Details for Peter_MS10_170307_154746_concat

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  • Date & time: 2017-03-07, 15:47:46

  • Location: Alexandria

  • Animal subject: MS10

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-01-09 9:37:14 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:40:08 by Peter Petersen

  • Notes:
    recordingID 64. Cooling during exploration on the circular maze. Second behavioral session after reimplant with cooling

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS10_170307_154746 Homecage_Sleep Homecage Homecage_Rat 2807.424
Peter_MS10_170307_164726 Homecage_Sleep Homecage Homecage_Rat 3486.636
Peter_MS10_170307_175258 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 5497.416
Peter_MS10_170307_183503 Homecage_Sleep Homecage Homecage_Rat 18891

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 377820000 64 7 0.195

Implanted probes

MS10 : Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, -2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 18, 19, 20
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 3 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5,6,7,8 ArduinoRemote Remote Button A-D
Intan Technologies, RHD2000 USB interface board (256ch) adc 3 ch_opto_on
Intan Technologies, RHD2000 USB interface board (256ch) adc 4 ch_opto_off
dig 3 ch_camera_sync

Equipment

File names

Epoch

Type

Framerate

Notes
Point Grey, Chameleon3 1.3 MP Color USB3 Vision (ON Semi PYTHON 1300) Basler acA1300-200uc (21965891)_20170307_175300966.avi 1 Video 40
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 47
Cortical 7
Ripple 47 3
Bad 28, 25, 26, 24, 33, 32, 31, 6
RippleNoise 19

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
linear_track_slope 10,-10,0 degrees of incline of linear track
CoolingSession 1
pos_x_limits -70,240
pos_y_limits -30,30
cooling_onsets 337.9640 8*60+8+154.2841
cooling_offsets 1117.964 8*60+8+13*60+154.2841
time_frame 0, 5435

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2017-04-07_110007 Peter Petersen Yes 30 22955

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 121422 6.4275667625304 3 CA1 Pyramidal Cell Unknown 14.931396287328 65.180110428432 0.64
2 54453 2.8828582376022 2 CA1 Pyramidal Cell Unknown 12.39601123905 87.036350237338 0.69
3 41082 2.1752488937686 4 CA1 Pyramidal Cell Unknown 8.7873034418967 188.49632980202 0.7
4 16644 0.88145156452251 4 CA1 Pyramidal Cell Unknown 5.407354001442 157.12938412042 0.73
5 67145 3.5546274519481 4 CA1 Pyramidal Cell Unknown 22.101422295033 84.638964853022 0.72
6 1831 0.097024179138153 4 CA1 Pyramidal Cell Unknown 3.8230475150191 224.196867981 0.68
7 210924 11.165399652256 4 CA1 Narrow Interneuron Unknown 3.7786122015513 134.88397728715 0.31
8 15563 0.82387928370179 3 CA1 Wide Interneuron Unknown 0.64254963695946 77.890558064677 0.65
9 33717 1.7848897056398 2 CA1 Pyramidal Cell Unknown 5.6944568022066 101.39336515688 0.74
10 58671 3.1058227925589 2 CA1 Pyramidal Cell Unknown 13.822842630942 129.77438586909 0.74
11 18127 0.96055326935688 4 CA1 Narrow Interneuron Unknown 3.1996469355106 125.71517427371 0.31
12 61432 3.2522719600192 5 CA1 Pyramidal Cell Unknown 14.129443938013 97.514661446773 0.68
13 2002 0.1060524970561 3 CA1 Unknown Unknown 1.998001998002 120.25464966364 0.63
14 17111 0.906044479482 2 CA1 Pyramidal Cell Unknown 2.5130033311905 257.60022671161 0.72
15 3859 0.2050051723299 2 CA1 Pyramidal Cell Unknown 2.3322104172065 302.40141676071 0.74
16 121422 6.4275667625304 3 CA1 Pyramidal Cell Deep 14.931396287328 65.253487123079 0.7
17 54453 2.8828582376022 2 CA1 Pyramidal Cell Superficial 12.39601123905 81.098939464188 0.65
18 41082 2.1752488937686 4 CA1 Pyramidal Cell Superficial 8.7873034418967 193.87674868216 0.71
19 16644 0.88145156452251 4 CA1 Pyramidal Cell Superficial 5.407354001442 158.18292164348 0.7
20 67145 3.5546274519481 4 CA1 Pyramidal Cell Superficial 22.101422295033 84.109902256318 0.72
21 1831 0.097024179138153 4 CA1 Pyramidal Cell Superficial 3.8230475150191 227.9984659804 0.68
22 18127 0.96055326935688 4 CA1 Narrow Interneuron Superficial 3.1996469355106 127.92429388975 0.3
23 210924 11.165399652256 4 CA1 Narrow Interneuron Superficial 3.7786122015513 133.67156248965 0.32
24 58671 3.1058227925589 2 CA1 Pyramidal Cell Deep 13.822842630942 125.62355522096 0.7
25 33717 1.7848897056398 2 CA1 Pyramidal Cell Deep 5.6944568022066 101.41956409038 0.73
26 15563 0.82387928370179 3 CA1 Wide Interneuron Deep 0.64254963695946 78.086889712623 0.64
27 61432 3.2522719600192 5 CA1 Pyramidal Cell Deep 14.129443938013 96.301358430767 0.71
28 2002 0.1060524970561 1 CA1 Pyramidal Cell Deep 1.998001998002 33.641779306692 0.75
29 17111 0.906044479482 2 CA1 Pyramidal Cell Deep 2.5130033311905 254.91723036376 0.79
30 3859 0.2050051723299 2 CA1 Pyramidal Cell Deep 2.3322104172065 303.04631120474 0.77