Details for Peter_MS13_171128_113924_concat

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  • Date & time: 2017-11-28, 11:39:24

  • Location: Alexandria

  • Animal subject: MS13

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-16 12:30:45 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:44:19 by Peter Petersen

  • Notes:
    recordingID = 91

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS13_171128_113924 Homecage_Sleep Homecage Homecage_Rat 13532.328
Peter_MS13_171128_162459 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 16190.676
Peter_MS13_171128_171719 Homecage_Sleep Homecage Homecage_Rat 18918.576

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 378372000 128 8 0.195

Implanted probes

MS13 : #1 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS13 : #2 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 43, 41, 58, 52, 56, 50, 44, 39, 55, 54, 40, 51, 53, 42, 49, 38
2 46, 37, 34, 60, 48, 45, 18, 35, 64, 62, 33, 47, 61, 36, 57, 59
3 20, 27, 32, 6, 63, 19, 1, 29, 2, 4, 31, 17, 3, 30, 7, 5
4 21, 23, 8, 14, 10, 16, 22, 25, 9, 12, 26, 13, 11, 24, 15, 28
5 107, 105, 122, 116, 120, 114, 108, 103, 119, 118, 104, 115, 117, 106, 113, 102
6 110, 101, 98, 124, 112, 109, 82, 99, 128, 126, 97, 111, 125, 100, 121, 123
7 84, 91, 96, 70, 127, 83, 65, 93, 66, 68, 95, 81, 67, 94, 71, 69
8 85, 87, 72, 78, 74, 80, 86, 89, 73, 76, 90, 77, 75, 88, 79, 92
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2017-11-28 04.25.43 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171128_113928559.avi 1 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171128_162504036.avi 2 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171128_171722412.avi 3 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 21 4
Ripple 22 4
Bad 26, 78, 82, 83, 86, 88, 90, 92, 96
GammaPhaseCoupling 79 8

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-07-08_231559 Peter Petersen Yes 63 34698

