Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch)	dat	20000	368053200	64	6	0.195

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Implanted probes

PV8 : Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: , ,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	51, 58, 52, 57, 49, 60, 50, 59, 54, 55, 53, 56
2	63, 38, 64, 39, 61, 41, 62, 42, 33, 37, 34, 35
3	47, 17, 46, 20, 45, 19, 43, 21, 48, 18, 44, 22
4	28, 1, 25, 2, 23, 3, 24, 4, 27, 31, 29, 32
5	8, 13, 7, 14, 6, 15, 5, 16, 9, 12, 10, 11
6	30, 36, 26, 40

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
Intan Technologies, RHD2000 USB interface board (256ch)	adc	0	StimShank1
Intan Technologies, RHD2000 USB interface board (256ch)	adc	1	StimShank1
Intan Technologies, RHD2000 USB interface board (256ch)	adc	2	StimShank3
Intan Technologies, RHD2000 USB interface board (256ch)	adc	3	StimShank4

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Equipment	File names	Epoch	Type	Framerate	Notes

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)	1:64

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Ripple	28	4
Theta	28	4

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Neurosuite			Sam McKenzie		Yes	144	28109

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	4288	0.24679547258885	5	HIP	Pyramidal Cell	Deep	3.0317164179104	315.96100969909	0.7	30.246510785994
2	24476	1.3926358484877	5	HIP	Pyramidal Cell	Deep	6.8230102958	112.32115580504	0.7	24.546152592329
3	31623	1.7993481208078	5	HIP	Pyramidal Cell	Deep	4.1109319166429	104.46963542293	0.71	23.572168125687
4	30580	1.739853299871	5	HIP	Pyramidal Cell	Deep	5.3629823413996	95.901861280171	0.71	35.712068371727
5	7380	0.41994810158449	5	HIP	Pyramidal Cell	Deep	2.0325203252033	123.81981080902	0.6	19.117639465594
6	22154	1.2602830519847	5	HIP	Pyramidal Cell	Superficial	8.0346664259276	130.92440781779	0.71	19.670281757576
7	20699	1.1780353250559	5	HIP	Pyramidal Cell	Deep	2.9953137832746	158.68196266551	0.71	30.859070842504
8	40612	2.3110278167894	5	HIP	Pyramidal Cell	Deep	9.2829705505762	218.33368128638	0.68	29.300309189908
9	26451	1.5047868289629	5	HIP	Pyramidal Cell	Deep	10.245359343692	115.56679359312	0.71	22.932328799623
10	17553	0.99880100349542	5	HIP	Pyramidal Cell	Deep	12.020737195921	148.30551224989	0.73	18.297901682701
11	26005	1.4793054791327	5	HIP	Pyramidal Cell	Superficial	10.344164583734	114.90912354903	0.69	26.491065887306
12	27785	1.5811112804073	5	HIP	Pyramidal Cell	Superficial	9.2495951052726	66.690529948501	0.71	26.959393294647
13	16016	0.91148642461309	5	HIP	Pyramidal Cell	Deep	20.22977022977	213.85034253528	0.71	24.695035060051
14	27790	1.5816451711327	5	HIP	Pyramidal Cell	Deep	19.395465994962	363.44581639998	0.61	71.656695182282
15	12258	0.69752234350482	5	HIP	Pyramidal Cell	Deep	15.33692282591	135.65953825266	0.62	17.865567792063
16	348553	19.827078081035	5	HIP	Narrow Interneuron	Deep	39.116002444392	101.82888907041	0.26	68.662493704459
17	14141	0.8050821320555	5	HIP	Pyramidal Cell	Deep	4.1015486882116	190.47220342227	0.69	24.384748965601
18	67992	3.8686294859426	5	HIP	Pyramidal Cell	Deep	3.618072714437	199.51639122479	0.64	39.786989500965
19	106232	6.0443842964709	5	HIP	Pyramidal Cell	Deep	13.903531892462	156.42974842342	0.69	38.590440372086
