Details for Peter_MS21_180628_155921_concat

Back to list of sessions

  • Date & time: 2018-06-26, 21:10:24

  • Animal subject: MS21

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-17 11:02:26 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:47:07 by Peter Petersen

  • Notes:
    recordingID = 151
    First epoch has been removed

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS21_180628_120538 Wheelbox_FreeRunning Running wheel Wheel_Box Thermal perturbation 9536.868
Peter_MS21_180628_155921 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 11296.26
Peter_MS21_180628_163508 Homecage_Sleep Homecage Homecage_Rat 13575.96
Peter_MS21_180628_173009 14403.492
Peter_MS21_180628_174546 15008.22

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 109427000 128 14 0.195

Implanted probes

MS21 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS21 : #2 Silicon probe NeuroNexus Buzsaki64 (64 ch, 8 shanks, staggered) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 20, 19, 18
8 114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9 124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10 102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11 104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12 91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13 71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14 81, 84, 83, 82
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
aux 4 Temperature MS temperature probe
adc 1 WheelPosition Running wheel
dig 1 OptitrackSync TTL sync
dig 2 BaslerSync TTL sync
dig 5 ArduinoRemoteCh1 Remote Button A
dig 6 ArduinoRemoteCh2 Remote Button B
dig 7 ArduinoRemoteCh3 Remote Button C
dig 8 ArduinoRemoteCh4 Remote Button D
aux 1 AccelerometerX Head mounted accelerometer
aux 2 AccelerometerY Head mounted accelerometer
aux 3 AccelerometerZ Head mounted accelerometer
adc ch_opto_on
adc ch_opto_off

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-06-28 03.59.22 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180628_155926844.avi 2 Video 10
OptiTrack, Flex 13 Take 2018-06-28 05.30.15 PM.csv 4 Head position 120
OptiTrack, Flex 13 Take 2018-06-28 05.39.43 PM.csv 4 Head position 120
OptiTrack, Flex 13 Take 2018-06-28 05.45.50 PM.csv 5 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180628_173012566.avi 4 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180628_174548975.avi 5 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 64
GammaPhaseCoupling 63
Cortical
Ripple 71
Bad 26, 30, 36

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
cooling_onsets
cooling_offsets
time_frame

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-07-31_162404 Peter Petersen Yes 98 34909

