Details for YMV12_171211

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  • Date & time: 2017-12-11,

  • Location: Alexandria

  • Animal subject: YMV12

  • Investigator: Yuta Senzai

  • Experimenters: Yuta Senzai

  • Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-08 13:41:26 by Yuta Senzai
    Updated: 2020-06-27 18:42:47 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
YMV12_171211 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 21717.504

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit

Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 434350080 64 1 0.195

Implanted probes

YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label

1 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description

Intan Technologies, RHD2000 USB interface board (256ch) adc 7 Stim opto and light stim

Equipment

File names

Epoch

Type

Framerate

Notes


Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups

VISp – Primary visual area (View in Atlas) 1:64 1

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups


Analysis tags

Tag

Value

Description


Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID

KiloSort Phy Yuta Senzai Yes 60 22858

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 132709 6.1149281600077 1 VISp Narrow Interneuron Unknown 6.796826138393 107.76588144027 0.28
2 63346 2.9255666382007 1 VISp Narrow Interneuron Unknown 4.7043222934361 61.843358081658 0.32
3 19687 0.9077044296292 1 VISp Pyramidal Cell Unknown 2.5905419820186 121.09154115623 0.61
4 68923 3.1759732579577 1 VISp Pyramidal Cell Unknown 0.2756699505245 210.31167615584 0.57
5 38297 1.7655743480271 1 VISp Pyramidal Cell Unknown 0.47001070579941 194.8769672699 0.58
6 227728 10.493194156008 1 VISp Wide Interneuron Unknown 2.4239443546687 178.45526937903 0.53
7 12917 0.59903694735558 1 VISp Pyramidal Cell Unknown 0.9290082836572 286.41736311545 0.64
8 76955 3.5463668046979 1 VISp Pyramidal Cell Unknown 0.038983821713989 119.40611067596 0.59
9 109242 5.0344216053658 1 VISp Pyramidal Cell Unknown 0.21969572142583 104.58495932964 0.7
10 67737 3.1232463885282 1 VISp Wide Interneuron Unknown 0.19191874455615 250.1493022183 0.68
11 196671 9.0841773179532 1 VISp Pyramidal Cell Unknown 0.24914705269206 108.09809331042 0.6
12 14352 0.6615651780264 1 VISp Pyramidal Cell Unknown 0.90579710144928 130.42816068737 0.67
13 4229 0.19638104378131 1 VISp Wide Interneuron Unknown 0.23646252069047 194.18688326964 0.69
14 24361 1.1232369848349 1 VISp Pyramidal Cell Unknown 4.4333155453389 143.82696479457 0.59
15 61546 2.8373735575469 1 VISp Wide Interneuron Unknown 0.27621616351997 122.25658398556 0.67
16 304459 14.029259576276 1 VISp Narrow Interneuron Unknown 0.50909974742083 156.98662526636 0.27
17 69160 3.1884146326508 1 VISp Pyramidal Cell Unknown 0.3903990746096 95.244508929543 0.6
18 12563 0.58129268276748 1 VISp Pyramidal Cell Unknown 25.073628910292 281.0726560655 0.56
19 57559 2.6530553222601 1 VISp Pyramidal Cell Unknown 94.511718410674 106.95556274782 0.58
20 17984 0.83010045233251 1 VISp Pyramidal Cell Unknown 0.11120996441281 176.0741423367 0.73
21 11806 0.54438327039015 1 VISp Pyramidal Cell Unknown 0.16940538709131 198.43844764974 0.58
22 28721 1.326831086436 1 VISp Pyramidal Cell Unknown 0.20890637512621 117.31782649508 0.62
23 35467 1.6348763831532 1 VISp Pyramidal Cell Unknown 0.62029492204021 203.85586918225 0.6
