Details for 20170125

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  • Date & time: 2017-01-25,

  • Animal subject: PV8

  • Investigator: Sam McKenzie

  • Experimenters: Dan English, Sam McKenzie

  • Project: Ground truth cell-types using various opto-tag approaches

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-04-02 15:42:47 by Peter Petersen ADMIN
    Updated: 2020-06-27 18:44:06 by Peter Petersen ADMIN

  • Notes:
    Optotagging in homecage

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
20160210 Homecage_Sleep Homecage Homecage_Mouse Light stimulation 32757.912

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 655158240 64 6 0.195

Implanted probes

PV8 : Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: , ,

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 51, 58, 52, 57, 49, 60, 50, 59, 54, 55, 53, 56
2 63, 38, 64, 39, 61, 41, 62, 42, 33, 37, 34, 35
3 47, 17, 46, 20, 45, 19, 43, 21, 48, 18, 44, 22
4 28, 1, 25, 2, 23, 3, 24, 4, 27, 31, 29, 32
5 8, 13, 7, 14, 6, 15, 5, 16, 9, 12, 10, 11
6 30, 36, 26, 40
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) adc 0 StimShank1
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 StimShank1
Intan Technologies, RHD2000 USB interface board (256ch) adc 2 StimShank3
Intan Technologies, RHD2000 USB interface board (256ch) adc 3 StimShank4

Equipment

File names

Epoch

Type

Framerate

Notes
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
HIP – Hippocampal region (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Ripple 28 4
Theta 28 4

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
Klustakwik Neurosuite Sam McKenzie Yes 101 28122

