Details for YMV12_171211
Date & time: 2017-12-11,
Location: Alexandria
Animal subject: YMV12
Investigator: Yuta Senzai
Experimenters: Yuta Senzai
Project: Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse
Data repositories: NYUshare_Datasets, download session from Web share
Created: 2019-01-08 13:41:26 by Yuta Senzai
Updated: 2020-06-27 18:42:47 by Peter Petersen ADMINNotes:
Epochs
Epochs | Behavioral paradigm | Maze type | Built maze | Manipulation | Duration | Notes |
---|---|---|---|---|---|---|
YMV12_171211 | Homecage_Sleep | Homecage | Homecage_Mouse | Light stimulation | 21717.504 |
Extracellular
Equipment |
File format |
Sampling rate |
nSamples |
nChannels |
Spike groups |
Least significant bit |
---|---|---|---|---|---|---|
Intan Technologies, RHD2000 USB interface board (256ch) | dat | 20000 | 434350080 | 64 | 1 | 0.195 |
Implanted probes
YMV01 : Silicon probe Cambridge Neurotech H3 (64 ch, 1 shanks, linear ) | Region: VISp | Coordinates: 1.0, 2.5,
Spike groups
Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.
Group |
Channels |
Label |
---|---|---|
1 | 23, 14, 16, 25, 12, 21, 8, 10, 22, 9, 26, 13, 11, 24, 15, 28, 27, 6, 19, 29, 4, 20, 32, 63, 1, 2, 31, 17, 3, 30, 7, 5, 37, 60, 45, 35, 62, 46, 34, 48, 18, 64, 33, 47, 61, 36, 57, 59, 41, 52, 50, 39, 54, 43, 58, 56, 44, 55, 40, 51, 53, 42, 49, 38 |
Equipment |
Input type |
Channel |
Tag |
Description |
---|---|---|---|---|
Intan Technologies, RHD2000 USB interface board (256ch) | adc | 7 | Stim | opto and light stim |
Equipment |
File names |
Epoch |
Type |
Framerate |
Notes |
---|
Brain region |
Channels |
Spike groups |
---|---|---|
VISp – Primary visual area (View in Atlas) | 1:64 | 1 |
Channel tags
Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.
Tag |
Channels |
Spike groups |
---|
Analysis tags
Tag |
Value |
Description |
---|
Spike sorting
Method |
Format |
Relative path |
Channels |
Spike sorter |
Notes |
Sorting completed |
Units count |
Sorting ID |
---|---|---|---|---|---|---|---|---|
KiloSort | Phy | Yuta Senzai | Yes | 60 | 22858 |
Spike sorted units
# | Spike count | Firing rate (Hz) | Spike group | Brain region | Cell type | Deep/Superficial | Refractory violation (‰) | Peak voltage (µV) | Trough-to-Peak (ms) | Isolation distance | |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | 132709 | 6.1149281600077 | 1 | VISp | Narrow Interneuron | Unknown | 6.796826138393 | 107.76588144027 | 0.28 | ||
2 | 63346 | 2.9255666382007 | 1 | VISp | Narrow Interneuron | Unknown | 4.7043222934361 | 61.843358081658 | 0.32 | ||
3 | 19687 | 0.9077044296292 | 1 | VISp | Pyramidal Cell | Unknown | 2.5905419820186 | 121.09154115623 | 0.61 | ||
4 | 68923 | 3.1759732579577 | 1 | VISp | Pyramidal Cell | Unknown | 0.2756699505245 | 210.31167615584 | 0.57 | ||
5 | 38297 | 1.7655743480271 | 1 | VISp | Pyramidal Cell | Unknown | 0.47001070579941 | 194.8769672699 | 0.58 | ||
6 | 227728 | 10.493194156008 | 1 | VISp | Wide Interneuron | Unknown | 2.4239443546687 | 178.45526937903 | 0.53 | ||
7 | 12917 | 0.59903694735558 | 1 | VISp | Pyramidal Cell | Unknown | 0.9290082836572 | 286.41736311545 | 0.64 | ||
