Details for Peter_MS13_171129_105507_concat

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  • Date & time: 2017-11-29, 10:55:07

  • Location: Alexandria

  • Animal subject: MS13

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-06 9:51:37 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:43:08 by Peter Petersen

  • Notes:
    recordingID = 92

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS13_171129_105507 Homecage_Sleep Homecage Homecage_Rat 13320.72
Peter_MS13_171129_144650 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 15634.8
Peter_MS13_171129_154015 Homecage_Sleep Homecage Homecage_Rat 19691.352

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 393827000 128 8 0.195

Implanted probes

MS13 : #1 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS13 : #2 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 43, 41, 58, 52, 56, 50, 44, 39, 55, 54, 40, 51, 53, 42, 49, 38
2 46, 37, 34, 60, 48, 45, 18, 35, 64, 62, 33, 47, 61, 36, 57, 59
3 20, 27, 32, 6, 63, 19, 1, 29, 2, 4, 31, 17, 3, 30, 7, 5
4 21, 23, 8, 14, 10, 16, 22, 25, 9, 12, 13, 11, 24, 15, 28
5 107, 105, 122, 116, 120, 114, 108, 103, 119, 118, 104, 115, 117, 106, 113, 102
6 110, 101, 98, 124, 112, 109, 99, 128, 126, 97, 111, 125, 100, 121, 123
7 91, 70, 127, 83, 65, 93, 66, 68, 95, 81, 67, 94, 71, 69
8 85, 87, 72, 74, 80, 89, 73, 76, 77, 75, 79
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2017-11-29 02.47.57 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171129_144653703.avi 2 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171129_105509854.avi 1 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171129_154018383.avi 3 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 21
Ripple 21
Bad 26, 78, 82, 83, 86, 88, 90, 92, 96
GammaPhaseCoupling 79

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2017-11-30_195448 Peter Petersen 123 Yes 104 52342