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 75037 2.2919850038565 5 HIP Pyramidal Cell Deep 3.7048389461199 109.39404414318 0.71 38.90816752004
2 14384 0.55822716428851 5 HIP Pyramidal Cell Deep 0.62569521690768 191.35734973371 0.66 41.893266283193
3 16699 0.51072268610369 5 HIP Pyramidal Cell Deep 3.8924486496197 287.37892923362 0.59 25.939844397999
4 63136 1.9273910346849 5 HIP Pyramidal Cell Deep 5.8920425747592 106.97332349271 0.73 36.353460002483
5 52897 1.6148124961052 5 HIP Pyramidal Cell Deep 4.7261659451387 93.763915324403 0.7 39.835195507216
6 248428 7.5837671842697 5 HIP Narrow Interneuron Deep 31.473907933083 95.537400847575 0.3 67.509401253328
7 42556 1.29921141613 5 HIP Pyramidal Cell Deep 7.4490083654479 206.84385091815 0.71 27.255588424201
8 33722 1.0294534894969 5 HIP Pyramidal Cell Deep 3.8550501156515 163.47374069542 0.71 28.643701775116
9 205149 6.2626265978089 5 HIP Pyramidal Cell Deep 21.574562878688 131.73504830977 0.79 44.811464949285
10 410264 12.529476572904 5 HIP Narrow Interneuron Deep 1.5745958699764 186.3133946975 0.31 102.24952499484
11 3465 0.12362764660121 5 HIP Pyramidal Cell Deep 0.57720057720058 392.37721476306 0.13 49.811177899016
12 6077 0.18955586339105 5 HIP Pyramidal Cell Deep 0 282.28389286431 0.8 49.784022053033
13 94323 2.8794058560637 5 HIP Pyramidal Cell Deep 5.6401938021479 87.417941927853 0.72 39.604551594333
14 85596 2.6130572433636 5 HIP Pyramidal Cell Deep 8.7737744754428 131.96054999994 0.68 46.30410696748
15 54228 1.6554933307161 5 HIP Pyramidal Cell Deep 3.7987755403113 147.61085309287 0.71 33.864969368298
16 5591 0.94202541242866 5 HIP Pyramidal Cell Deep 4.1137542478984 209.91008638638 0.69 31.023428400339
17 35529 1.0850153237839 5 HIP Pyramidal Cell Deep 8.781558726674 200.753135639 0.72 33.740410261338
18 97459 2.9752764703514 4 HIP Pyramidal Cell Deep 0.33860392575339 170.82044627718 0.75 65.054105030921
19 4476 0.13670333962304 4 HIP Pyramidal Cell Deep 1.1170688114388 166.34112417918 0.76 36.59924111333
20 35628 1.0882182738855 4 HIP Pyramidal Cell Deep 5.0802739418435 131.29132064165 0.76 32.943096164632
21 6582 0.20353057802107 4 HIP Pyramidal Cell Superficial 1.2154360376785 110.76062646324 0.95 36.635921293085
22 13757 0.42006595878311 4 HIP Pyramidal Cell Deep 0.79959293450607 87.332773360359 0.69 35.598134506927
23 50073 1.5286301967794 4 HIP Pyramidal Cell Deep 10.045333812634 71.022915825495 0.79 37.016836195152
24 79021 2.4125838831703 4 HIP Pyramidal Cell Deep 12.528315257969 93.767717066292 0.76 33.700195279576
25 9679 0.30131029899786 4 HIP Pyramidal Cell Superficial 4.7525570823432 130.15256732595 0.79 40.272193928385
26 41395 1.2639912371743 4 HIP Pyramidal Cell Deep 0.60393767363208 157.3397459153 0.76 34.012052745185
27 74904 2.2866002303534 4 HIP Pyramidal Cell Deep 4.272134999466 76.124205829329 0.57 41.569995527069
28 78269 2.4018373643097 4 HIP Pyramidal Cell Deep 4.7528395661117 188.34153434649 0.78 76.79940849814
29 82246 2.5108060579474 4 HIP Pyramidal Cell Deep 2.0426525302142 318.82800516464 0.65 58.732210184223
30 14877 0.45422049358508 4 HIP Pyramidal Cell Deep 2.5542784163474 205.74498934103 0.77 37.610979837758
31 116130 3.5451010847812 4 HIP Pyramidal Cell Deep 9.2568673038836 84.65622862247 0.75 42.724637341283
32 71666 2.187808779169 4 HIP Pyramidal Cell Deep 8.1349593949711 128.87369204335 0.71 35.113809515395
33 23062 0.70404387958517 4 HIP Pyramidal Cell Deep 9.8430318272483 138.72835774171 0.71 27.737644251169