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 21906 1.1592721958336 7 CA1 Pyramidal Cell Unknown 3.0585227791473 614.24929086099 0.73
2 11625 0.61526340696673 7 CA1 Pyramidal Cell Unknown 6.3655913978495 495.84680425491 0.72
3 8959 0.47540722636655 4 CA1 Pyramidal Cell Unknown 1.6742940060275 84.975627703066 0.74
4 9922 0.54571326350174 8 CA1 Pyramidal Cell Unknown 0.60471679096956 183.77788626074 0.72
5 33445 1.7681917389585 7 CA1 Pyramidal Cell Unknown 5.2324712214083 136.98363022238 0.7
6 14708 0.77750882851548 7 CA1 Pyramidal Cell Unknown 2.8555887952135 250.33966254168 0.68
7 18918 1.000071339268 8 CA1 Pyramidal Cell Unknown 3.7530394333439 164.26247963208 0.68
8 19322 1.021486585997 7 CA1 Wide Interneuron Unknown 0 302.26229946258 0.7
9 45203 2.3893616041314 4 CA1 Pyramidal Cell Unknown 2.7653031878415 67.659395512059 0.71
10 5360 0.29280512207059 8 CA1 Pyramidal Cell Unknown 2.0522388059701 243.33919725735 0.71
11 14323 0.75713057639746 8 CA1 Pyramidal Cell Unknown 0.9076310828737 248.23475808575 0.7
12 4029 0.28317321799574 8 CA1 Pyramidal Cell Unknown 4.964010920824 378.17109564986 0.72
13 3443 0.18324017063508 8 CA1 Pyramidal Cell Unknown 2.0331106593087 432.27321125739 0.74
14 3719 0.23510943497071 4 CA1 Pyramidal Cell Unknown 2.6888948642108 152.72922615565 0.63
15 101119 5.3451663122763 7 CA1 Pyramidal Cell Unknown 0.37579485556621 175.39820391261 0.72
16 24900 1.4106293042517 7 CA1 Pyramidal Cell Unknown 0.56224899598394 265.93172090183 0.66
17 2902 0.15440369048657 4 CA1 Wide Interneuron Unknown 0.68917987594762 206.13774087815 0.74
18 10882 0.57617612839081 3 CA1 Pyramidal Cell Unknown 4.1352692519757 197.12559290888 0.7
19 18844 0.99689109534541 3 CA1 Pyramidal Cell Unknown 6.3150074294205 318.82838157337 0.72
20 55885 2.9539894146378 3 CA1 Wide Interneuron Unknown 0.12525722465778 114.50989173714 0.66
21 26340 1.5972311167836 2 CA1 Pyramidal Cell Unknown 2.6575550493546 124.36616854537 0.68
22 11442 0.61902380081863 2 CA1 Pyramidal Cell Unknown 3.0589057857018 171.2844264226 0.72
23 8390 0.44362258352394 2 CA1 Pyramidal Cell Unknown 3.4564958283671 205.27276030764 0.68
24 316369 16.722806985068 3 CA1 Narrow Interneuron Unknown 3.1513833529834 135.25458463991 0.37
25 8121 0.47554331277303 8 CA1 Pyramidal Cell Unknown 2.5858884373846 282.75697845433 0.72
26 6117 0.32387735785807 3 CA1 Pyramidal Cell Unknown 3.4330554193232 309.59903899453 0.68
27 16160 0.85488426153922 2 CA1 Pyramidal Cell Unknown 4.2079207920792 101.47876281613 0.68
28 81585 5.0051318935995 2 CA1 Narrow Interneuron Unknown 4.9396335110621 87.602496199729 0.27
29 290809 15.430745371079 2 CA1 Narrow Interneuron Unknown 1.5474074048602 113.85655515203 0.29
30 4160 0.30787768900124 2 CA1 Pyramidal Cell Unknown 1.4423076923077 298.22644056602 0.66
31 4901 0.2672815797263 3 CA1 Wide Interneuron Unknown 1.2242399510304 142.88396458577 0.62
32 4458 0.30389247921432 7 CA1 Pyramidal Cell Unknown 0.89726334679228 207.17463714632 0.71
33 7635 0.40434522887604 3 CA1 Pyramidal Cell Unknown 0.13097576948265 151.88115981004 0.58
34 7172 0.38090410558303 3 CA1 Pyramidal Cell Unknown 1.3943112102621 120.34983328306 0.71
35 2241 0.12056402043768 8 CA1 Pyramidal Cell Unknown 0 262.96569257551 0.68
36 10823 0.57217492509818 3 CA1 Pyramidal Cell Unknown 0.55437494225261 127.80265631009 0.69
37 794 0.043608598450155 3 CA1 Pyramidal Cell Unknown 3.7783375314861 328.41028721445 0.66
38 2847 0.15111807991756 3 CA1 Pyramidal Cell Unknown 0.70249385317878 115.28755076142 0.7
39 1744 0.095324225923422 4 CA1 Pyramidal Cell Unknown 1.7201834862385 164.13273070781 0.65
40 3119 0.16591628601495 2 CA1 Pyramidal Cell Unknown 2.8855402372555 150.36472455463 0.74
41 704 0.15409900620369 8 CA1 Pyramidal Cell Unknown 0 556.26094168256 0.76
42 4593 0.24341072320159 3 CA1 Pyramidal Cell Unknown 2.394948835184 136.32436414062 0.72
43 1348 0.078384006936589 8 CA1 Wide Interneuron Unknown 0.74183976261128 210.56190989454 0.7
44 1537 0.11124820463891 8 CA1 Pyramidal Cell Unknown 1.9518542615485 461.69819964757 0.71
45 3457 0.18362690660682 7 CA1 Pyramidal Cell Unknown 5.4960948799537 450.68729608717 0.73
46 387035 20.458329699049 8 CA1 Narrow Interneuron Unknown 2.1806813337295 143.31225871454 0.26
47 9886 0.5227091025103 3 CA1 Pyramidal Cell Unknown 1.8207566255311 87.375794957626 0.67
48 401257 21.209799439327 7 CA1 Narrow Interneuron Unknown 10.960556451352 155.47092402026 0.28
49 14628 0.77344090027336 3 CA1 Wide Interneuron Unknown 1.367240907848 83.241223935072 0.66
50 59896 3.1684591424427 7 CA1 Pyramidal Cell Unknown 0.16695605716575 367.22993662116 0.65
51 16937 0.89590532756765 4 CA1 Pyramidal Cell Unknown 1.4760583338254 58.179997932077 0.68
52 17893 0.94581474727801 3 CA1 Wide Interneuron Unknown 1.6207455429498 57.818851375008 0.67
53 17615 0.9316575478822 2 CA1 Pyramidal Cell Unknown 5.6202100482543 69.545337446743 0.71
54 12455 0.65887864176985 8 CA1 Pyramidal Cell Unknown 3.3721397029305 107.49980822777 0.7
55 13401 0.70861253657407 4 CA1 Pyramidal Cell Unknown 0.3731064845907 119.69664826211 0.67
56 7478 0.39554979504062 8 CA1 Pyramidal Cell Unknown 1.7384327360257 153.88901418791 0.71
57 15865 1.0073963241311 2 CA1 Pyramidal Cell Unknown 6.366214938544 136.66552160951 0.7
58 15075 0.79727471352888 2 CA1 Pyramidal Cell Unknown 2.5870646766169 81.702489341971 0.72
59 18352 0.97058856187348 7 CA1 Pyramidal Cell Unknown 5.0675675675676 217.52085657174 0.69
60 24657 1.303496847172 8 CA1 Wide Interneuron Unknown 2.4739424909762 112.9746294959 0.67
61 20581 1.0881943389779 7 CA1 Pyramidal Cell Unknown 2.2836596861183 118.02702735918 0.65
62 34162 1.8603768090248 8 CA1 Narrow Interneuron Unknown 1.9026989052163 125.30773845603 0.3
63 43836 2.3175829194118 4 CA1 Wide Interneuron Unknown 1.2774888219728 48.901266410682 0.41