24 20241 0.93483961654653 1 VISp Pyramidal Cell Unknown 0.54345141050343 259.42210444253 0.67
25 127063 5.8552003286152 1 VISp Wide Interneuron Unknown 0.3069343553985 41.45632891463 0.58
26 16444 0.86250152438516 1 VISp Pyramidal Cell Unknown 1.5203113597665 113.51554317802 0.57
27 112944 5.2056362156698 1 VISp Narrow Interneuron Unknown 2.4171270718232 60.561345702499 0.4
28 314907 14.510272798262 1 VISp Pyramidal Cell Unknown 0.83516720809636 30.447432723812 0.51
29 68065 3.1442301516233 1 VISp Pyramidal Cell Unknown 0.058767354734445 224.61344729122 0.58
30 183044 8.4351026341749 1 VISp Wide Interneuron Unknown 0.96698061668233 133.96208719508 0.57
31 60887 2.8065564176184 1 VISp Pyramidal Cell Unknown 0.36132507760277 109.39959416442 0.56
32 5198 0.57502505557184 1 VISp Pyramidal Cell Unknown 0.38476337052713 122.24521399156 0.57
33 49124 2.2643517976309 1 VISp Pyramidal Cell Unknown 1.0992590179953 73.756478717274 0.73
34 85108 3.9221983376959 1 VISp Pyramidal Cell Unknown 6.0746345819429 64.714994494611 0.59
35 87254 4.0206380279865 1 VISp Narrow Interneuron Unknown 4.9281408302198 96.297915439942 0.34
36 75927 3.4987504179727 1 VISp Wide Interneuron Unknown 3.608729437486 86.029349534702 0.72
37 30038 2.0622596306059 1 VISp Pyramidal Cell Unknown 1.3649377455223 97.570302029788 0.62
38 63351 2.9199532301397 1 VISp Pyramidal Cell Unknown 3.7094915628798 61.322092730634 0.59
39 112235 5.1717003478711 1 VISp Narrow Interneuron Unknown 2.9758987838018 57.791666683251 0.27
40 92581 4.2661618967221 1 VISp Wide Interneuron Unknown 3.0891867661831 106.08940783734 0.52
41 26261 1.2107811743809 1 VISp Pyramidal Cell Unknown 2.7797875176117 148.14173442385 0.61
42 78455 3.6151274534829 1 VISp Narrow Interneuron Unknown 2.9316168504238 79.880964199651 0.35
43 76461 3.5241856231953 1 VISp Wide Interneuron Unknown 5.7022534363924 83.42185278163 0.68
44 40240 1.8580119760831 1 VISp Pyramidal Cell Unknown 1.1679920477137 125.58781445852 0.67
45 40219 1.8540342130001 1 VISp Narrow Interneuron Unknown 4.0279469902285 79.694535992084 0.33
46 38316 1.765695339071 1 VISp Wide Interneuron Unknown 2.5837770122142 52.628252612288 0.58
47 132402 6.1018884158392 1 VISp Wide Interneuron Unknown 2.7643086962433 103.8355588286 0.5
48 93826 4.3232987662575 1 VISp Wide Interneuron Unknown 2.0783151791614 94.628004002116 0.61
49 82819 3.8227028401068 1 VISp Narrow Interneuron Unknown 0.68824786582789 108.26295359579 0.21
50 77325 3.5629919196757 1 VISp Narrow Interneuron Unknown 1.6294859359845 55.967565367361 0.34
51 24185 1.1211905973252 1 VISp Pyramidal Cell Unknown 1.2404382881952 177.67090202394 0.62
52 55899 2.5757780205847 1 VISp Wide Interneuron Unknown 0.89447038408558 123.36712560689 0.6
53 20933 0.96685905266556 1 VISp Pyramidal Cell Unknown 2.3408016051211 123.2905061822 0.68
54 15089 0.69555723018177 1 VISp Pyramidal Cell Unknown 1.7231095500033 108.33153080405 0.61
55 8535 0.39358818605701 1 VISp Pyramidal Cell Unknown 0.82015231400117 154.68879669632 0.63
56 34400 1.5853120433637 1 VISp Wide Interneuron Unknown 0.58139534883721 168.61727510135 0.68
57 126590 5.8329581103365 1 VISp Wide Interneuron Unknown 1.1059325381152 116.71785616061 0.59
58 24097 1.1128846486656 1 VISp Wide Interneuron Unknown 0.78847989376271 137.3121866221 0.59
59 37252 1.7170991403087 1 VISp Wide Interneuron Unknown 2.1475357027811 96.038965664629 0.66
60 63092 2.9086423656356 1 VISp Narrow Interneuron Unknown 0.82419324161542 87.195398426646 0.29