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 53288 9.7399332896455 1 CA1 Wide Interneuron Deep 0.037531902116799 174.849143119 0.6
2 29416 5.3783694126339 2 CA1 Pyramidal Cell Deep 8.7027468044602 92.179174032796 0.65
3 15656 2.863482930045 1 CA1 Pyramidal Cell Deep 6.2595809913132 182.18753345976 0.7
4 27191 4.9700184927605 6 CA1 Pyramidal Cell Deep 13.129344268324 240.40788290367 0.69
5 13291 2.4309473813108 13 CA1 Pyramidal Cell Superficial 6.3953050936724 105.6810983618 0.66
6 10982 2.0077411749953 13 CA1 Pyramidal Cell Deep 4.9171371334912 142.0212312599 0.73
7 17724 3.2413092168028 5 CA1 Pyramidal Cell Deep 7.3346874294742 182.47305277633 0.71
8 8874 1.6278631618666 13 CA1 Pyramidal Cell Deep 4.9583051611449 317.98503982826 0.55
9 11325 2.0710300206088 13 CA1 Pyramidal Cell Deep 7.8587196467991 129.57656675256 0.7
10 10671 1.9533745547657 2 CA1 Pyramidal Cell Deep 7.8718020804048 195.32539316274 0.68
11 13890 2.5405523784577 3 CA1 Pyramidal Cell Superficial 4.3196544276458 116.90561780726 0.66
12 20086 3.6734409397074 13 CA1 Pyramidal Cell Superficial 6.4223837498755 158.6674454931 0.6
13 14759 2.6978884695027 13 CA1 Wide Interneuron Superficial 6.2334846534318 138.13625382067 0.64
14 20267 3.7044840561415 5 CA1 Pyramidal Cell Deep 5.4275423101594 248.04035512561 0.73
15 2029 0.37382382753445 1 CA1 Pyramidal Cell Deep 2.4642681123706 415.9188009313 0.7
16 4922 0.90453635087542 2 CA1 Pyramidal Cell Deep 1.6253555465258 455.22754939034 0.71
17 3245 0.59516642329648 3 CA1 Pyramidal Cell Deep 4.0061633281972 247.81685937665 0.73
18 10748 1.9726584545979 4 CA1 Pyramidal Cell Superficial 2.2329735764793 186.26592096974 0.62
19 14761 2.6997829309411 1 CA1 Pyramidal Cell Deep 6.8423548540072 93.835700008175 0.64
20 56084 10.251102195916 2 CA1 Narrow Interneuron Deep 0.30311675344127 131.40084196827 0.24
21 7664 1.4015385561401 2 CA1 Pyramidal Cell Deep 1.8267223382046 114.8012591797 0.69
22 21639 3.9565420688994 1 CA1 Pyramidal Cell Deep 7.4402698830815 185.76295297771 0.73
23 8141 1.4883629161536 1 CA1 Pyramidal Cell Superficial 3.0708758137821 54.150319842542 0.55
24 20429 3.7360409269943 4 CA1 Pyramidal Cell Deep 7.0488031719614 142.62444363289 0.72
25 14183 2.5943483393633 1 CA1 Pyramidal Cell Deep 1.9741944581541 374.94779641965 0.73
26 3186 0.58437169436674 5 CA1 Pyramidal Cell Deep 0 481.03561257573 0.71
27 9971 1.8240704286197 12 CA1 Pyramidal Cell Deep 1.8052351820279 200.23491416854 0.74
28 21157 3.8707912075061 13 CA1 Pyramidal Cell Deep 4.5847709977785 246.06994529836 0.69
29 13338 2.4423525689198 10 CA1 Pyramidal Cell Deep 9.5966411755885 256.78900220747 0.72
30 4973 0.90917896331367 10 CA1 Pyramidal Cell Deep 4.0217172732757 113.82362067627 0.72
31 22477 4.1084840112579 4 CA1 Narrow Interneuron Deep 1.2902077679406 98.694258186019 0.42
32 50114 9.2955587108139 4 CA1 Narrow Interneuron Deep 1.9156323582233 145.82908582613 0.21
33 3097 0.57354194345845 3 CA1 Pyramidal Cell Deep 0 279.41933033151 0.7
34 234068 42.780979717663 3 CA1 Narrow Interneuron Deep 0.88435839157852 1213.6650691338 0.21
35 7386 1.3511437470234 3 CA1 Pyramidal Cell Deep 1.7600866504197 189.20608152366 0.72
36 1035 0.1899939493811 2 CA1 Pyramidal Cell Deep 1.9323671497585 357.78245229124 0.72
37 5896 1.0805482961562 2 CA1 Pyramidal Cell Deep 2.2048846675712 321.79095398394 0.68
38 84620 15.466216456352 2 CA1 Narrow Interneuron Deep 3.1434649019144 167.6328136279 0.29
39 1075 0.19806104683646 1 CA1 Pyramidal Cell Deep 0 674.1645452083 0.7
40 7815 1.4316183248025 4 CA1 Pyramidal Cell Deep 2.9430582213692 93.218327881116 0.74
41 5219 0.95495408919612 3 CA1 Pyramidal Cell Deep 2.4908986395861 106.47455562846 0.67
42 7123 1.3036613685512 13 CA1 Pyramidal Cell Superficial 3.6501474097992 122.94042545821 0.66
43 3832 0.70374384840505 1 CA1 Pyramidal Cell Deep 0.26096033402923 398.00443514207 0.68
44 3385 0.61961898777267 1 CA1 Pyramidal Cell Deep 0 426.27936979892 0.73
45 4409 0.80891764461566 4 CA1 Pyramidal Cell Deep 2.4948968019959 106.90058855038 0.68
46 6908 1.2639099853115 3 CA1 Wide Interneuron Deep 1.4475969889983 113.64953771474 0.73
47 9353 1.7165773349336 4 CA1 Wide Interneuron Deep 3.5282796963541 107.67683085179 0.71
48 7685 1.4050296404578 5 CA1 Pyramidal Cell Deep 3.1229668184776 122.92084590749 0.72
49 14353 2.6248673713203 5 CA1 Pyramidal Cell Deep 6.1311224134327 99.742519200625 0.7