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 30413 1.7296086473949 8 CA1 Pyramidal Cell Superficial 5.6883569526189 198.31019583999 0.73 34.201532121083
2 4886 0.27759999453209 8 CA1 Pyramidal Cell Superficial 2.6606631191158 448.14359011847 0.75 24.720512652346
3 21956 1.247836075578 3 CA1 Pyramidal Cell Deep 1.184186554928 125.00683386404 0.73 43.128081169243
4 3766 0.21432750396195 7 CA1 Pyramidal Cell Deep 11.949017525226 327.12854273715 0.7 32.25690022531
5 4665 0.26505823458676 7 CA1 Pyramidal Cell Deep 1.2861736334405 319.63532756822 0.66 41.762415313521
6 8925 0.51370967811795 7 CA1 Pyramidal Cell Deep 2.3529411764706 178.00816182398 0.72 38.888379397433
7 56181 3.1904463042026 7 CA1 Pyramidal Cell Deep 2.0113561524359 239.28862187618 0.68 50.278538260258
8 113876 6.4657875727541 3 CA1 Wide Interneuron Superficial 2.0460852154976 101.07862934695 0.56 85.72847696756
9 3963 0.2261756988645 4 CA1 Pyramidal Cell Deep 2.7756749936916 185.51863974457 0.7 38.435644286709
10 8984 0.51039280387505 7 CA1 Pyramidal Cell Deep 4.8975957257346 172.79305316237 0.67 29.089203024463
11 9656 0.54977961629158 7 CA1 Pyramidal Cell Deep 6.4208782104391 219.50882246758 0.68 26.227062906515
12 14712 0.83537251358181 7 CA1 Pyramidal Cell Deep 6.5252854812398 126.80989639344 0.72 32.229267628117
13 21751 1.2355413129533 8 CA1 Pyramidal Cell Superficial 2.6665440669395 72.484978050935 0.62 41.281088108862
14 19572 1.1120144571425 8 CA1 Pyramidal Cell Deep 2.6057633353771 134.89505366619 0.67 35.936675761567
15 15442 0.87755186193978 8 CA1 Pyramidal Cell Superficial 1.748478176402 115.93041577983 0.61 75.244421317376
16 23387 1.328209244768 7 CA1 Wide Interneuron Deep 0.085517595245222 202.1665428285 0.67 62.90287148128
17 21160 1.2019824485114 7 CA1 Pyramidal Cell Deep 33.364839319471 529.95868621533 0.68 43.686170689986
18 6851 0.4079796617583 8 CA1 Pyramidal Cell Deep 5.6925996204934 270.03426364824 0.73 29.303958766585
19 12202 0.69313172580472 3 CA1 Pyramidal Cell Deep 4.5074577938043 316.98356757807 0.69 46.132638833111
20 126259 7.1688404410381 3 CA1 Pyramidal Cell Deep 2.241424373708 155.98477776577 0.66 74.868477767204
21 4399 0.25091483454561 8 CA1 Pyramidal Cell Superficial 2.2732439190725 587.14945271853 0.74 27.541880881646
22 9174 0.52115874243918 3 CA1 Pyramidal Cell Deep 3.8151297144103 558.03547974065 0.72 34.558443535538
23 29911 1.6992616932061 2 CA1 Pyramidal Cell Deep 5.1820400521547 90.968252756908 0.71 52.950092700964
24 31253 1.7758668721141 2 CA1 Pyramidal Cell Deep 2.2397849806419 124.72763569602 0.68 60.707881263531
25 2997 0.17108665891209 8 CA1 Pyramidal Cell Superficial 3.003003003003 273.25207436845 0.73 20.851942208154
26 8248 0.46846457820788 2 CA1 Pyramidal Cell Deep 3.7584869059166 165.41172352657 0.72 38.628723776669
27 2853 0.16448186836459 2 CA1 Pyramidal Cell Superficial 4.5566070802664 249.8597464236 0.72 37.544347806196
28 3601 0.20736736155723 3 CA1 Pyramidal Cell Deep 1.6662038322688 250.72359903462 0.63 50.802946992271
29 14816 0.84259775230111 2 CA1 Pyramidal Cell Deep 4.8596112311015 229.25476552512 0.73 44.055147127716
30 2453 0.14158616808072 2 CA1 Pyramidal Cell Deep 4.0766408479413 295.63653775159 0.71 33.264913808611
31 31384 1.7820737328351 3 CA1 Pyramidal Cell Deep 6.3408106041295 89.906233191596 0.65 51.744389828216
32 27872 1.583324007995 2 CA1 Pyramidal Cell Deep 3.7672215843858 92.528896785051 0.71 66.64627684853
33 10939 0.62118616841857 8 CA1 Pyramidal Cell Deep 4.2051375811317 111.9025110811 0.7 30.904042729874
34 40562 2.3031872037935 3 CA1 Wide Interneuron Deep 0.22188255017011 142.80269717351 0.16 61.384883271002