8 | 76955 | 3.5463668046979 | 1 | VISp | Pyramidal Cell | Unknown | 0.038983821713989 | 119.40611067596 | 0.59 | ||
9 | 109242 | 5.0344216053658 | 1 | VISp | Pyramidal Cell | Unknown | 0.21969572142583 | 104.58495932964 | 0.7 | ||
10 | 67737 | 3.1232463885282 | 1 | VISp | Wide Interneuron | Unknown | 0.19191874455615 | 250.1493022183 | 0.68 | ||
11 | 196671 | 9.0841773179532 | 1 | VISp | Pyramidal Cell | Unknown | 0.24914705269206 | 108.09809331042 | 0.6 | ||
12 | 14352 | 0.6615651780264 | 1 | VISp | Pyramidal Cell | Unknown | 0.90579710144928 | 130.42816068737 | 0.67 | ||
13 | 4229 | 0.19638104378131 | 1 | VISp | Wide Interneuron | Unknown | 0.23646252069047 | 194.18688326964 | 0.69 | ||
14 | 24361 | 1.1232369848349 | 1 | VISp | Pyramidal Cell | Unknown | 4.4333155453389 | 143.82696479457 | 0.59 | ||
15 | 61546 | 2.8373735575469 | 1 | VISp | Wide Interneuron | Unknown | 0.27621616351997 | 122.25658398556 | 0.67 | ||
16 | 304459 | 14.029259576276 | 1 | VISp | Narrow Interneuron | Unknown | 0.50909974742083 | 156.98662526636 | 0.27 | ||
17 | 69160 | 3.1884146326508 | 1 | VISp | Pyramidal Cell | Unknown | 0.3903990746096 | 95.244508929543 | 0.6 | ||
18 | 12563 | 0.58129268276748 | 1 | VISp | Pyramidal Cell | Unknown | 25.073628910292 | 281.0726560655 | 0.56 | ||
19 | 57559 | 2.6530553222601 | 1 | VISp | Pyramidal Cell | Unknown | 94.511718410674 | 106.95556274782 | 0.58 | ||
20 | 17984 | 0.83010045233251 | 1 | VISp | Pyramidal Cell | Unknown | 0.11120996441281 | 176.0741423367 | 0.73 | ||
21 | 11806 | 0.54438327039015 | 1 | VISp | Pyramidal Cell | Unknown | 0.16940538709131 | 198.43844764974 | 0.58 | ||
22 | 28721 | 1.326831086436 | 1 | VISp | Pyramidal Cell | Unknown | 0.20890637512621 | 117.31782649508 | 0.62 | ||
23 | 35467 | 1.6348763831532 | 1 | VISp | Pyramidal Cell | Unknown | 0.62029492204021 | 203.85586918225 | 0.6 | ||
24 | 20241 | 0.93483961654653 | 1 | VISp | Pyramidal Cell | Unknown | 0.54345141050343 | 259.42210444253 | 0.67 | ||
25 | 127063 | 5.8552003286152 | 1 | VISp | Wide Interneuron | Unknown | 0.3069343553985 | 41.45632891463 | 0.58 | ||
26 | 16444 | 0.86250152438516 | 1 | VISp | Pyramidal Cell | Unknown | 1.5203113597665 | 113.51554317802 | 0.57 | ||
27 | 112944 | 5.2056362156698 | 1 | VISp | Narrow Interneuron | Unknown | 2.4171270718232 | 60.561345702499 | 0.4 | ||
28 | 314907 | 14.510272798262 | 1 | VISp | Pyramidal Cell | Unknown | 0.83516720809636 | 30.447432723812 | 0.51 | ||
29 | 68065 | 3.1442301516233 | 1 | VISp | Pyramidal Cell | Unknown | 0.058767354734445 | 224.61344729122 | 0.58 | ||
30 | 183044 | 8.4351026341749 | 1 | VISp | Wide Interneuron | Unknown | 0.96698061668233 | 133.96208719508 | 0.57 | ||
31 | 60887 | 2.8065564176184 | 1 | VISp | Pyramidal Cell | Unknown | 0.36132507760277 | 109.39959416442 | 0.56 | ||
32 | 5198 | 0.57502505557184 | 1 | VISp | Pyramidal Cell | Unknown | 0.38476337052713 | 122.24521399156 | 0.57 | ||
33 | 49124 | 2.2643517976309 | 1 | VISp | Pyramidal Cell | Unknown | 1.0992590179953 | 73.756478717274 | 0.73 | ||
