0 66.281665520453 0.75833333333333 10.490785107051
55 710 1.9963371431038 2 SPIV Wide Interneuron Unknown 0 12.527477862861 0.49166666666667 8.7099427708071
56 680 1.8906908222809 10 SPIV Wide Interneuron Unknown 1.4705882352941 40.542624075224 0.75 9.9321321900513
57 24 0.068209920862992 22 SPIV Wide Interneuron Unknown 0 25.782713012208 0.73333333333333 0
58 1254 3.7246326232077 12 SPIV Wide Interneuron Unknown 3.1897926634769 75.402278582627 0.48333333333333 18.315155024772
59 553 1.547250346575 4 SPIV Wide Interneuron Unknown 0 12.874370866084 0.55 6.3438210570849
60 208 0.58222732884109 21 SPIV Wide Interneuron Unknown 0 20.074908599776 0.54166666666667 10.419416828161
61 474 1.3090133022263 4 SPIV Wide Interneuron Unknown 0 3.3415976332349 0.53333333333333 6.3668410317449
62 1118 3.1397848798014 3 SPIV Wide Interneuron Unknown 2.6833631484794 50.428062844778 0.6 14.309227411936
63 320 0.88988382844708 10 SPIV Wide Interneuron Unknown 0 55.367850816015 0.675 8.7151019524295
64 389 1.0840587969525 10 SPIV Wide Interneuron Unknown 0 31.329329814322 0.51666666666667 10.460339294618
65 378 1.0336987855065 4 SPIV Wide Interneuron Unknown 0 9.6246028052161 0.525 6.0542937390797
66 882 2.4440485720016 13 SPIV Wide Interneuron Unknown 3.4013605442177 31.608587063152 0.60833333333333 8.2720934966504
67 758 1.9702661366876 10 SPIV Wide Interneuron Unknown 0 15.845455339707 0.56666666666667 20.666798145727
68 307 0.85992290104934 4 SPIV Wide Interneuron Unknown 0 31.258255157403 0.45833333333333 6.3248731459019
69 170 0.47480688626392 4 SPIV Wide Interneuron Unknown 0 41.473203576104 0.50833333333333 7.7724106125672
70 705 1.9242671237597 3 SPIV Wide Interneuron Unknown 5.6737588652482 22.162890971267 0.46666666666667 13.72080428454
71 372 1.0105414824902 7 SPIV Wide Interneuron Unknown 8.0645161290323 7.530730006322 0.60833333333333 11.987677803631
72 336 0.90583428044912 11 SPIV Wide Interneuron Unknown 0 17.272969424442 0.525 11.039058933714
73 1430 3.8153312951549 23 SPIV Narrow Interneuron Unknown 1.3986013986014 12.194206291908 0.38333333333333 14.987573284405
74 70 0.27784872843522 12 SPIV Pyramidal Cell Unknown 28.571428571429 4.0263971580902 0.31666666666667 12.481258186928
75 373 1.04424081593 4 SPIV Wide Interneuron Unknown 0 29.235464105735 0.475 9.3158620436342
76 256 0.71552925581813 20 SPIV Wide Interneuron Unknown 3.90625 18.986591367027 0.675 7.1676101316103
77 205 0.57001334943459 21 SPIV Wide Interneuron Unknown 0 21.263709346465 0.78333333333333 9.0823507521714
78 1147 3.2136629144981 22 SPIV Wide Interneuron Unknown 0.871839581517 42.296389999592 0.79166666666667 11.714874724076
79 637 1.7852077045024 19 SPIV Narrow Interneuron Unknown 0 50.996802700016 0.34166666666667 6.5266246228642
80 1249 3.4539059452188 23 SPIV Wide Interneuron Unknown 1.6012810248199 18.936017826336 0.7 12.689009888054
81 1397 3.8371620492313 19 SPIV Narrow Interneuron Unknown 0 23.756875716178 0.275 10.141278070781
82 151 0.42311727872262 11 SPIV Wide Interneuron Unknown 0 21.252125980386 0.60833333333333 7.9866331081358
83 419 1.1679463670108 19 SPIV Wide Interneuron Unknown 0 11.807271293491 0.53333333333333 7.0469697054278
84 2189 5.8794142610041 12 SPIV Narrow Interneuron Unknown 0.45682960255825 28.044432890728 0.45 12.379663933894
85 2083 5.8406293299133 3 SPIV Wide Interneuron Unknown 0 29.053110637342 0.49166666666667 28.129191994015