34 134210 4.0970391647959 4 HIP Narrow Interneuron Deep 2.1607927874227 110.24842373171 0.32 98.992085270042
35 42261 1.2902885587887 4 HIP Pyramidal Cell Deep 2.2952604055749 101.93344557722 0.7 38.892168368714
36 31667 0.96690783506392 4 HIP Pyramidal Cell Deep 0.063157229923896 325.02792480982 0.75 97.48314386672
37 1809 0.059583668454414 4 HIP Pyramidal Cell Superficial 0.55279159756772 203.01691814028 0.72 47.832355632223
38 7472 0.22949460519596 4 HIP Pyramidal Cell Deep 0.26766595289079 424.24073569478 0.63 82.040457406249
39 20132 0.61459314295695 4 HIP Pyramidal Cell Deep 2.086230876217 99.453150636283 0.66 24.79522492228
40 62114 1.896185214905 4 HIP Pyramidal Cell Deep 2.3505167917056 172.91407694971 0.65 47.519468519336
41 66957 2.0440432789752 4 HIP Pyramidal Cell Deep 4.9882760577684 83.677346361469 0.66 35.626517656638
42 83561 2.5508723168404 3 HIP Pyramidal Cell Deep 4.8467586553536 111.99813810896 0.75 28.278532566779
43 52479 1.6020736992367 3 HIP Pyramidal Cell Deep 1.1052039863564 94.932929310958 0.71 32.439365064699
44 9076 0.27710780713143 3 HIP Pyramidal Cell Deep 0.110180696342 172.48119698865 0.78 34.497629295347
45 9621 0.29537901951407 3 HIP Pyramidal Cell Deep 0.51969649724561 226.16083380872 0.74 38.159173649152
46 86885 2.6523987831642 3 HIP Pyramidal Cell Deep 8.0566265753582 74.311547642797 0.77 27.598419504386
47 4960 0.15166039798847 3 HIP Pyramidal Cell Deep 0.20161290322581 204.18863487112 0.75 36.553674779626
48 39905 1.2182164173264 3 HIP Pyramidal Cell Deep 5.8138077935096 105.46157922009 0.76 32.112777778282
49 52805 1.627998275182 3 HIP Pyramidal Cell Deep 0.43556481393807 270.18448085466 0.73 65.554712028691
50 5212 0.16051111049084 3 HIP Pyramidal Cell Deep 0 576.54174555734 0.6 56.30511912133
51 365424 11.155333459198 3 HIP Narrow Interneuron Deep 3.2783834668768 147.51286177494 0.28 64.044650010131
52 82877 2.5300400934288 3 HIP Pyramidal Cell Superficial 14.382759993726 76.434317899864 0.72 37.679484201093
53 29981 0.91655000099876 3 HIP Wide Interneuron Deep 0.46696240952603 151.59279750174 0.75 36.673285118147
54 6318 0.19317757055038 3 HIP Pyramidal Cell Deep 0.94966761633428 222.28726445463 0.75 36.140767925625
55 5495 0.167767859634 3 HIP Pyramidal Cell Deep 0 489.80533146017 0.69 70.750491950156
56 48278 1.4740853434866 3 HIP Pyramidal Cell Deep 1.3256555781101 199.8215452531 0.68 42.994297683296
57 57840 1.7659536232001 3 HIP Pyramidal Cell Deep 3.0255878284924 290.97798358467 0.67 45.371173877459
58 5387 0.16558867272656 3 HIP Pyramidal Cell Deep 2.9701132355671 300.39718284984 0.79 34.037883467673
59 62205 1.8989717334417 3 HIP Pyramidal Cell Deep 6.8161723334137 87.546399960213 0.73 25.159839463347
60 16903 0.51607509341729 3 HIP Pyramidal Cell Deep 0.17748328699048 339.31419934579 0.8 78.833441535431
61 42080 1.2912537289228 3 HIP Pyramidal Cell Deep 0.023764258555133 451.93271254298 0.51 89.497085087132
62 28863 0.88124169339139 3 HIP Pyramidal Cell Deep 5.4741364376537 159.22097410253 0.73 29.44341741409
63 116464 3.5553223004496 3 HIP Wide Interneuron Deep 4.705316664377 61.54381151674 0.45 50.30960001145
64 406331 12.404247783644 3 HIP Narrow Interneuron Deep 3.0467771348974 120.05938795223 0.3 75.567912730632
65 466245 14.233416608897 3 HIP Narrow Interneuron Deep 7.4896245536145 130.67692711597 0.21 69.442670060981
66 12032 0.36882748282552 3 HIP Pyramidal Cell Deep 0.99734042553191 341.33486248769 0.76 41.103401883105
67 38862 1.1863840532069 3 HIP Pyramidal Cell Deep 0.10292831043178 411.29348326809 0.7 111.27928221008
