Details for Peter_MS13_171201_130527_concat

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  • Date & time: 2017-12-01, 13:05:27

  • Location: Alexandria

  • Animal subject: MS13

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-16 12:36:58 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:44:45 by Peter Petersen

  • Notes:
    recordingID = 94

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS13_171201_130527 Homecage_Sleep Homecage Homecage_Rat 12273.84
Peter_MS13_171201_164033 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 13978.656
Peter_MS13_171201_171147 Homecage_Sleep Homecage Homecage_Rat 21834.9

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 436698000 128 8 0.195

Implanted probes

MS13 : #1 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS13 : #2 Silicon probe Cambridge Neurotech P1-64ch (64 ch, 4 shanks, poly 2 ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 43, 41, 58, 52, 56, 50, 44, 39, 55, 54, 40, 51, 53, 42, 49, 38
2 46, 37, 34, 60, 48, 45, 18, 35, 64, 62, 33, 47, 61, 36, 57, 59
3 20, 27, 32, 6, 63, 19, 1, 29, 2, 4, 31, 17, 3, 30, 7, 5
4 21, 23, 8, 14, 10, 16, 22, 25, 9, 12, 26, 13, 11, 24, 15, 28
5 107, 105, 122, 116, 120, 114, 108, 103, 119, 118, 104, 115, 117, 106, 113, 102
6 110, 101, 98, 124, 112, 109, 82, 99, 128, 126, 97, 111, 125, 100, 121, 123
7 84, 91, 96, 70, 127, 83, 65, 93, 66, 68, 95, 81, 67, 94, 71, 69
8 85, 87, 72, 78, 74, 80, 86, 89, 73, 76, 90, 77, 75, 88, 79, 92
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2017-12-01 04.40.37 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171201_130533543.avi 1 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171201_164122139.avi 2 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20171201_171152154.avi 3 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 21 4
Ripple 21 4
Bad 26, 78, 82, 83, 86, 88, 90, 92, 96
GammaPhaseCoupling 28 4

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-07-25_201514 Peter Petersen Yes 54 34733