20	172713	9.8247194071247	5	HIP	Narrow Interneuron	Deep	4.4756329865152	83.423468253038	0.24	51.526390658779
21	11370	0.64716785401951	5	HIP	Pyramidal Cell	Deep	5.8047493403694	266.20014221767	0.74	26.618615875454
22	26229	1.500947920801	5	HIP	Pyramidal Cell	Deep	7.7013992146098	197.926705677	0.71	28.90664797926
23	45227	2.6139625799238	5	HIP	Pyramidal Cell	Deep	3.3166029141884	107.78788303671	0.39	43.203415251933
24	29234	1.663401679935	5	HIP	Pyramidal Cell	Deep	2.2918519532052	108.60991441701	0.68	35.484199599884
25	11762	0.66931018392632	5	HIP	Pyramidal Cell	Deep	4.7610950518619	246.12185113809	0.75	22.207398656513
26	132502	7.537241774297	5	HIP	Wide Interneuron	Deep	0.52829391254472	73.314222448698	0.5	61.34702735997
27	22186	1.2621070596336	5	HIP	Pyramidal Cell	Deep	9.2400612999189	92.936561007561	0.71	22.786731714597
28	24269	1.4069015235687	5	HIP	Pyramidal Cell	Superficial	1.2773497053855	219.04164023485	0.7	64.152664075498
29	3440	0.25361338434019	5	HIP	Pyramidal Cell	Deep	13.372093023256	182.39367566734	0.71	21.392429855067
30	25943	1.4763639610082	5	HIP	Pyramidal Cell	Deep	9.6750568554138	99.280205298804	0.71	24.89403466821
31	47757	2.718048090311	5	HIP	Wide Interneuron	Superficial	0.083757354942731	56.652371922204	0.42	80.595918289266
32	9504	0.61160761363702	5	HIP	Pyramidal Cell	Deep	2.8409090909091	217.55170930968	0.73	38.395111960071
33	26733	1.5452431134667	5	HIP	Pyramidal Cell	Deep	8.0799012456514	149.84338211382	0.7	33.35964676176
34	35078	2.0068178314775	5	HIP	Pyramidal Cell	Deep	16.420548491932	106.2283162446	0.72	25.836314536309
35	30558	1.7385493698353	5	HIP	Pyramidal Cell	Deep	11.551803128477	104.99154290254	0.68	29.55105458995
36	4574	0.26110899910681	5	HIP	Pyramidal Cell	Deep	0.65588106689987	209.63463911658	0.67	27.036810803641
37	2631	0.15018017554042	5	HIP	Pyramidal Cell	Deep	0.38008361839605	302.71014131126	0.58	36.450478208013
38	34236	1.9498005909446	4	HIP	Pyramidal Cell	Deep	6.5720294426919	183.95366337234	0.72	30.738515130067
39	36636	2.0839983771707	4	HIP	Pyramidal Cell	Superficial	4.4764712304837	114.56316269384	0.73	40.221735668631
40	24629	1.4037592432009	4	HIP	Pyramidal Cell	Deep	6.9836371756872	234.22840199268	0.72	39.308874641272
41	85055	4.8398324027863	4	HIP	Wide Interneuron	Deep	0.39974134383634	99.116054802724	0.57	61.49455907846
42	14340	0.81686891967052	4	HIP	Pyramidal Cell	Deep	1.7433751743375	214.97679271197	0.7	50.007760607407
43	12173	0.69314255811974	4	HIP	Pyramidal Cell	Deep	0.082149018319231	221.97703029895	0.71	54.295053003565
44	27938	1.5896932343281	4	HIP	Pyramidal Cell	Deep	3.042451141814	144.08979046196	0.71	29.549152148458
45	18587	1.0610650621382	4	HIP	Pyramidal Cell	Deep	0.86081669984398	148.49670293365	0.68	35.700485738548
46	29829	1.6970002546524	4	HIP	Pyramidal Cell	Deep	4.0899795501022	146.46643405269	0.7	36.290898849204
47	127075	7.23034404159	4	HIP	Wide Interneuron	Superficial	3.9897698209719	88.96335160194	0.69	58.350877665836
48	6065	0.35141863923941	4	HIP	Pyramidal Cell	Deep	0.65952184666117	247.59738462995	0.74	49.270815858794
49	22664	1.2896202630799	4	HIP	Pyramidal Cell	Superficial	5.6918460995411	92.841042550184	0.73	26.893895785726
50	39366	2.2393049446832	4	HIP	Pyramidal Cell	Superficial	7.2143474063913	53.739904262651	0.65	36.82852158618
51	47490	2.7017681476725	4	HIP	Pyramidal Cell	Deep	5.3274373552327	86.256983458813	0.66	39.648337924161
