Details for Peter_MS10_170320_212321_concat

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  • Date & time: 2017-03-20, 21:23:21

  • Location: Alexandria

  • Animal subject: MS10

  • Investigator: Peter Petersen

  • Experimenters: Peter Petersen

  • Project: Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-06-30 8:12:58 by Peter Petersen ADMIN
    Updated: 2020-07-20 22:16:04 by Peter Petersen ADMIN

  • Notes:
    recordingID 60. Cooling during exploration on the circular maze.

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS10_170320_212321 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 2302.2
Peter_MS10_170320_220510 Homecage_Sleep Homecage Homecage_Rat 2239.344

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 90830880 64 7

Implanted probes

MS10 : Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, -2.5, 1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 49, 56, 48, 57, 51, 54, 50, 55, 53, 52
2 59, 36, 58, 34, 61, 33, 60, 32, 63, 62
3 37, 43, 38, 47, 40, 46, 41, 45, 42, 44
4 39, 27, 35, 24, 29, 22, 25, 23, 21, 20
5 26, 5, 28, 4, 31, 3, 30, 2, 0, 1
6 6, 15, 7, 14, 8, 13, 9, 12, 10, 11
7 16, 17, 18, 19
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) aux 4 Temperature MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch) adc 1 WheelPosition Running wheel
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 3 BaslerSync TTL sync
Intan Technologies, RHD2000 USB interface board (256ch) dig 5,6,7,8 ArduinoRemote Remote Button A-D
Intan Technologies, RHD2000 USB interface board (256ch) adc 3 ch_opto_on
Intan Technologies, RHD2000 USB interface board (256ch) adc 4 ch_opto_off
dig 3 ch_camera_sync

Equipment

File names

Epoch

Type

Framerate

Notes
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20170320_212324949.avi 1 Video 40
OptiTrack, Flex 13 Take 2017-03-20 09.23.35 PM.csv 1 Head position 120
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
457, 458, 459, 460, 461 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 53
Cortical 7
Ripple 47 3
Bad 28, 25, 26, 24, 33 6
RippleNoise 19
GammaPhaseCoupling 53 1

Analysis tags

Tag

Value

Description
OptiTracktracking_offset 5,-5,0
linear_track_slope 10,-10,0 degrees of incline of linear track
CoolingSession 1
pos_x_limits -70,240
pos_y_limits -30,30
cooling_onsets [9*60+38+3.81]
cooling_offsets [9*60+38+15*60+3.81]
time_frame 0, 6450

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Peter Petersen 0 37325

Spike sorted units

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