Details for YMV02_170815

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  • Date & time: 2017-08-15,

  • Location: Alexandria

  • Animal subject: YMV02

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:34:15 by Yuta Senzai
    Updated: 2020-06-27 18:41:44 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV02_170815 Homecage_Sleep Homecage Homecage_Mouse 7117.92

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 142358400 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Yuta Senzai Yes 13 22758

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 34514 4.8518759415499 1 VISp Narrow Interneuron Unknown 0.43460624674045 126.67202463149 0.26
2 14510 2.0395518583083 1 VISp Pyramidal Cell Unknown 1.7918676774638 125.32021207715 0.59
3 13868 2.0105735902736 1 VISp Narrow Interneuron Unknown 0.50475915777329 101.29597984797 0.23
4 6793 0.9547742832355 1 VISp Pyramidal Cell Unknown 1.1776829088768 142.54867810947 0.59
5 10099 1.4193611015636 1 VISp Pyramidal Cell Unknown 0.89117734429151 144.62297662056 0.58
6 43241 6.0750505970889 1 VISp Wide Interneuron Unknown 1.2256885825952 225.83709288201 0.58
7 89771 12.612752883967 1 VISp Wide Interneuron Unknown 0.01113945483508 463.64672784056 0.58
8 63479 8.9198498049557 1 VISp Wide Interneuron Unknown 0.28355834212889 229.40072158391 0.52
9 39982 5.6189224373402 1 VISp Pyramidal Cell Unknown 1.3005852633685 134.75660021734 0.58
10 40419 5.680198101318 1 VISp Pyramidal Cell Unknown 0.54429847349019 104.69973358885 0.44
11 62888 8.8353399153909 1 VISp Wide Interneuron Unknown 0.23851927235721 273.88830826994 0.58
12 11117 1.5620659732529 1 VISp Pyramidal Cell Unknown 0.089952325267608 209.36985061237 0.67
13 18636 2.622206948059 1 VISp Wide Interneuron Unknown 0.21463833440652 184.45488567936 0.7