52	36960	2.1024728305872	4	HIP	Pyramidal Cell	Deep	9.4155844155844	54.137433459	0.72	31.912381830961
53	34557	1.9666131773719	4	HIP	Pyramidal Cell	Superficial	2.8358943195301	75.462238441646	0.69	38.626598870303
54	46242	2.6332619340587	4	HIP	Pyramidal Cell	Deep	9.6881622767181	116.31512642551	0.73	40.657399545051
55	5976	0.34276748054786	4	HIP	Pyramidal Cell	Deep	0.1673360107095	183.67726918793	0.3	57.282300538134
56	14002	0.79668319653434	4	HIP	Pyramidal Cell	Deep	2.7138980145693	153.31015665043	0.7	31.655115136081
57	15792	0.89901588587314	4	HIP	Pyramidal Cell	Deep	4.9392097264438	157.06725807608	0.68	32.205507741679
58	28065	1.5972041182359	4	HIP	Pyramidal Cell	Deep	3.2068412613576	143.02312404574	0.69	41.435669642437
59	5531	0.31614122919802	4	HIP	Pyramidal Cell	Deep	1.8079913216417	85.332151447933	0.66	29.611847067735
60	64305	3.6589905789826	4	HIP	Pyramidal Cell	Deep	9.0817199284659	106.85372241107	0.73	45.477092527826
61	3324	0.2174971020425	4	HIP	Pyramidal Cell	Deep	0.90252707581227	295.38329902291	0.74	39.133628030998
62	80594	4.5847504132477	3	HIP	Narrow Interneuron	Deep	3.3625331910564	107.18629112231	0.28	74.142515895996
63	6605	0.37607289204788	3	HIP	Pyramidal Cell	Deep	2.2710068130204	114.1777953743	0.72	28.566060847352
64	16166	0.91984853475642	3	HIP	Pyramidal Cell	Superficial	9.2168749226772	83.394148024507	0.72	24.679809173054
65	7739	0.44038225373098	3	HIP	Pyramidal Cell	Superficial	3.7472541672051	136.92138075321	0.69	32.121055474358
66	66020	3.7555523063436	3	HIP	Pyramidal Cell	Deep	7.270524083611	109.17047261715	0.73	49.103239402863
67	55723	3.1703310765142	3	HIP	Pyramidal Cell	Deep	6.9091757443067	116.28932734392	0.74	47.23521566378
68	8473	0.49421111557966	3	HIP	Pyramidal Cell	Deep	0.11802195208309	430.58562320304	0.74	88.701563246544
69	9032	0.52345197872005	3	HIP	Pyramidal Cell	Deep	0.77502214348981	223.69840517606	0.67	55.579296417847
70	2973	0.18210843268993	3	HIP	Pyramidal Cell	Deep	0.67272115708039	292.58216991582	0.71	47.227447824964
71	38239	2.1766420223628	3	HIP	Pyramidal Cell	Superficial	13.572530662413	107.26494050747	0.67	34.592344514011
72	8768	0.75412366439457	3	HIP	Pyramidal Cell	Deep	0.91240875912409	263.43784593763	0.45	41.013375841136
73	2388	0.26463744124762	3	HIP	Pyramidal Cell	Deep	0	366.34856460225	0.54	55.166547525219
74	11911	0.67760768408365	3	HIP	Pyramidal Cell	Deep	3.6101083032491	246.84530551248	0.74	34.388442044304
75	8473	0.48212349881057	3	HIP	Pyramidal Cell	Deep	0.82615366458161	297.16633787388	0.71	52.967892540467
76	17558	0.99910239827964	3	HIP	Pyramidal Cell	Superficial	3.8159243649618	148.17132188072	0.67	52.99611404189
77	9455	0.53998471908923	3	HIP	Pyramidal Cell	Deep	2.432575356954	199.6519952243	0.77	26.053345620375
78	27952	1.5905195475461	3	HIP	Pyramidal Cell	Deep	2.146536920435	280.57351600654	0.73	36.394388612764
79	47356	2.6952273497347	3	HIP	Pyramidal Cell	Superficial	4.6034293436946	140.87367211335	0.71	41.586220299812
80	75604	4.3018080327781	3	HIP	Pyramidal Cell	Deep	0.89942331093593	117.20327148096	0.72	45.607396405473
81	38775	2.2058099783306	3	HIP	Pyramidal Cell	Deep	6.3185041908446	104.19574338384	0.71	41.812972725355
82	149257	8.4905558842146	3	HIP	Wide Interneuron	Superficial	0.38189163657316	67.049507372642	0.54	128.03580565153