68 5491 0.16847398016101 3 HIP Pyramidal Cell Deep 0.3642323802586 333.43766731926 0.78 43.712767085084
69 39844 1.2163757018079 2 HIP Pyramidal Cell Deep 3.2376267443028 93.120648946155 0.67 28.71944853984
70 19114 0.58434441377142 2 HIP Pyramidal Cell Deep 0.31390603745945 111.67105706929 0.75 57.76537464886
71 85776 2.6188176298524 2 HIP Narrow Interneuron Deep 4.7682335385189 81.695213526902 0.27 64.387934423033
72 82675 2.5239107496863 2 HIP Wide Interneuron Deep 5.9389174478379 139.67734328039 0.72 31.249688083515
73 54530 1.6646976826201 2 HIP Pyramidal Cell Deep 5.0797726022373 110.49506966312 0.78 34.359341975178
74 10859 0.33157895981543 2 HIP Pyramidal Cell Deep 1.7497007090892 421.69372061361 0.74 32.544121047504
75 566672 17.2988059986 2 HIP Narrow Interneuron Deep 38.037877290567 263.70641833421 0.22 89.896178120584
76 7473 0.22924015827988 2 HIP Pyramidal Cell Deep 4.6835273651813 207.38345759442 0.78 30.451542960125
77 73911 2.2583400736331 2 HIP Pyramidal Cell Deep 0.67648929117452 174.8535917929 0.71 43.632599776944
78 38386 1.1718886838185 2 HIP Wide Interneuron Deep 0.15630698692232 88.997883525705 0.57 60.760539603649
79 23782 0.7260068939761 2 HIP Pyramidal Cell Deep 1.8921873685981 187.01338752616 0.76 29.58334435953
80 70643 2.1565650504915 2 HIP Pyramidal Cell Deep 21.6157297963 381.95418090819 0.71 78.970567150678
81 27012 0.82461618897053 2 HIP Pyramidal Cell Deep 6.1083962683252 148.66691384101 0.71 23.741194855161
82 68118 2.0794431380833 2 HIP Wide Interneuron Deep 0.44041222584339 125.39480253054 0.41 67.153525345677
83 403721 12.324407920236 2 HIP Narrow Interneuron Deep 1.0626150237416 189.43065420531 0.26 78.89582010403
84 42600 1.300483379598 2 HIP Pyramidal Cell Deep 0.98591549295775 156.66775495312 0.7 36.936562491611
85 66052 2.0169303919494 2 HIP Pyramidal Cell Deep 13.413674074971 154.39541053879 0.74 34.982362574475
86 220742 6.7387344802141 2 HIP Pyramidal Cell Deep 9.1871959119696 80.649539104612 0.69 47.639475475176
87 37428 1.1427457975896 2 HIP Pyramidal Cell Deep 1.656513839906 316.65684737021 0.75 30.853180426105
88 128341 3.9179443354046 2 HIP Pyramidal Cell Deep 12.357703306036 81.644466346155 0.74 40.859008125864
89 59615 1.8200785450523 1 HIP Pyramidal Cell Deep 2.9690514132349 112.56033122833 0.76 46.262087380756
90 56712 1.7321124510176 1 HIP Pyramidal Cell Deep 3.2268303004655 379.65976847135 0.72 27.011572487901
91 81300 2.4818568328461 1 HIP Narrow Interneuron Deep 7.8228782287823 88.713388179617 0.23 53.769313110013
92 60143 1.8359890747553 1 HIP Pyramidal Cell Deep 6.4679181284605 81.5803105475 0.73 41.675464781227
93 60291 1.8406055049006 1 HIP Pyramidal Cell Deep 4.8265910334876 105.63717947891 0.72 37.898731146606
94 41683 1.2726117450612 1 HIP Pyramidal Cell Deep 4.9660533071036 167.21406107112 0.76 34.330643765107
95 197861 6.0401216671439 1 HIP Narrow Interneuron Deep 1.4757835045815 191.18427768372 0.43 69.860451395513
96 33772 1.0310723854397 1 HIP Pyramidal Cell Deep 6.0997275849816 244.60718268284 0.76 30.756463190429
97 54586 1.6663878541664 1 HIP Pyramidal Cell Deep 2.5647601949218 189.76442976552 0.76 35.03004643715
98 53959 1.6472699679029 1 HIP Pyramidal Cell Deep 2.9466817398395 122.43234014408 0.74 34.980930398735
99 28378 0.86662993460361 1 HIP Pyramidal Cell Deep 1.9733596447953 117.78403845928 0.76 46.765662123227
100 542485 16.560442355841 1 HIP Narrow Interneuron Deep 8.7799662663484 213.56671566293 0.23 135.27504853048
101 41201 1.2614114765185 1 HIP Pyramidal Cell Deep 1.3591903109148 135.46559470914 0.72 46.499125099131