35 10709 0.60867555804924 7 CA1 Pyramidal Cell Deep 0.93379400504249 96.780039516901 0.62 43.03436672009
36 33551 1.905209715075 4 CA1 Pyramidal Cell Deep 2.5632618997943 61.296146035481 0.65 62.462214650521
37 41341 2.3474556155657 3 CA1 Pyramidal Cell Deep 5.22483732856 65.32033003983 0.72 68.584218216675
38 290 0.018226604376974 8 CA1 Wide Interneuron Deep 3.448275862069 246.79661956909 0.73 18.52872016761
39 1066 0.061802346766712 7 CA1 Pyramidal Cell Deep 5.6285178236398 217.91479387301 0.73 29.016354622419
40 11205 0.6372506224831 7 CA1 Pyramidal Cell Deep 2.6773761713521 111.17971603244 0.68 49.265976270964
41 1145 0.065302936601482 7 CA1 Pyramidal Cell Deep 2.6200873362445 257.20600004674 0.71 26.642943674782
42 14862 0.84463800343671 2 CA1 Pyramidal Cell Deep 2.354999327143 84.630927231555 0.69 51.96544705473
43 95429 5.4190352373378 8 CA1 Narrow Interneuron Superficial 0.42963878904735 172.74315428773 0.24 48.245703227516
44 151 0.0087245032747394 7 CA1 Wide Interneuron Deep 0 664.74403055683 0.74 37.651133040565
45 2411 0.13705815171307 3 CA1 Pyramidal Cell Deep 0 216.92860299477 0.7 29.278517732756
46 294 0.016740136458931 3 CA1 Pyramidal Cell Deep 0 405.12135703279 0.71 53.490855930952
47 1572 0.090539110989558 7 CA1 Pyramidal Cell Superficial 2.5445292620865 210.17134880598 0.73 36.811330454791
48 1567 0.090164101974103 7 CA1 Pyramidal Cell Deep 0.63816209317167 207.52885171142 0.73 28.212535868597
49 560 0.031994334991634 7 CA1 Pyramidal Cell Deep 1.7857142857143 327.15508111832 0.75 29.799349178437
50 14455 0.82236919302029 7 CA1 Pyramidal Cell Superficial 2.8363887928053 92.948966012115 0.71 60.641518021715
51 11049 0.62878284636689 8 CA1 Wide Interneuron Deep 0.090505928138293 116.49671641856 0.57 64.993232783565
52 433 0.024721459024885 7 CA1 Wide Interneuron Deep 0 533.47121427894 0.72 60.44258678912
53 12887 0.73229869421005 8 CA1 Pyramidal Cell Superficial 2.3279273686661 79.736715066284 0.68 33.329691635352
54 2540 0.14444586950468 7 CA1 Pyramidal Cell Deep 5.1181102362205 188.19622366248 0.74 37.74108973443
55 51 0.033611097198021 7 CA1 Wide Interneuron Deep 0 737.83416932642 0.65 150.34590314576
56 129 0.0074154646940902 7 CA1 Pyramidal Cell Deep 0 726.59057306537 0.73 44.340969146641
57 2402 0.20643780328932 2 CA1 Pyramidal Cell Deep 0.41631973355537 115.52310142623 0.64 57.742273282692
58 21288 1.2090790660353 3 CA1 Pyramidal Cell Deep 4.5095828635851 84.962884088503 0.71 44.676575141007
59 1560 0.089037183234739 8 CA1 Pyramidal Cell Superficial 0 174.74504984477 0.64 21.699163625301
60 71653 4.0686258673373 2 CA1 Narrow Interneuron Deep 2.6795807572607 66.289803460254 0.37 96.546926096292
61 8591 0.48831800075346 8 CA1 Pyramidal Cell Superficial 3.375625654755 118.19062638953 0.69 25.828238860197
62 68304 3.879015712484 4 CA1 Narrow Interneuron Deep 2.1814242211291 79.050292474279 0.44 83.837518677163
63 552 0.031536547220385 7 CA1 Unknown Deep 27.173913043478 207.92531579085 0.62 24.657477155602
64 14882 0.84515669135205 7 CA1 Pyramidal Cell Deep 3.2925682031985 130.7273015526 0.69 46.876079183486
65 9688 0.55030020969602 7 CA1 Pyramidal Cell Deep 2.1676300578035 111.83216285395 0.7 41.764063229081
66 40 0.0078252284524094 7 CA1 Wide Interneuron Deep 0 777.83308559967 0.59 0
67 709 0.040625877338455 7 CA1 Pyramidal Cell Deep 11.283497884344 468.42005200739 0.75 28.009767237947
68 10972 0.62320393111269 7 CA1 Pyramidal Cell Deep 1.6405395552315 191.50328877088 0.71 40.198711158678
69 17738 1.0072925899419 3 CA1 Pyramidal Cell Deep 4.7355958958169 137.1406904891 0.65 39.229910597059
