Details for Peter_MS22_180719_122813_concat

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  • Date & time: 2018-06-29, 11:03:19

  • Animal subject: MS22

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2018-12-07 15:26:22 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:49:00 by Peter Petersen

  • Notes:
    recordingID = 144

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS22_180719_122813 Homecage_Sleep Homecage Homecage_Rat 8235
Peter_MS22_180719_145553 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter 9843.624
Peter_MS22_180719_155902 Homecage_Sleep Homecage Homecage_Rat 12523.86
Peter_MS22_180719_164535 Homecage_Sleep Homecage Homecage_Rat 14440.932

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 288819000 128 14 0.195

Implanted probes

MS22 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS22 : #2 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 20, 19, 18
8 114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9 124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10 102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11 104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12 91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13 71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14 81, 84, 83, 82
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-07-19 02.56.00 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180719_145556802.avi 2 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 56 8
Ripple 56 8
Cortical 7, 14

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2018-12-07_174500 Peter Petersen Yes 59 22361

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 14396 1.0006520538218 8 CA1 Pyramidal Cell Unknown 0 500.88202656653 0.66 68.294650177368
2 13495 0.93462100306289 9 CA1 Pyramidal Cell Unknown 4.0755835494628 171.55558522365 0.75 54.349127652893
3 10212 0.70776131564678 9 CA1 Pyramidal Cell Unknown 10.771641206424 367.91719769419 0.75 45.734686155274
4 6020 0.41819884529116 9 CA1 Pyramidal Cell Unknown 0.16611295681063 580.70003125064 0.75 37.714069777994
5 25056 1.7351499185873 8 CA1 Pyramidal Cell Unknown 4.4300766283525 219.39835821141 0.71 39.238365957211
6 34473 2.3884299142252 11 CA1 Pyramidal Cell Unknown 3.8290836306675 193.22331443608 0.71 38.290061580179
7 15808 2.0428242805535 11 CA1 Pyramidal Cell Unknown 8.0971659919028 335.42069435358 0.72 28.595170024552
8 4295 0.2980336920115 11 CA1 Pyramidal Cell Unknown 1.3969732246799 626.25021168328 0.72 23.385267538235
9 18099 1.2542614283935 11 CA1 Pyramidal Cell Unknown 0.60776838499365 279.76642592601 0.72 25.534939583848
10 10334 0.98335300594428 12 CA1 Pyramidal Cell Unknown 4.9351654731953 250.58553468152 0.69 43.039427285954
11 32848 2.3793674105352 12 CA1 Pyramidal Cell Unknown 7.4281539210911 267.7307484663 0.73 103.06461264139
12 425049 29.566293692032 11 CA1 Narrow Interneuron Unknown 0.95518399055168 208.76088520062 0.28 0
13 3765 0.26105413179995 10 CA1 Pyramidal Cell Unknown 1.062416998672 310.9826337259 0.72 33.178099842887
14 44469 3.0807248208593 10 CA1 Pyramidal Cell Unknown 0.92199060019339 394.88202266614 0.73 60.036310741226
15 20454 1.4176408667811 8 CA1 Pyramidal Cell Unknown 0.34223134839151 262.13736218804 0.73 54.088904128896
16 239547 16.58872109206 8 CA1 Narrow Interneuron Unknown 0.20455276000117 246.91967306715 0.36 73.572800908976
17 248276 17.192629576567 8 CA1 Narrow Interneuron Unknown 0.26986096118835 150.28677670016 0.32 159.7768441953
18 2962 0.20599277132976 8 CA1 Pyramidal Cell Unknown 0.33760972316003 465.01535268787 0.73 35.036754499677
19 2283 0.16043875523012 6 CA1 Pyramidal Cell Unknown 0.8760402978537 288.92557616018 0.72 40.163508279442
20 27643 1.9142794352838 12 CA1 Narrow Interneuron Unknown 0.94056361465832 87.12219579342 0.41 344.09113934479
21 12542 0.87172934640111 6 CA1 Wide Interneuron Unknown 0 111.84352111394 0.71 0