83	53200	3.0270037496696	3	HIP	Pyramidal Cell	Deep	2.7067669172932	423.01435230479	0.73	41.829023361018
84	202707	11.53085385968	3	HIP	Narrow Interneuron	Deep	2.2248861657466	181.53112013406	0.26	208.1770202866
85	7470	0.42507247727579	3	HIP	Pyramidal Cell	Superficial	1.8741633199465	111.11742815186	0.66	20.198546375087
86	33303	1.89438902086	3	HIP	Pyramidal Cell	Deep	1.5614208930126	172.14240841418	0.68	50.685905192905
87	39573	2.2514123938929	2	HIP	Narrow Interneuron	Deep	3.1334495742046	107.15193386236	0.34	58.340476995621
88	53716	3.0557974181754	2	HIP	Pyramidal Cell	Superficial	8.8614193164048	63.088928116497	0.64	54.835201545443
89	59025	3.3584732529099	2	HIP	Pyramidal Cell	Deep	11.43583227446	116.62386295166	0.72	42.887748945027
90	20743	1.1822903551847	2	HIP	Pyramidal Cell	Superficial	4.7726944029311	113.04779549098	0.68	35.607853056877
91	14118	0.80315887539837	2	HIP	Pyramidal Cell	Superficial	3.8249043773906	100.1247332125	0.67	34.907658879759
92	40635	2.3120407589202	2	HIP	Narrow Interneuron	Deep	9.5238095238095	104.87403054981	0.24	50.394047430489
93	64407	3.6642266792449	2	HIP	Pyramidal Cell	Deep	4.0989333457543	252.90264974632	0.7	64.147584435537
94	71290	4.0558341062924	2	HIP	Pyramidal Cell	Deep	4.8954972646935	132.31959189679	0.71	78.800334062329
95	33059	1.8846059037453	2	HIP	Pyramidal Cell	Deep	1.9056837774887	199.82362152303	0.77	61.224927924527
96	8604	0.48964703266671	2	HIP	Pyramidal Cell	Superficial	1.7433751743375	155.04477224372	0.69	46.384677548978
97	51399	2.9245610226736	2	HIP	Pyramidal Cell	Superficial	0.89495904589583	212.72730836631	0.72	79.514632974116
98	14113	0.80340772390937	2	HIP	Pyramidal Cell	Superficial	5.8811025295827	86.061223841163	0.63	47.350997870379
99	29013	1.6522369098387	2	HIP	Pyramidal Cell	Deep	0.86168269396477	334.05573877663	0.72	55.554704351078
100	8648	0.49220297667604	2	HIP	Pyramidal Cell	Superficial	1.6188714153562	98.497379516474	0.65	46.212246725456
101	3305	0.189821186633	2	HIP	Pyramidal Cell	Superficial	0	149.05356098347	0.62	52.073741833635
102	1785	0.10324407368389	2	HIP	Pyramidal Cell	Superficial	0	180.77075868414	0.65	70.509637961907
103	27431	1.5608439087156	2	HIP	Pyramidal Cell	Superficial	7.6920272684189	50.461290356815	0.76	43.234618183246
104	89424	5.0893689522838	2	HIP	Pyramidal Cell	Deep	0.90579710144928	265.00600670791	0.7	56.165125047919
105	36405	2.0710243714058	2	HIP	Pyramidal Cell	Superficial	7.608844938882	99.366019750616	0.62	43.937359396584
106	13878	0.78951878596746	1	HIP	Pyramidal Cell	Deep	2.5219772301484	206.66238538369	0.72	33.812348360503
107	30591	1.7461948858809	1	HIP	Pyramidal Cell	Deep	1.2421954169527	150.98251470727	0.6	48.083022170589
108	34617	1.9692659181994	1	HIP	Pyramidal Cell	Deep	5.2575324262646	70.959470713006	0.7	30.035745959714
109	3662	0.20845639276413	1	HIP	Pyramidal Cell	Deep	21.299836155106	898.66242698232	0.39	105.62920176745
110	8264	0.47044401598086	1	HIP	Pyramidal Cell	Deep	0.84704743465634	198.82113959055	0.71	58.56358909152
111	50918	2.8974873191753	1	HIP	Pyramidal Cell	Deep	14.925959385679	149.35593549626	0.73	26.065133063582
112	236533	13.455100725422	1	HIP	Narrow Interneuron	Deep	1.297916147007	236.11162772594	0.39	59.729716724607
113	267374	15.209386277964	1	HIP	Narrow Interneuron	Deep	12.817252238438	132.24803421221	0.27	64.136438156637