50 12084 2.2097124248725 13 CA1 Pyramidal Cell Superficial 3.9721946375372 130.05018730985 0.54
51 18693 3.4211406580395 12 CA1 Wide Interneuron Deep 0.10699192210988 93.858704063233 0.68
52 14179 2.5936577230444 2 CA1 Pyramidal Cell Deep 3.2442344312011 150.47060827252 0.72
53 17767 3.2478591449537 3 CA1 Wide Interneuron Superficial 0.11256824449823 86.729734995975 0.51
54 27896 5.1003265646074 9 CA1 Narrow Interneuron Superficial 2.1149985661027 59.690124811862 0.22
55 36814 6.7361115228091 2 CA1 Narrow Interneuron Deep 1.5754875862444 134.06298231302 0.29
56 139443 25.486323616324 11 CA1 Narrow Interneuron Superficial 16.336424202004 86.958458032227 0.21
57 14202 2.598848113001 10 CA1 Pyramidal Cell Deep 5.4217715814674 78.27310187302 0.69
58 9890 1.807755031463 10 CA1 Pyramidal Cell Deep 4.6511627906977 58.316008691983 0.68
59 14808 2.7064847698592 3 CA1 Pyramidal Cell Superficial 3.7142085359265 88.840426564317 0.53
60 200555 36.655774966971 6 CA1 Narrow Interneuron Deep 1.1767345615916 187.17815574418 0.21
61 4713 0.86152010314112 2 CA1 Wide Interneuron Superficial 0 124.44329127461 0.59
62 10921 1.996357237571 14 CA1 Wide Interneuron Deep 1.3735005951836 105.37427786531 0.67
63 11501 2.1022053067697 12 CA1 Pyramidal Cell Deep 2.086775063038 64.643048699901 0.74
64 136844 25.011302186424 11 CA1 Narrow Interneuron Superficial 5.955686767414 88.789225769462 0.22
65 1013 0.18915116668085 13 CA1 Pyramidal Cell Deep 0 381.73867295913 0.72
66 9689 1.7723904717247 2 CA1 Pyramidal Cell Deep 1.7545670347817 137.81053551036 0.66
67 9878 1.8163604762461 4 CA1 Narrow Interneuron Deep 3.6444624417898 86.891778294827 0.36
68 2744 0.50193598850947 13 CA1 Pyramidal Cell Superficial 0.36443148688047 164.21397866941 0.65
69 1617 0.29650248909439 2 CA1 Wide Interneuron Deep 1.8552875695733 189.38319375346 0.67
70 1474 0.30315788088117 4 CA1 Pyramidal Cell Deep 2.0352781546811 119.20197085673 0.7
71 3716 0.68055166660895 3 CA1 Pyramidal Cell Deep 2.6910656620022 156.70328415285 0.73
72 2604 0.47797283131942 13 CA1 Pyramidal Cell Superficial 3.0721966205837 289.65534080584 0.63
73 4075 0.74514556180835 13 CA1 Pyramidal Cell Deep 1.7177914110429 115.24253319027 0.71
74 2550 0.48027687453288 4 CA1 Pyramidal Cell Deep 1.1764705882353 140.94306255351 0.64
75 787 0.14682499849141 1 CA1 Narrow Interneuron Superficial 0 183.84628694572 0.17
76 114116 20.857122532981 6 CA1 Narrow Interneuron Deep 9.5867363034106 139.21800423277 0.28
77 10809 1.9795372003553 1 CA1 Pyramidal Cell Deep 8.418910167453 130.08763125083 0.66
78 5248 0.96248653701782 1 CA1 Pyramidal Cell Deep 1.5243902439024 149.25981947003 0.67
79 7490 1.3708898585174 13 CA1 Pyramidal Cell Superficial 1.3351134846462 105.12821684241 0.66
80 95107 17.383412972049 5 CA1 Narrow Interneuron Deep 0.32594866834197 249.82413258067 0.27
81 7461 1.3649114185112 10 CA1 Pyramidal Cell Deep 7.1036054148238 125.05589368742 0.73
82 2801 0.51333812723823 3 CA1 Pyramidal Cell Deep 0.71403070332024 221.62881159951 0.6
83 7719 1.4125160800884 10 CA1 Pyramidal Cell Deep 4.0160642570281 93.905642359923 0.66
84 1881 0.34548865651088 1 CA1 Pyramidal Cell Superficial 1.063264221159 168.85105909912 0.67
85 2612 0.47952980963924 12 CA1 Pyramidal Cell Superficial 1.531393568147 129.56388125671 0.59
86 3262 0.60681083024883 2 CA1 Pyramidal Cell Deep 0.91968117719191 268.25429485455 0.69
87 1102 0.2022500835681 2 CA1 Pyramidal Cell Deep 3.6297640653358 234.01135976198 0.7
88 10622 1.9415937808898 12 CA1 Pyramidal Cell Deep 2.3536057239691 78.524134701176 0.71
89 8177 1.4960902269932 13 CA1 Pyramidal Cell Superficial 1.5898251192369 117.48066254885 0.59
90 2587 0.53470386732581 4 CA1 Narrow Interneuron Deep 4.6385775028991 136.44496426496 0.21
91 7975 1.4585590765944 1 CA1 Pyramidal Cell Deep 2.3824451410658 129.94364739178 0.7
92 2832 0.51762523048671 3 CA1 Pyramidal Cell Deep 0.35310734463277 273.15863216458 0.74
93 10565 1.9315241153117 5 CA1 Pyramidal Cell Deep 4.7326076668244 139.18159815429 0.68
94 8161 1.4927768923478 4 CA1 Pyramidal Cell Superficial 4.7788261242495 121.15707972285 0.66
95 7732 1.4135882135995 1 CA1 Pyramidal Cell Deep 3.1039834454216 187.76541152334 0.68
96 5455 0.99773206630567 1 CA1 Pyramidal Cell Deep 2.1998166819432 295.5411820024 0.73
97 3554 0.65076604492844 5 CA1 Pyramidal Cell Deep 2.8137310073157 255.18525596347 0.71
98 2822 0.52179808736409 10 CA1 Pyramidal Cell Deep 0.70871722182849 116.30971857548 0.7