Details for Peter_MS12_170719_095305_concat

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  • Date & time: 2017-07-18, 10:17:20

  • Location: Alexandria

  • Animal subject: MS12

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-05-20 15:21:25 by Peter Petersen ADMIN
    Updated: 2022-04-12 15:42:49 by Peter Petersen

  • Notes:
    recordingID = 83

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS12_170719_095305 Homecage_Sleep Homecage Homecage_Rat 19111.32
Peter_MS12_170719_152620 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 19510.272
Peter_MS12_170719_153429 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 22361.544
Peter_MS12_170719_163429 Homecage_Sleep Homecage Homecage_Rat 27546.948

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 550939000 128 12 0.195

Implanted probes

MS12 : #1 Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS12 : #2 Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 51, 58, 52, 57, 49, 60, 50, 59, 54, 55, 53, 56
2 63, 38, 64, 39, 61, 41, 62, 42, 33, 37, 34, 35
3 47, 17, 46, 20, 45, 19, 43, 21, 48, 18, 44, 22
4 28, 1, 25, 2, 23, 3, 24, 4, 27, 31, 29, 32
5 8, 13, 7, 14, 6, 15, 5, 16, 9, 12, 10, 11
6 30, 36, 26, 40
7 115, 122, 116, 121, 113, 124, 114, 123, 118, 119, 117, 120
8 127, 102, 128, 103, 125, 105, 126, 106, 97, 101, 98, 99
9 111, 81, 110, 84, 109, 83, 107, 85, 112, 82, 108, 86
10 92, 65, 89, 66, 87, 67, 88, 68, 91, 95, 93, 96
11 72, 77, 71, 78, 70, 79, 69, 80, 73, 76, 74, 75
12 94, 100, 90, 104
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 2 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5 ArduinoRemoteCh1 Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch) dig 6 ArduinoRemoteCh2 Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 ArduinoRemoteCh3 Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 ArduinoRemoteCh4 Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch) aux 1 AccelerometerX Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 2 AccelerometerY Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch) aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2017-07-19 03.26.24 PM.csv 2 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20170719_152622629.avi 2 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20170719_153432112.avi 2 Video 10
OptiTrack, Flex 13 Take 2017-07-19 03.34.34 PM.csv 2 Head position 120
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 20 3
Ripple 20 3
Cortical 6, 12

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-07-08_183512 Peter Petersen Yes 40 36517

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 82458 3.5366092703936 3 CA1 Pyramidal Cell Unknown 8.5012976303088 84.831364966958 0.63
2 58784 2.1341362929163 10 CA1 Pyramidal Cell Unknown 7.5020413718019 85.380436305185 0.64
3 10999 0.49259681160343 4 CA1 Pyramidal Cell Unknown 1.909264478589 131.0002591893 0.73
4 31221 1.3963768022683 4 CA1 Pyramidal Cell Unknown 3.5232695941834 139.47324922724 0.69
5 64948 2.3578897774494 8 CA1 Pyramidal Cell Unknown 8.0679928558231 129.14013715666 0.71
6 33151 1.4843574477718 3 CA1 Pyramidal Cell Unknown 3.2879852794787 154.81836061987 0.72
7 72763 2.6420260186786 11 CA1 Pyramidal Cell Unknown 9.4965848027157 88.765157703839 0.71
8 318377 11.557660719988 10 CA1 Narrow Interneuron Unknown 0.84491027932294 61.956610549852 0.26
9 61067 2.5471190645211 4 CA1 Wide Interneuron Unknown 2.0469320582311 80.747119543135 0.72
10 147768 6.6082110161232 4 CA1 Narrow Interneuron Unknown 3.4851930052515 61.993014001492 0.31
11 11033 0.40061859970778 10 CA1 Pyramidal Cell Unknown 0.090637179370978 193.78011558734 0.7
12 6051 0.27307294686849 3 CA1 Pyramidal Cell Unknown 5.1231201454305 179.7786880567 0.74
13 8798 0.32013110136362 10 CA1 Pyramidal Cell Unknown 1.4776085473971 151.65119169704 0.72
14 8765 1.6911120792586 1 CA1 Pyramidal Cell Unknown 10.61038220194 123.66726112931 0.74
15 17892 3.4514787045674 5 CA1 Pyramidal Cell Unknown 5.0860719874804 99.503456896785 0.71
16 33086 1.2011947425776 10 CA1 Pyramidal Cell Unknown 5.1683491506982 88.352023403099 0.72
17 9364 1.6008286288335 3 CA1 Pyramidal Cell Unknown 9.7180692011961 88.517319355356 0.65
18 22371 0.98181654559692 4 CA1 Pyramidal Cell Unknown 0.98341602968128 100.80855557904 0.7
19 26430 1.0617900802927 9 CA1 Pyramidal Cell Unknown 3.2917139614075 128.96669902254 0.64
20 33171 1.2100955016191 9 CA1 Pyramidal Cell Unknown 7.4462633022821 81.108040366488 0.68
21 32350 1.1746101463024 10 CA1 Pyramidal Cell Unknown 3.8330757341577 88.219198388442 0.68
22 45351 1.9074865651081 3 CA1 Pyramidal Cell Unknown 1.6096668210183 95.208483589624 0.69
23 44517 1.6160623609776 10 CA1 Pyramidal Cell Unknown 5.4585888536963 74.903632152527 0.71
24 24446 0.8876057492286 8 CA1 Pyramidal Cell Unknown 1.6362595107584 113.20252401607 0.7
25 77622 3.4712410649401 3 CA1 Pyramidal Cell Unknown 4.831104583752 95.624673231144 0.71
26 6610 0.24577100283093 9 CA1 Pyramidal Cell Unknown 1.9667170953101 98.960582774978 0.71
27 32918 1.1956287047446 11 CA1 Pyramidal Cell Unknown 8.7793912145331 128.4232434084 0.74
28 15267 0.68315541867438 5 CA1 Pyramidal Cell Unknown 3.4060391694504 135.91245847094 0.72
29 7471 0.30685143246564 5 CA1 Pyramidal Cell Unknown 3.7478249230357 150.21571171405 0.72
30 32346 1.2934113557162 4 CA1 Pyramidal Cell Unknown 2.998825202498 72.046529104103 0.74
31 67451 3.0165338757009 3 CA1 Pyramidal Cell Unknown 5.7819750633793 99.711680508229 0.75
32 79079 2.8710503144279 10 CA1 Narrow Interneuron Unknown 0.34143072117756 77.759375278098 0.35
33 63039 2.8192081638122 5 CA1 Pyramidal Cell Unknown 9.2323799552658 126.36947112699 0.69
34 8578 0.38520302787273 5 CA1 Pyramidal Cell Unknown 1.7486593611564 127.65945058812 0.71
35 4925 0.95079304296333 3 CA1 Pyramidal Cell Unknown 6.497461928934 146.05111231388 0.68
36 54033 2.5142069993344 3 CA1 Narrow Interneuron Unknown 2.9241389521219 93.306888412474 0.35
37 335307 13.92674912574 5 CA1 Narrow Interneuron Unknown 2.132374212289 96.13497631505 0.35
38 100910 4.5127124184347 4 CA1 Narrow Interneuron Unknown 1.4369239916758 75.129028367498 0.33
39 119336 4.7765349845024 2 CA1 Narrow Interneuron Unknown 1.6005228933432 82.809904739489 0.32
40 182253 6.6161453178546 12 CA1 Wide Interneuron Unknown 3.6981558602602 104.19649387745 0.59