114	18454	1.1316780094585	1	HIP	Pyramidal Cell	Deep	0.2167551750298	254.48595777101	0.72	155.41257924955
115	14195	0.80772699583202	1	HIP	Pyramidal Cell	Deep	2.4656569214512	374.0007461046	0.72	73.894380419241
116	81416	4.6313000294001	1	HIP	Narrow Interneuron	Deep	4.9130392060529	89.559187827434	0.22	107.04649397413
117	66208	3.7663344233847	1	HIP	Pyramidal Cell	Superficial	4.5311744804253	76.616883927473	0.67	38.307933821931
118	30900	1.7585494177726	1	HIP	Pyramidal Cell	Deep	9.546925566343	284.42408888281	0.72	22.279031138283
119	20095	1.1434273047356	1	HIP	Pyramidal Cell	Deep	7.066434436427	105.89816439516	0.71	14.181954951523
120	38624	2.197701710079	1	HIP	Pyramidal Cell	Deep	0.46603148301574	385.43605840267	0.72	71.145055867113
121	16424	0.93468386577552	1	HIP	Pyramidal Cell	Deep	2.0701412566975	128.14374090003	0.74	23.483515960808
122	18998	1.0810055503615	1	HIP	Pyramidal Cell	Deep	8.7903989893673	145.58714028085	0.73	16.592821374171
123	13411	0.76306580563492	1	HIP	Pyramidal Cell	Deep	4.8467675788532	212.07418482964	0.74	38.417943579121
124	29553	1.6819025115739	1	HIP	Pyramidal Cell	Deep	0.067675024532196	216.97791523619	0.7	82.189145296117
125	27690	1.5751869990584	1	HIP	Pyramidal Cell	Superficial	8.4507042253521	81.789926854312	0.61	29.621864194568
126	69152	3.9417649487974	1	HIP	Pyramidal Cell	Deep	10.2238546969	153.57581257269	0.69	39.290261175998
127	9237	0.52564912353073	1	HIP	Pyramidal Cell	Deep	8.0112590667966	173.42816650382	0.71	20.243104355603
128	2402	0.13777934468163	1	HIP	Pyramidal Cell	Deep	0.83263946711074	113.93385682975	0.73	63.963862739208
129	7824	0.57009586408967	1	HIP	Wide Interneuron	Deep	4.0899795501022	384.52638520508	0.72	84.951320321088
130	24832	1.4125939744112	1	HIP	Pyramidal Cell	Deep	0.76514175257732	418.82477807831	0.67	59.49673766751
131	10315	0.58698560108671	1	HIP	Pyramidal Cell	Deep	1.5511391177896	264.81206223216	0.71	31.463457282134
132	8724	0.49642205539119	1	HIP	Pyramidal Cell	Deep	1.1462631820266	148.51379974412	0.74	24.898395907165
133	26770	1.5230260950296	1	HIP	Pyramidal Cell	Deep	1.1206574523721	203.57026984229	0.67	55.724040446324
134	14294	0.81319627192917	1	HIP	Pyramidal Cell	Deep	0.4197565412061	587.50946287873	0.58	71.067990533166
135	29967	1.7048391116046	1	HIP	Pyramidal Cell	Deep	2.9365635532419	128.63314621954	0.69	27.173762295084
136	26324	1.4978982991468	1	HIP	Pyramidal Cell	Deep	4.3306488375627	137.97225796232	0.74	37.61794419475
137	117975	6.7298393650235	1	HIP	Narrow Interneuron	Deep	35.609239245603	165.72806839264	0.12	40.99626666392
138	1287	0.073289054425218	1	HIP	Pyramidal Cell	Deep	0.77700077700078	273.24490063208	0.33	28.924119345626
139	45004	2.5601944209504	1	HIP	Pyramidal Cell	Deep	14.909785796818	66.335361160965	0.76	26.31660853367
140	7314	0.41622829150931	1	HIP	Pyramidal Cell	Deep	0.1367240907848	246.76430875624	0.74	50.141472356451
141	29438	1.6745484343623	1	HIP	Pyramidal Cell	Deep	0.74733337862627	220.5398576323	0.73	36.893187794819
142	31354	1.7837216557027	1	HIP	Pyramidal Cell	Deep	1.1481788607514	73.313662642641	0.43	39.756453604746
143	46700	2.6566402220319	1	HIP	Pyramidal Cell	Deep	8.9935760171306	71.931358631068	0.73	28.432715776021
144	10975	0.62460074104965	1	HIP	Pyramidal Cell	Deep	0.91116173120729	239.47138750219	0.68	29.943826154115