34 | 85108 | 3.9221983376959 | 1 | VISp | Pyramidal Cell | Unknown | 6.0746345819429 | 64.714994494611 | 0.59 | ||
35 | 87254 | 4.0206380279865 | 1 | VISp | Narrow Interneuron | Unknown | 4.9281408302198 | 96.297915439942 | 0.34 | ||
36 | 75927 | 3.4987504179727 | 1 | VISp | Wide Interneuron | Unknown | 3.608729437486 | 86.029349534702 | 0.72 | ||
37 | 30038 | 2.0622596306059 | 1 | VISp | Pyramidal Cell | Unknown | 1.3649377455223 | 97.570302029788 | 0.62 | ||
38 | 63351 | 2.9199532301397 | 1 | VISp | Pyramidal Cell | Unknown | 3.7094915628798 | 61.322092730634 | 0.59 | ||
39 | 112235 | 5.1717003478711 | 1 | VISp | Narrow Interneuron | Unknown | 2.9758987838018 | 57.791666683251 | 0.27 | ||
40 | 92581 | 4.2661618967221 | 1 | VISp | Wide Interneuron | Unknown | 3.0891867661831 | 106.08940783734 | 0.52 | ||
41 | 26261 | 1.2107811743809 | 1 | VISp | Pyramidal Cell | Unknown | 2.7797875176117 | 148.14173442385 | 0.61 | ||
42 | 78455 | 3.6151274534829 | 1 | VISp | Narrow Interneuron | Unknown | 2.9316168504238 | 79.880964199651 | 0.35 | ||
43 | 76461 | 3.5241856231953 | 1 | VISp | Wide Interneuron | Unknown | 5.7022534363924 | 83.42185278163 | 0.68 | ||
44 | 40240 | 1.8580119760831 | 1 | VISp | Pyramidal Cell | Unknown | 1.1679920477137 | 125.58781445852 | 0.67 | ||
45 | 40219 | 1.8540342130001 | 1 | VISp | Narrow Interneuron | Unknown | 4.0279469902285 | 79.694535992084 | 0.33 | ||
46 | 38316 | 1.765695339071 | 1 | VISp | Wide Interneuron | Unknown | 2.5837770122142 | 52.628252612288 | 0.58 | ||
47 | 132402 | 6.1018884158392 | 1 | VISp | Wide Interneuron | Unknown | 2.7643086962433 | 103.8355588286 | 0.5 | ||
48 | 93826 | 4.3232987662575 | 1 | VISp | Wide Interneuron | Unknown | 2.0783151791614 | 94.628004002116 | 0.61 | ||
49 | 82819 | 3.8227028401068 | 1 | VISp | Narrow Interneuron | Unknown | 0.68824786582789 | 108.26295359579 | 0.21 | ||
50 | 77325 | 3.5629919196757 | 1 | VISp | Narrow Interneuron | Unknown | 1.6294859359845 | 55.967565367361 | 0.34 | ||
51 | 24185 | 1.1211905973252 | 1 | VISp | Pyramidal Cell | Unknown | 1.2404382881952 | 177.67090202394 | 0.62 | ||
52 | 55899 | 2.5757780205847 | 1 | VISp | Wide Interneuron | Unknown | 0.89447038408558 | 123.36712560689 | 0.6 | ||
53 | 20933 | 0.96685905266556 | 1 | VISp | Pyramidal Cell | Unknown | 2.3408016051211 | 123.2905061822 | 0.68 | ||
54 | 15089 | 0.69555723018177 | 1 | VISp | Pyramidal Cell | Unknown | 1.7231095500033 | 108.33153080405 | 0.61 | ||
55 | 8535 | 0.39358818605701 | 1 | VISp | Pyramidal Cell | Unknown | 0.82015231400117 | 154.68879669632 | 0.63 | ||
56 | 34400 | 1.5853120433637 | 1 | VISp | Wide Interneuron | Unknown | 0.58139534883721 | 168.61727510135 | 0.68 | ||
57 | 126590 | 5.8329581103365 | 1 | VISp | Wide Interneuron | Unknown | 1.1059325381152 | 116.71785616061 | 0.59 | ||
58 | 24097 | 1.1128846486656 | 1 | VISp | Wide Interneuron | Unknown | 0.78847989376271 | 137.3121866221 | 0.59 | ||
59 | 37252 | 1.7170991403087 | 1 | VISp | Wide Interneuron | Unknown | 2.1475357027811 | 96.038965664629 | 0.66 | ||
60 | 63092 | 2.9086423656356 | 1 | VISp | Narrow Interneuron | Unknown | 0.82419324161542 | 87.195398426646 | 0.29 |