Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch)	dat	20000	463124880	128	12

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Implanted probes

MS12 : #1 Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, 2.5, -1.6
MS12 : #2 Silicon probe NeuroNexus Buzsaki 5×12 (64 ch, 5 shanks, staggered Non-uniform) | Region: HIP | Coordinates: -3.3, -2.5, -1.6

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	50, 57, 51, 56, 48, 59, 49, 58, 53, 54, 52, 55
2	62, 37, 63, 38, 60, 40, 61, 41, 32, 36, 33, 34
3	46, 16, 45, 19, 44, 18, 42, 20, 47, 17, 43, 21
4	27, 0, 24, 1, 22, 2, 23, 3, 26, 30, 28, 31
5	7, 12, 6, 13, 5, 14, 4, 15, 8, 11, 9, 10
6	29, 35, 25, 39
7	114, 121, 115, 120, 112, 123, 113, 122, 117, 118, 116, 119
8	126, 101, 127, 102, 124, 104, 125, 105, 96, 100, 97, 98
9	110, 80, 109, 83, 108, 82, 106, 84, 111, 81, 107, 85
10	91, 64, 88, 65, 86, 66, 87, 67, 90, 94, 92, 95
11	71, 76, 70, 77, 69, 78, 68, 79, 72, 75, 73, 74
12	93, 99, 89, 103

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
Intan Technologies, RHD2000 USB interface board (256ch)	aux	4	Temperature	MS temperature probe
Intan Technologies, RHD2000 USB interface board (256ch)	adc	1	WheelPosition	Running wheel
Intan Technologies, RHD2000 USB interface board (256ch)	dig	1	OptitrackSync	TTL sync
Intan Technologies, RHD2000 USB interface board (256ch)	dig	2	BaslerSync	TTL sync
Intan Technologies, RHD2000 USB interface board (256ch)	dig	5	ArduinoRemoteCh1	Remote Button A
Intan Technologies, RHD2000 USB interface board (256ch)	dig	6	ArduinoRemoteCh2	Remote Button B
Intan Technologies, RHD2000 USB interface board (256ch)	dig	7	ArduinoRemoteCh3	Remote Button C
Intan Technologies, RHD2000 USB interface board (256ch)	dig	8	ArduinoRemoteCh4	Remote Button D
Intan Technologies, RHD2000 USB interface board (256ch)	aux	1	AccelerometerX	Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch)	aux	2	AccelerometerY	Head mounted accelerometer
Intan Technologies, RHD2000 USB interface board (256ch)	aux	3	AccelerometerZ	Head mounted accelerometer

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Equipment	File names	Epoch	Type	Framerate	Notes
OptiTrack, Flex 13	Take 2017-07-12 12.10.37 AM.csv	2	Head position	120
Basler, acA1300-200uc	Basler acA1300-200uc (21965891)_20170712_101122829.avi	1	Video	10
Basler, acA1300-200uc	Basler acA1300-200uc (21965891)_20170712_121008247.avi	2	Video	10
Basler, acA1300-200uc	Basler acA1300-200uc (21965891)_20170712_125553790.avi	3	Video	10

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
457, 458, 459, 460, 461 (View in Atlas)	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Theta	20	3
Ripple	20	3
Cortical		6, 12

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
KiloSort	Phy			Peter Petersen			0	41732

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