Details for Peter_MS21_180730_120605_concat

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  • Date & time: 2018-07-30, 12:06:05

  • Location: SB1323

  • Animal subject: MS21

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-17 15:44:57 by Peter Petersen ADMIN
    Updated: 2020-07-20 22:33:56 by Peter Petersen ADMIN

  • Notes:
    recordingID = 157
    Linear track 26 trials, poor performance
    Theta maze: 150 trials

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS21_180730_120605 LinearTrack_RunHalfwayInDarkness Linear track Linear_Track_Peter 1651.788
Peter_MS21_180730_124419 Homecage_Sleep Homecage Homecage_Rat 4435.884
Peter_MS21_180730_142516 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 1773.036
Peter_MS21_180730_151835 Homecage_Sleep Homecage Homecage_Rat 10323.936

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 363692880 128 0

Implanted probes

MS21 : #1 Silicon probe NeuroNexus Buzsaki64sp (64 ch, 6 shanks, staggered Non-uniform ) | Region: HIP | Coordinates: -3.3, -2.5, -1.6
MS21 : #2 Silicon probe NeuroNexus Buzsaki64 (64 ch, 8 shanks, staggered) | Region: HIP | Coordinates: -3.3, 2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) adc ch_opto_on
Intan Technologies, RHD2000 USB interface board (256ch) adc ch_opto_off

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-07-30 02.25.23 PM.csv 3 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180730_142519687.avi 3 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1:128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 64
BadChannels

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
cooling_onsets
cooling_offsets
time_frame

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Peter Petersen 0 35019

Spike sorted units

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