22 4097 0.28776342539646 9 CA1 Pyramidal Cell Unknown 1.2204051745179 154.80006797358 0.64 32.582809265586
23 46248 8.1367116039882 11 CA1 Narrow Interneuron Unknown 0.58380902957966 351.72525995675 0.24 48.141589647666
24 24645 1.7074282453886 4 CA1 Pyramidal Cell Unknown 2.1099614526273 242.77932315808 0.72 0
25 29128 2.0172924583904 10 CA1 Pyramidal Cell Unknown 0.96127437517166 131.41434740181 0.71 39.18764070474
26 3465 0.24026666479446 10 CA1 Pyramidal Cell Unknown 0 567.76982003672 0.75 56.907904111346
27 60152 4.1659620751526 5 CA1 Wide Interneuron Unknown 0.19949461364543 84.755704650761 0.48 0
28 7725 0.53679237848492 9 CA1 Pyramidal Cell Unknown 2.0711974110032 106.22325035783 0.66 56.520434985423
29 6000 0.41624940843154 5 CA1 Pyramidal Cell Unknown 0 314.44818445254 0.69 62.100645874624
30 5189 0.35942227644965 8 CA1 Pyramidal Cell Unknown 0 287.61618519205 0.74 34.539654929017
31 5433 0.39216183618877 11 CA1 Pyramidal Cell Unknown 0 636.78501613232 0.73 46.004513001156
32 17005 1.178461239327 5 CA1 Pyramidal Cell Unknown 2.6462805057336 126.00318572273 0.75 77.142962587034
33 12302 0.85254531294451 10 CA1 Pyramidal Cell Unknown 0.48772557307755 269.18391966866 0.71 34.013812215541
34 5589 0.38716795308397 9 CA1 Pyramidal Cell Unknown 0.35784576847379 112.26086748989 0.65 40.866036947043
35 13560 0.93946418747795 11 CA1 Pyramidal Cell Unknown 6.9321533923304 167.2163954849 0.68 23.899993006583
36 12679 0.8786107378463 11 CA1 Pyramidal Cell Unknown 2.6027289218393 180.71595615973 0.7 31.562425780914
37 90717 6.2826644688803 10 CA1 Narrow Interneuron Unknown 0.06613975329872 131.29743718196 0.34 243.11941123052
38 7408 0.51693558034 6 CA1 Pyramidal Cell Unknown 0.67494600431965 102.8390534746 0.49 64.960375620114
39 1296 0.08993021602591 9 CA1 Pyramidal Cell Unknown 0.7716049382716 287.66366356167 0.66 23.565060295983
40 7180 0.49745006783456 8 CA1 Pyramidal Cell Unknown 1.5320334261838 151.81848924232 0.67 27.374053511824
41 2887 0.27205927284795 8 CA1 Pyramidal Cell Unknown 0 324.71515964479 0.72 45.899891579246
42 20146 1.3991748611768 8 CA1 Narrow Interneuron Unknown 0.24818822595056 167.46487887524 0.35 54.406446153471
43 4817 0.33576645983804 10 CA1 Pyramidal Cell Unknown 0 249.70271571121 0.69 60.438950218462
44 7321 0.50793085181603 8 CA1 Pyramidal Cell Unknown 0.81956016937577 610.32339249843 0.71 48.281657860526
45 43663 3.0261394604025 10 CA1 Pyramidal Cell Unknown 2.4505874539083 197.14105651631 0.68 49.177330097158
46 10207 0.7074098909362 8 CA1 Pyramidal Cell Unknown 4.0168511805624 152.39473877931 0.7 33.751985048365
47 11476 0.79555114986101 8 CA1 Pyramidal Cell Unknown 2.701289647961 173.63668035629 0.68 35.144841825778
48 2563 0.17782172974044 6 CA1 Narrow Interneuron Unknown 0 253.67095145725 0.33 45.868850340927
49 119435 8.2708835516173 3 CA1 Wide Interneuron Unknown 0.91263030100054 64.112352856228 0.46 191.43806680643
50 3023 0.23022111862644 8 CA1 Pyramidal Cell Unknown 2.9771749917301 261.08824832792 0.71 39.68146226153
51 68225 4.7245237862668 13 CA1 Wide Interneuron Unknown 0.073286918285086 76.247763631214 0.58 118.59004470011
52 128320 8.8862471139909 13 CA1 Narrow Interneuron Unknown 0.83385286783042 105.70754001568 0.31 0
53 16787 1.1638831708813 10 CA1 Pyramidal Cell Unknown 1.191398105677 300.60795457648 0.74 55.102876502416
54 109978 7.6504258336247 9 CA1 Narrow Interneuron Unknown 2.8369310225681 176.40160214937 0.26 0
55 69126 4.7870843375937 1 CA1 Narrow Interneuron Unknown 0.043399010502561 96.353555101992 0.37 0
56 859 0.083010676037834 9 CA1 Pyramidal Cell Unknown 0 549.93049253936 0.74 49.796306273023
57 15225 1.0552613182417 13 CA1 Pyramidal Cell Unknown 2.824302134647 189.22744148004 0.61 69.210166834935
58 2126 0.48841519813013 11 CA1 Wide Interneuron Unknown 0 505.17644961678 0.67 44.670339198702
59 231918 16.059944439606 3 CA1 Narrow Interneuron Unknown 2.5741857035676 116.84708089729 0.31 0