70 10059 0.57125706369099 7 CA1 Pyramidal Cell Deep 4.4736057262153 152.4699705379 0.71 35.487673034347
71 659 0.037747767805942 7 CA1 Pyramidal Cell Deep 9.1047040971168 816.66317514058 0.74 48.02295663636
72 184 0.070311889786418 7 CA1 Wide Interneuron Deep 0 210.79535991436 0.65 61.924898998379
73 1372 0.082740693317619 7 CA1 Pyramidal Cell Deep 1.4577259475219 327.08593135546 0.74 37.971724155318
74 1196 0.068195789221344 7 CA1 Pyramidal Cell Deep 2.5083612040134 370.55496668571 0.71 30.001244323139
75 1026 0.065760657012801 8 CA1 Pyramidal Cell Deep 1.9493177387914 237.42516380357 0.67 28.526060635859
76 2908 0.16517284827377 8 CA1 Pyramidal Cell Superficial 1.3755158184319 495.60633144215 0.72 35.108372911235
77 2006 0.11463096819836 8 CA1 Pyramidal Cell Superficial 0.99700897308076 229.72351784465 0.68 22.758313474752
78 8313 0.4739908605291 7 CA1 Pyramidal Cell Deep 3.6088054853843 149.79645862002 0.7 33.290617407917
79 7285 0.41411270283838 3 CA1 Pyramidal Cell Deep 2.8826355525051 245.27623977313 0.74 34.308236111464
80 9298 0.52841585529903 2 CA1 Pyramidal Cell Superficial 3.118950311895 104.7866984267 0.68 39.300788102557
81 10739 0.61013664742849 4 CA1 Pyramidal Cell Deep 2.5142005773349 70.178145820657 0.7 47.609899725392
82 5677 0.32313009135514 8 CA1 Pyramidal Cell Superficial 2.4660912453761 334.17272622489 0.74 32.744516463331
83 35922 2.0414995450102 4 CA1 Pyramidal Cell Deep 7.7111519403151 68.346235881006 0.68 51.431506698191
84 3581 0.20427368209156 2 CA1 Pyramidal Cell Superficial 1.9547612398771 137.30735387367 0.7 35.799813949693
85 106003 6.0444259462368 8 CA1 Narrow Interneuron Superficial 0.43394998254766 181.47673111537 0.25 58.921445976459
86 2513 0.14333349920588 3 CA1 Pyramidal Cell Superficial 0.7958615200955 226.87406934472 0.66 43.091055224863
87 19458 1.1052576891858 7 CA1 Narrow Interneuron Deep 6.8866276081817 166.4966069537 0.3 45.54836412827
88 5251 0.29957810548335 8 CA1 Pyramidal Cell Superficial 1.1426394972386 184.91711321603 0.69 28.075670742928
89 1336 0.076371849860912 8 CA1 Wide Interneuron Superficial 0.74850299401198 223.15860462291 0.67 32.229495629268
90 1969 0.11391006644055 7 CA1 Pyramidal Cell Deep 0.5078720162519 291.41286048975 0.76 44.777615843458
91 6819 0.38782186121973 7 CA1 Pyramidal Cell Deep 7.0391553013638 207.9608941849 0.74 37.34668773923
92 189 0.016425584210122 7 CA1 Pyramidal Cell Deep 0 803.74287426505 0.67 32.203243514455
93 851 0.05503678161147 3 CA1 Pyramidal Cell Deep 0 552.94725360399 0.71 96.896327379701
94 15168 0.86158445011157 8 CA1 Pyramidal Cell Deep 0.92299578059072 174.20131126394 0.7 38.839834200057
95 9942 0.56483473260694 3 CA1 Pyramidal Cell Deep 3.922751961376 199.24194369956 0.69 39.30619112366
96 24684 1.4025831309428 3 CA1 Pyramidal Cell Superficial 2.6332847188462 164.15515628052 0.66 38.779777779783
97 75 0.0043707629514353 3 CA1 Wide Interneuron Superficial 0 211.88246156729 0.72 62.239547512896
98 28812 1.636410378554 8 CA1 Pyramidal Cell Superficial 10.585866999861 87.42483726578 0.7 29.934634025748
99 42979 2.4419528881158 2 CA1 Pyramidal Cell Superficial 20.172642453291 80.072811691643 0.73 55.952547035585
100 3108 0.27704798755056 8 CA1 Pyramidal Cell Superficial 2.8957528957529 416.1680017508 0.72 26.340949802041
101 6129 0.34950087964137 4 CA1 Wide Interneuron Deep 0.16315875346712 194.55128583708 0.73 50.610106888594
102 376 0.025050570589538 6 CA1 Pyramidal Cell Deep 0 143.05409474771 0.6 0
103 6184 0.35121738325903 8 CA1 Pyramidal Cell Superficial 1.9404915912031 289.9100993023 0.65 24.160037369952
104 16282 0.92565803899782 4 CA1 Pyramidal Cell Superficial 5.4661589485321 128.28938892151 0.7 44.053864554213