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 22273 1.0203164529826 7 CA1 Pyramidal Cell Unknown 3.8162798006555 200.79340315246 0.71
2 23118 1.0588806070549 7 CA1 Wide Interneuron Unknown 0.086512674106757 208.41987952989 0.65
3 28516 1.3071162496277 8 CA1 Pyramidal Cell Unknown 7.4344227801936 228.36675689936 0.73
4 2177 0.10059699743285 7 CA1 Pyramidal Cell Unknown 0 631.9627883827 0.72
5 13670 0.62672650802966 7 CA1 Pyramidal Cell Unknown 6.0716898317484 254.67052186738 0.72
6 20275 0.92902529678607 7 CA1 Wide Interneuron Unknown 0.44389642416769 490.16406540022 0.67
7 93901 4.3006937474132 7 CA1 Pyramidal Cell Unknown 3.7592783889415 164.60223904276 0.69
8 56622 2.5935786296596 7 CA1 Pyramidal Cell Unknown 5.262971989686 172.34392430771 0.7
9 7003 0.32151518117509 7 CA1 Pyramidal Cell Unknown 4.8550621162359 263.52152336726 0.68
10 10706 0.49119445843093 7 CA1 Pyramidal Cell Unknown 2.5219503082384 332.98523228394 0.74
11 18496 0.84817208391722 2 CA1 Pyramidal Cell Unknown 1.8382352941176 75.866542269023 0.69
12 18017 0.82570965550348 2 CA1 Pyramidal Cell Unknown 3.1636787478493 109.30433832337 0.6
13 15605 0.71532366047514 3 CA1 Pyramidal Cell Unknown 3.7167574495354 97.189337683396 0.68
14 10853 0.87585138678272 6 CA1 Pyramidal Cell Unknown 3.4091956141159 533.08925072654 0.72
15 130656 5.9839036125469 2 CA1 Narrow Interneuron Unknown 2.8701322556943 93.088626690372 0.32
16 32154 1.4727904337731 2 CA1 Pyramidal Cell Unknown 3.5143372519749 93.847388554358 0.7
17 112839 9.7840150434119 6 CA1 Narrow Interneuron Unknown 2.0560267283475 257.62265920887 0.28
18 55668 2.5502797504744 2 CA1 Wide Interneuron Unknown 2.9819645038442 132.48424703614 0.63
19 37576 1.7220217854683 2 CA1 Pyramidal Cell Unknown 5.8281882052374 125.08544805105 0.71
20 41184 1.8866811277251 2 CA1 Pyramidal Cell Unknown 3.1808469308469 184.68098312918 0.69
21 12653 0.58008311069364 2 CA1 Pyramidal Cell Unknown 1.5016201691299 112.51562487548 0.68
22 13077 0.60408687847495 8 CA1 Pyramidal Cell Unknown 2.2176340139176 159.09692097288 0.71
23 16316 0.76732694948445 8 CA1 Pyramidal Cell Unknown 1.7161068889434 239.58788503061 0.73
24 6245 0.28620935620906 3 CA1 Pyramidal Cell Unknown 0.80064051240993 82.751428623989 0.55
25 4940 0.22683552673683 7 CA1 Pyramidal Cell Unknown 0 198.82956149578 0.59
26 3118 0.2709449411638 6 CA1 Pyramidal Cell Unknown 2.8864656831302 237.27778470031 0.74
27 3738 0.17134764787536 2 CA1 Pyramidal Cell Unknown 0.26752273943285 76.963452592712 0.62
28 2696 0.12368996595271 8 CA1 Wide Interneuron Unknown 0.37091988130564 264.70803829238 0.67
29 2676 0.1251170216441 8 CA1 Pyramidal Cell Unknown 2.9895366218236 153.95440959531 0.28
30 3096 0.14747760035681 8 CA1 Pyramidal Cell Unknown 1.2919896640827 278.766373083 0.71
31 3270 0.34999311064784 7 CA1 Wide Interneuron Unknown 0.61162079510703 138.63878724954 0.71
32 3510 0.16255476552833 3 CA1 Pyramidal Cell Unknown 1.7094017094017 144.44769605177 0.63
33 16645 0.76235945262848 2 CA1 Pyramidal Cell Unknown 2.0426554520877 94.066764900145 0.64
34 11993 0.5499059970477 8 CA1 Pyramidal Cell Unknown 2.0845493204369 88.223571707661 0.59
35 6398 0.3086079971238 3 CA1 Wide Interneuron Unknown 4.0637699281025 285.20590068423 0.7
36 7825 0.35883170157617 3 CA1 Pyramidal Cell Unknown 0.2555910543131 66.049282685903 0.61
37 9028 0.41398104507447 7 CA1 Pyramidal Cell Unknown 4.0983606557377 132.52760896453 0.62
38 25571 1.1711686125236 3 CA1 Pyramidal Cell Unknown 3.5978256618826 112.30423712406 0.71
39 16399 0.75193278110682 8 CA1 Pyramidal Cell Unknown 2.6221111043356 82.981212482372 0.71
40 18048 0.82727257886387 3 CA1 Pyramidal Cell Unknown 0.5540780141844 98.666062332516 0.61
41 20999 0.96214942247427 3 CA1 Pyramidal Cell Unknown 2.1905805038335 93.391793813845 0.68
42 2186 0.10067841616483 7 CA1 Pyramidal Cell Unknown 0.91491308325709 199.42541059257 0.63
43 1075 0.050417866797544 7 CA1 Wide Interneuron Unknown 1.8604651162791 186.0722037195 0.67
44 1213 0.05771318905902 7 CA1 Wide Interneuron Unknown 0.82440230832646 172.53388376423 0.76
45 21247 0.9733308113558 7 CA1 Pyramidal Cell Unknown 2.4474043394362 93.716563522939 0.71
46 37020 1.6959754155215 4 CA1 Wide Interneuron Unknown 5.1323608860076 85.013935773053 0.48
47 40703 1.8641622355621 7 CA1 Narrow Interneuron Unknown 0.90902390487188 67.752184368667 0.26
48 39202 1.7954854336607 7 CA1 Narrow Interneuron Unknown 0.73975817560329 98.577543403795 0.31
49 66674 3.0555728240083 7 CA1 Wide Interneuron Unknown 0.25497195308516 78.591647218532 0.58
50 51856 2.3750110421228 2 CA1 Narrow Interneuron Unknown 0.11570502931194 65.154268944869 0.52
51 44861 2.0551511288076 8 CA1 Wide Interneuron Unknown 14.868148280243 128.50227835431 0.75
52 92216 7.3126997350899 6 CA1 Narrow Interneuron Unknown 6.9293831872994 259.27746059328 0.26
53 90026 4.123123211744 3 CA1 Wide Interneuron Unknown 1.3773798680381 73.867945710705 0.57
54 248232 19.476056177397 6 CA1 Narrow Interneuron Unknown 11.698733442908 174.46969294266 0.38