86 2096 5.7771675368939 20 SPIV Wide Interneuron Unknown 0.47709923664122 8.7900730794222 0.625 13.789608159734
87 2260 6.2783066379133 20 SPIV Wide Interneuron Unknown 9.2920353982301 42.262895264075 0.5 10.379885688137
88 2473 6.8630127529791 1 SPIV Wide Interneuron Unknown 2.8305701577032 9.3856429545807 0.46666666666667 16.077076027672
89 2219 6.1294892587192 4 SPIV Wide Interneuron Unknown 0.90130689499775 11.093269046549 0.475 8.949014244321
90 2506 6.7400075051839 4 SPIV Wide Interneuron Unknown 0.39904229848364 16.14530491842 0.475 9.226181098509
91 2682 6.966741343103 12 SPIV Narrow Interneuron Unknown 2.6099925428784 16.84352000016 0.45833333333333 14.026428348542
92 2198 6.1165938836983 19 SPIV Wide Interneuron Unknown 3.6396724294813 19.381443095048 0.8 10.310251157295
93 2430 6.7101014571482 4 SPIV Wide Interneuron Unknown 8.2304526748971 27.886805191066 0.49166666666667 10.223463750882
94 2568 7.1037098765219 19 SPIV Wide Interneuron Unknown 2.3364485981308 14.986483835559 0.5 12.11073990301
95 3087 8.2887386262268 13 SPIV Narrow Interneuron Unknown 0.64787819889861 40.557339232105 0.425 17.084715308972
96 2895 7.7197565703428 23 SPIV Wide Interneuron Unknown 2.7633851468048 14.400653713895 0.725 24.663392427017
97 2979 8.2071310160746 21 SPIV Wide Interneuron Unknown 0.67136623027862 15.021110322346 0.55833333333333 24.228190017083
98 3299 8.8271160227942 17 SPIV Narrow Interneuron Unknown 2.1218551076084 21.097772267286 0.44166666666667 27.135096368037
99 3244 9.0826368765137 17 SPIV Narrow Interneuron Unknown 0 23.695312857584 0.44166666666667 17.282980567428
100 3528 9.7246079509007 20 SPIV Wide Interneuron Unknown 19.557823129252 9.3385475709178 0.79166666666667 15.793308577265
101 3549 9.9141555368701 20 SPIV Narrow Interneuron Unknown 1.6906170752325 25.312245259542 0.425 13.865881615606
102 3628 9.4822558908809 11 SPIV Wide Interneuron Unknown 3.3076074972437 4.8626122480997 0.51666666666667 0
103 4145 10.822783512867 10 SPIV Wide Interneuron Unknown 0 20.937380582123 0.5 0
104 2887 7.9416783170519 7 SPIV Wide Interneuron Unknown 0.34638032559751 15.871277119472 0.43333333333333 0
105 1845 5.0960709500133 14 SPIV Wide Interneuron Unknown 1.0840108401084 10.246253308805 0.45 0
106 1654 4.571613362848 21 SPIV Wide Interneuron Unknown 24.788391777509 10.423448036343 0.8 14.476456624335
107 2615 7.2309878939713 23 SPIV Narrow Interneuron Unknown 0 22.974739003762 0.31666666666667 18.863128812909
108 283 0.78669774725069 4 SPIV Wide Interneuron Unknown 0 6.8900207641255 0.525 5.713562946946
109 181 0.54939084393111 1 SPIV Wide Interneuron Unknown 0 8.2507064679494 0.45833333333333 8.2755654915866
110 69 0.19200682542524 17 SPIV Wide Interneuron Unknown 0 34.587260374109 0.73333333333333 8.4904038201507
111 68 0.1891608338599 13 SPIV Wide Interneuron Unknown 0 65.742190547908 0.63333333333333 7.9122840546604
112 127 0.36165927567051 18 SPIV Wide Interneuron Unknown 0 39.005029832945 0.775 8.6640732251132
113 117 0.3299977936686 13 SPIV Wide Interneuron Unknown 0 101.87856845274 0.50833333333333 10.858385183986
114 49 0.13799608006645 8 SPIV Wide Interneuron Unknown 0 17.151600825355 0.625 18.058133187793
115 348 0.93721961681453 12 SPIV Wide Interneuron Unknown 0 7.3717686157478 0.46666666666667 9.139439970885
116 87 0.24808091943351 4 SPIV Wide Interneuron Unknown 0 59.743091113901 0.48333333333333 5.7960905146624